M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_51978

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_51978 1413 29.43 Mlig455_021747

Neo: -

Age: logFC(26M/2M)=-0.241

 Mlig455_021747 {REF} {Length: 1293} {Pfam: Protein of unknown function (DUF4532) [PF15046.8, score=65.4]} {Mouse: ENSMUSG00000079304, Tex52, testis expressed 52, [RH, Score=79.3, Expect=1e-16]} {Smed: dd_Smed_v6_6766_0_1, dd_Smed_v6_6766_0_1, [RH, Score=132, Expect=7e-37]} {RNA1509_33881, RNA1509_9696} {RNA1310_26984, RNA1509_33881, RNA1509_9696} {RNA1509_33881, RNA1509_9696, RNA815_12420}

Cumulative graph for MligTC455_51978

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.063 4.913 0.04984 0.52890
RegionR2 0.697 4.913 0.19084 0.54653
RegionR3 0.707 4.913 0.11823 0.59561
RegionR4 0.336 4.913 0.53377 0.85706
RegionR5 -0.087 4.913 0.85186 1.00000
RegionR6 0.489 4.913 0.28804 0.87941
RegionR7 0.747 4.913 0.12140 0.65839
RegionR8 -0.825 4.913 0.21875 0.82561

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.029 4.913 0.43236 1.00000
RegenerationR2 0.425 4.913 0.40764 0.81846
RegenerationR3 0.247 4.913 0.64268 0.92602
RegenerationR4 0.532 4.913 0.35412 0.78326
RegenerationR5 0.227 4.913 0.67206 0.94170
RegenerationR6 0.085 4.913 0.87825 1.00000
RegenerationBL -0.387 4.913 0.49116 0.85612
RegenerationTP 0.232 4.913 0.69505 1.00000


Genes with expression patterns similar to MligTC455_51978

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_51978 1413 29.43 Mlig455_021747

Neo: -

Age: logFC(26M/2M)=-0.241

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_021747 {REF} {Length: 1293} {Pfam: Protein of unknown function (DUF4532) [PF15046.8, score=65.4]} {Mouse: ENSMUSG00000079304, Tex52, testis expressed 52, [RH, Score=79.3, Expect=1e-16]} {Smed: dd_Smed_v6_6766_0_1, dd_Smed_v6_6766_0_1, [RH, Score=132, Expect=7e-37]} {RNA1509_33881, RNA1509_9696} {RNA1310_26984, RNA1509_33881, RNA1509_9696} {RNA1509_33881, RNA1509_9696, RNA815_12420}
2. MligTC455_46082 2016 41.99 Mlig455_032092

Neo: -

Age: Down-Up-Up

 MVP 2.433 - 0.717 - 0.952 0.764 - Mlig455_032092 {REF} {Length: 3806} {Pfam: Major Vault Protein repeat domain [PF01505.20, score=216.1]; Shoulder domain [PF11978.10, score=163.9]; Major Vault Protein repeat domain [PF17794.3, score=121.3]; Major Vault Protein Repeat domain [PF17795.3, score=116.0]; Major Vault Protein repeat domain [PF17796.3, score=101.2]} {Human: ENSG00000013364, MVP, major vault protein, [RH, Score=1073, Expect=0.0]} {Mouse: ENSMUSG00000030681, Mvp, major vault protein, [RH, Score=1067, Expect=0.0]} {Smed: dd_Smed_v6_1098_0_1, dd_Smed_v6_1098_0_1, [Score=1073, Expect=0.0]} {RNA1509_12771, RNA1509_6349} {RNA1310_3408.1, RNA1509_12771} {RNA1509_12771, RNA815_968.1}
3. MligTC455_16002 752 15.67 Mlig455_062545

Neo: -

Age: -

 TTC16 1.88 - - - 0.972 0.908 - Mlig455_062545 {REF} {Length: 2280} {TRANSSPLICED} {Pfam: Tetratricopeptide repeat [PF07719.19, score=82.7]; Tetratricopeptide repeat [PF00515.30, score=64.9]; TPR repeat [PF13414.8, score=58.1]; Tetratricopeptide repeat [PF13432.8, score=57.0]; Tetratricopeptide repeat [PF13181.8, score=56.4]; Tetratricopeptide repeat [PF13428.8, score=54.2]; Tetratricopeptide repeat [PF14559.8, score=42.2]; Tetratricopeptide repeat [PF13424.8, score=41.4]; Tetratricopeptide repeat [PF13371.8, score=32.2]; Tetratricopeptide repeat [PF13176.8, score=31.2]; Tetratricopeptide repeat [PF13431.8, score=24.0]; NMDA receptor-regulated protein 1 [PF12569.10, score=23.7]; Tetratricopeptide repeat [PF13174.8, score=21.3]; Unstructured region C-term to UIM in Ataxin3 [PF16619.7, score=19.2]} {Human: ENSG00000167094, TTC16, tetratricopeptide repeat domain 16, [RH, Score=291, Expect=3e-86]} {Mouse: ENSMUSG00000039021, Ttc16, tetratricopeptide repeat domain 16, [RH, Score=295, Expect=9e-89]} {Celegans: WBGene00000500, chn-1, C-term of Hsp70-iNteracting protein (CHIP family); Hsp70-interacting protein, [Score=50.8, Expect=1e-06]} {Smed: dd_Smed_v6_11894_0_1, dd_Smed_v6_11894_0_1, [RH, Score=447, Expect=1e-147]} {RNA1509_9009} {RNA1310_10645.1, RNA1509_9009} {RNA1509_9009, RNA815_3627}
4. MligTC455_42585 1184 24.66 Mlig455_042618, Mlig455_042653

Neo: -

Age: Up-Down-Down

Region-enriched R4: 1.335/0.04456

 1.715 - - 0.744 - 0.971 -

Mlig455_042618 {REF} {Length: 5242} {TRANSSPLICED} {RNA1509_27176, RNA1509_50344} {RNA1310_20034, RNA1509_27176, RNA1509_50344} {RNA1509_27176, RNA1509_50344, RNA815_23056}

Mlig455_042653 {REF} {Length: 5047} {TRANSSPLICED} {RNA1509_27176, RNA1509_32638} {RNA1310_20034, RNA1509_32638} {RNA1509_32638, RNA815_23056}
5. MligTC455_09152 404 8.42 Mlig455_017527

Neo: -

Age: -

 1.655 - - - 0.953 0.702 - Mlig455_017527 {REF} {Length: 1127} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_58815} {RNA1310_37674} {RNA815_1594}
6. MligTC455_46944 2203 45.9 Mlig455_006848, Mlig455_055094, Mlig455_055142

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.300

 0.982 - - - - 0.982 -

Mlig455_006848 {REF} {Length: 3192} {Mouse: ENSMUSG00000021086, Ccdc175, coiled-coil domain containing 175, [RH, Score=57.4, Expect=5e-08]} {Smed: dd_Smed_v6_9798_0_1, dd_Smed_v6_9798_0_1, [RH, Score=291, Expect=2e-87]} {RNA1509_7270} {RNA1310_7123.1, RNA1509_7270} {RNA1509_7270, RNA815_2698}

Mlig455_055094 {REF} {Length: 2987} {Mouse: ENSMUSG00000021086, Ccdc175, coiled-coil domain containing 175, [RH, Score=57.4, Expect=5e-08]} {Smed: dd_Smed_v6_9798_0_1, dd_Smed_v6_9798_0_1, [RH, Score=291, Expect=2e-87]} {RNA1509_32123, RNA1509_58459, RNA1509_7270} {RNA1310_7123.1, RNA1509_32123, RNA1509_58459} {RNA1509_32123, RNA1509_58459, RNA815_2698}

Mlig455_055142 {REF} {Length: 2497} {Mouse: ENSMUSG00000021086, Ccdc175, coiled-coil domain containing 175, [RH, Score=57.8, Expect=4e-08]} {Smed: dd_Smed_v6_9798_0_1, dd_Smed_v6_9798_0_1, [RH, Score=287, Expect=9e-86]} {RNA1509_7270} {RNA1310_7123.1} {RNA815_2698}
7. MligTC455_11211 64 1.33 Mlig455_014750

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_014750 {REF} {Length: 809} {NoTransDecoderORF} {RNA1509_24925, RNA1509_33762} {RNA1310_64582, RNA1509_33762} {RNA1509_33762, RNA815_39421}
8. MligTC455_40860 376 7.83 Mlig455_009207

Neo: -

Age: Down-Up-Up

 STOM 0.962 - - - 0.962 - - Mlig455_009207 {REF} {Length: 2381} {Pfam: SPFH domain / Band 7 family [PF01145.27, score=119.2]; SPFH domain-Band 7 family [PF13421.8, score=19.3]} {Human: ENSG00000148175, STOM, stomatin, [Score=341, Expect=2e-116]} {Mouse: ENSMUSG00000026880, Stom, stomatin, [Score=335, Expect=2e-114]} {Dmel: FBgn0030993, Mec2, [RH, Score=333, Expect=8e-113]} {Celegans: WBGene00003166, mec-2, Mechanosensory protein 2, [Score=345, Expect=8e-117]} {Smed: dd_Smed_v6_6396_0_1, dd_Smed_v6_6396_0_1, [Score=380, Expect=3e-132]} {RNA1509_21648, RNA1509_28173, RNA1509_35229, RNA1509_3772} {RNA1310_15480.2, RNA1509_21648, RNA1509_28173, RNA1509_35229, RNA1509_3772} {RNA1509_21648, RNA1509_28173, RNA1509_35229, RNA1509_3772, RNA815_20486}
9. MligTC455_28827 979 20.4 Mlig455_044793

Neo: -

Age: -

 PTPRD 0.955 - - - - 0.955 - Mlig455_044793 {REF} {Length: 5656} {TRANSSPLICED} {Pfam: Protein-tyrosine phosphatase [PF00102.29, score=74.6]; Fibronectin type III domain [PF00041.23, score=72.1]} {Human: ENSG00000153707, PTPRD, protein tyrosine phosphatase, receptor type D, [Score=120, Expect=6e-27]; ENSG00000282932, PTPRD, protein tyrosine phosphatase, receptor type D, [Score=120, Expect=6e-27]; ENSG00000196090, PTPRT, protein tyrosine phosphatase, receptor type T, [Score=118, Expect=3e-26]} {Mouse: ENSMUSG00000028399, Ptprd, protein tyrosine phosphatase, receptor type, D, [Score=120, Expect=4e-27]; ENSMUSG00000053141, Ptprt, protein tyrosine phosphatase, receptor type, T, [Score=117, Expect=4e-26]} {Dmel: FBgn0004369, Ptp99A, Protein tyrosine phosphatase 99A, [Score=92.4, Expect=1e-18]} {Celegans: WBGene00004215, ptp-3, Tyrosine-protein phosphatase Lar-like, [Score=70.1, Expect=7e-12]} {Smed: dd_Smed_v6_13361_0_1, dd_Smed_v6_13361_0_1, [Score=75.5, Expect=1e-13]} {RNA1509_2576} {RNA1310_671.1} {RNA815_239}
10. MligTC455_45278 278 5.79 Mlig455_056500

Neo: -

Age: Down-Up-Down

 CHMP4B 0.954 - - - 0.954 - - Mlig455_056500 {REF} {Length: 2166} {Pfam: Snf7 [PF03357.23, score=166.4]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=43.8]} {Human: ENSG00000101421, CHMP4B, charged multivesicular body protein 4B, [RH, Score=234, Expect=3e-75]} {Mouse: ENSMUSG00000038467, Chmp4b, charged multivesicular body protein 4B, [RH, Score=235, Expect=1e-75]} {Dmel: FBgn0086656, shrb, shrub, [RH, Score=212, Expect=7e-67]} {Celegans: WBGene00016961, vps-32.1, Related to yeast Vacuolar Protein Sorting factor, [Score=209, Expect=9e-66]} {Smed: dd_Smed_v6_654_0_1, dd_Smed_v6_654_0_1, [RH, Score=285, Expect=2e-95]} {RNA1509_7854} {RNA1310_16741} {RNA815_12664}
11. MligTC455_50904 4061 84.6 Mlig455_031879

Neo: -

Age: Down-Up-Down

 0.953 - - - 0.953 - - Mlig455_031879 {REF} {Length: 1689} {Pfam: Zinc-binding domain [PF13695.8, score=25.8]} {RNA1509_11268, RNA1509_36229, RNA1509_38843, RNA1509_40419, RNA1509_7164} {RNA1310_16974.1, RNA1509_11268, RNA1509_36229, RNA1509_38843, RNA1509_40419, RNA1509_7164} {RNA1509_11268, RNA1509_36229, RNA1509_38843, RNA1509_40419, RNA1509_7164, RNA815_5808}
12. MligTC455_53433 6029 125.61 Mlig455_004542, Mlig455_064733

Neo: -

Age: Down-Up-Up

 RSPH4A 0.953 - - - - 0.953 -

Mlig455_004542 {REF} {Length: 1911} {TRANSSPLICED} {Pfam: Radial spokehead-like protein [PF04712.14, score=619.5]} {Human: ENSG00000111834, RSPH4A, radial spoke head component 4A, [RH, Score=442, Expect=4e-148]} {Mouse: ENSMUSG00000039552, Rsph4a, radial spoke head 4 homolog A (Chlamydomonas), [Score=448, Expect=2e-150]} {Dmel: FBgn0034957, CG3121, [Score=227, Expect=6e-66]} {Smed: dd_Smed_v6_5346_0_1, dd_Smed_v6_5346_0_1, [RH, Score=454, Expect=1e-155]} {RNA1509_6840} {RNA1310_12717.2} {RNA815_4800.1}

Mlig455_064733 {REF} {Length: 1911} {TRANSSPLICED} {Pfam: Radial spokehead-like protein [PF04712.14, score=619.5]} {Human: ENSG00000111834, RSPH4A, radial spoke head component 4A, [RH, Score=442, Expect=4e-148]} {Mouse: ENSMUSG00000039552, Rsph4a, radial spoke head 4 homolog A (Chlamydomonas), [Score=448, Expect=2e-150]} {Dmel: FBgn0034957, CG3121, [Score=227, Expect=6e-66]} {Smed: dd_Smed_v6_5346_0_1, dd_Smed_v6_5346_0_1, [RH, Score=454, Expect=1e-155]} {RNA1509_6840} {RNA1310_12717.2} {RNA815_4800.1}
13. MligTC455_49039 533 11.1 Mlig455_002546

Neo: Int S/G2/M

Age: -

Region-enriched R4: 1.825/0.02678

 MMD 0.951 - - - - 0.951 - Mlig455_002546 {REF} {Length: 2081} {TRANSSPLICED} {Pfam: Haemolysin-III related [PF03006.22, score=88.4]} {Human: ENSG00000108960, MMD, monocyte to macrophage differentiation associated, [RH, Score=176, Expect=2e-54]} {Mouse: ENSMUSG00000003948, Mmd, monocyte to macrophage differentiation-associated, [RH, Score=175, Expect=3e-54]} {Dmel: FBgn0029935, CG4615, [RH, Score=186, Expect=1e-57]} {Celegans: WBGene00022158, Y71G12B.23, [RH, Score=167, Expect=5e-51]} {Smed: dd_Smed_v6_10316_0_1, dd_Smed_v6_10316_0_1, [RH, Score=207, Expect=4e-67]} {RNA1509_13493} {RNA1310_35755} {RNA815_14840.1}
14. MligTC455_17315 129 2.69 Mlig455_065409

Neo: -

Age: Up-Down-Down

 0.95 - - - - 0.950 - Mlig455_065409 {REF} {Length: 9465} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF3883) [PF13020.8, score=40.0]} {Smed: dd_Smed_v6_10250_0_1, dd_Smed_v6_10250_0_1, [RH, Score=197, Expect=4e-50]} {RNA1509_10371} {RNA1310_1171} {RNA815_5724}
15. MligTC455_21952 382 7.96 Mlig455_030974, Mlig455_069449

Neo: -

Age: Down-Up-Down

 0.95 - - - - 0.950 -

Mlig455_030974 {REF} {Length: 5703} {Pfam: Tetratricopeptide repeat [PF07719.19, score=37.1]; Tetratricopeptide repeat [PF13428.8, score=32.3]; Tetratricopeptide repeat [PF14559.8, score=28.6]; Tetratricopeptide repeat [PF13181.8, score=27.7]; Tetratricopeptide repeat [PF00515.30, score=23.8]; Tetratricopeptide repeat [PF13176.8, score=20.6]} {RNA1509_6614} {RNA1310_3212} {RNA815_1655}

Mlig455_069449 {REF} {Length: 4564} {Pfam: Tetratricopeptide repeat [PF07719.19, score=38.1]; Tetratricopeptide repeat [PF14559.8, score=32.8]; Tetratricopeptide repeat [PF13428.8, score=30.9]; Tetratricopeptide repeat [PF13181.8, score=30.3]; Tetratricopeptide repeat [PF00515.30, score=25.2]; Tetratricopeptide repeat [PF13176.8, score=21.3]} {RNA1509_54886, RNA1509_57311, RNA1509_6614} {RNA1310_3212, RNA1509_54886, RNA1509_57311, RNA1509_6614} {RNA1509_54886, RNA1509_57311, RNA1509_6614, RNA815_1655}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA