M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_42585

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_42585 1184 24.66 Mlig455_042618, Mlig455_042653

Neo: -

Age: Up-Down-Down

Region-enriched R4: 1.335/0.04456

Mlig455_042618 {REF} {Length: 5242} {TRANSSPLICED} {RNA1509_27176, RNA1509_50344} {RNA1310_20034, RNA1509_27176, RNA1509_50344} {RNA1509_27176, RNA1509_50344, RNA815_23056}

Mlig455_042653 {REF} {Length: 5047} {TRANSSPLICED} {RNA1509_27176, RNA1509_32638} {RNA1310_20034, RNA1509_32638} {RNA1509_32638, RNA815_23056}

Cumulative graph for MligTC455_42585

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.123 4.764 0.37813 1.00000
RegionR2 -0.212 4.764 0.66570 0.99594
RegionR3 0.314 4.764 0.43221 0.95135
RegionR4 1.335 4.764 0.00650 0.04456
RegionR5 0.122 4.764 0.76158 1.00000
RegionR6 0.275 4.764 0.50198 1.00000
RegionR7 -0.7 4.764 0.22696 0.84804
RegionR8 -0.011 4.764 0.98840 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.151 4.764 0.46725 1.00000
RegenerationR2 0.804 4.764 0.05138 0.37428
RegenerationR3 0.601 4.764 0.18211 0.61870
RegenerationR4 0.351 4.764 0.45059 0.84227
RegenerationR5 0.955 4.764 0.03021 0.29109
RegenerationR6 0.881 4.764 0.05187 0.28538
RegenerationBL 1.151 4.764 0.01288 0.11666
RegenerationTP 1.568 4.764 0.00253 0.08178


Genes with expression patterns similar to MligTC455_42585

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_42585 1184 24.66 Mlig455_042618, Mlig455_042653

Neo: -

Age: Up-Down-Down

Region-enriched R4: 1.335/0.04456

 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_042618 {REF} {Length: 5242} {TRANSSPLICED} {RNA1509_27176, RNA1509_50344} {RNA1310_20034, RNA1509_27176, RNA1509_50344} {RNA1509_27176, RNA1509_50344, RNA815_23056}

Mlig455_042653 {REF} {Length: 5047} {TRANSSPLICED} {RNA1509_27176, RNA1509_32638} {RNA1310_20034, RNA1509_32638} {RNA1509_32638, RNA815_23056}
2. MligTC455_51978 1413 29.43 Mlig455_021747

Neo: -

Age: logFC(26M/2M)=-0.241

 1.715 - - 0.744 - 0.971 - Mlig455_021747 {REF} {Length: 1293} {Pfam: Protein of unknown function (DUF4532) [PF15046.8, score=65.4]} {Mouse: ENSMUSG00000079304, Tex52, testis expressed 52, [RH, Score=79.3, Expect=1e-16]} {Smed: dd_Smed_v6_6766_0_1, dd_Smed_v6_6766_0_1, [RH, Score=132, Expect=7e-37]} {RNA1509_33881, RNA1509_9696} {RNA1310_26984, RNA1509_33881, RNA1509_9696} {RNA1509_33881, RNA1509_9696, RNA815_12420}
3. MligTC455_43740 6345 132.19 Mlig455_050446

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.443

Region-enriched R8: 1.096/0.00660

 DYNLL2 0.982 - - - 0.982 - - Mlig455_050446 {REF} {Length: 1186} {Pfam: Dynein light chain type 1 [PF01221.20, score=73.8]; EF hand [PF13202.8, score=40.2]; EF-hand domain pair [PF13499.8, score=39.8]; EF hand [PF00036.34, score=36.4]; EF-hand domain [PF13405.8, score=34.0]; EF-hand domain pair [PF13833.8, score=21.2]} {Human: ENSG00000264364, DYNLL2, dynein light chain LC8-type 2, [Score=63.9, Expect=2e-13]} {Mouse: ENSMUSG00000020483, Dynll2, dynein light chain LC8-type 2, [Score=63.9, Expect=2e-13]} {Dmel: FBgn0011760, ctp, cut up, [Score=60.8, Expect=1e-12]} {Celegans: WBGene00001005, dlc-1, Dynein light chain 1, cytoplasmic, [Score=60.8, Expect=1e-12]} {Smed: dd_Smed_v6_17388_0_1, dd_Smed_v6_17388_0_1, [Score=155, Expect=2e-48]} {RNA1509_18535, RNA1509_27354, RNA1509_43136, RNA1509_49418, RNA1509_8589} {RNA1310_29572, RNA1509_18535, RNA1509_27354, RNA1509_43136, RNA1509_49418, RNA1509_8589} {RNA1509_18535, RNA1509_27354, RNA1509_43136, RNA1509_49418, RNA1509_8589, RNA815_13017}
4. MligTC455_46944 2203 45.9 Mlig455_006848, Mlig455_055094, Mlig455_055142

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.300

 0.977 - - - - 0.977 -

Mlig455_006848 {REF} {Length: 3192} {Mouse: ENSMUSG00000021086, Ccdc175, coiled-coil domain containing 175, [RH, Score=57.4, Expect=5e-08]} {Smed: dd_Smed_v6_9798_0_1, dd_Smed_v6_9798_0_1, [RH, Score=291, Expect=2e-87]} {RNA1509_7270} {RNA1310_7123.1, RNA1509_7270} {RNA1509_7270, RNA815_2698}

Mlig455_055094 {REF} {Length: 2987} {Mouse: ENSMUSG00000021086, Ccdc175, coiled-coil domain containing 175, [RH, Score=57.4, Expect=5e-08]} {Smed: dd_Smed_v6_9798_0_1, dd_Smed_v6_9798_0_1, [RH, Score=291, Expect=2e-87]} {RNA1509_32123, RNA1509_58459, RNA1509_7270} {RNA1310_7123.1, RNA1509_32123, RNA1509_58459} {RNA1509_32123, RNA1509_58459, RNA815_2698}

Mlig455_055142 {REF} {Length: 2497} {Mouse: ENSMUSG00000021086, Ccdc175, coiled-coil domain containing 175, [RH, Score=57.8, Expect=4e-08]} {Smed: dd_Smed_v6_9798_0_1, dd_Smed_v6_9798_0_1, [RH, Score=287, Expect=9e-86]} {RNA1509_7270} {RNA1310_7123.1} {RNA815_2698}
5. MligTC455_28198 639 13.31 Mlig455_030935, Mlig455_032617

Neo: -

Age: Down-Up-Down

 0.968 - - - - 0.968 -

Mlig455_030935 {REF} {Length: 6761} {Pfam: African swine fever virus J13L protein [PF05568.13, score=44.9]} {RNA1509_19556} {RNA1310_9365} {RNA815_12631}

Mlig455_032617 {REF} {Length: 6082} {Pfam: Helitron helicase-like domain at N-terminus [PF14214.8, score=31.2]} {Mouse: ENSMUSG00000070331, Qrich2, glutamine rich 2, [Score=96.3, Expect=1e-19]} {RNA1509_12078, RNA1509_19556} {RNA1310_9365, RNA1509_12078} {RNA1509_12078, RNA815_12631}
6. MligTC455_28827 979 20.4 Mlig455_044793

Neo: -

Age: -

 PTPRD 0.964 - - - - 0.964 - Mlig455_044793 {REF} {Length: 5656} {TRANSSPLICED} {Pfam: Protein-tyrosine phosphatase [PF00102.29, score=74.6]; Fibronectin type III domain [PF00041.23, score=72.1]} {Human: ENSG00000153707, PTPRD, protein tyrosine phosphatase, receptor type D, [Score=120, Expect=6e-27]; ENSG00000282932, PTPRD, protein tyrosine phosphatase, receptor type D, [Score=120, Expect=6e-27]; ENSG00000196090, PTPRT, protein tyrosine phosphatase, receptor type T, [Score=118, Expect=3e-26]} {Mouse: ENSMUSG00000028399, Ptprd, protein tyrosine phosphatase, receptor type, D, [Score=120, Expect=4e-27]; ENSMUSG00000053141, Ptprt, protein tyrosine phosphatase, receptor type, T, [Score=117, Expect=4e-26]} {Dmel: FBgn0004369, Ptp99A, Protein tyrosine phosphatase 99A, [Score=92.4, Expect=1e-18]} {Celegans: WBGene00004215, ptp-3, Tyrosine-protein phosphatase Lar-like, [Score=70.1, Expect=7e-12]} {Smed: dd_Smed_v6_13361_0_1, dd_Smed_v6_13361_0_1, [Score=75.5, Expect=1e-13]} {RNA1509_2576} {RNA1310_671.1} {RNA815_239}
7. MligTC455_16046 633 13.18 Mlig455_022748

Neo: -

Age: Down-Up-Down

 CDYL 0.959 - - - - 0.959 - Mlig455_022748 {REF} {Length: 8355} {TRANSSPLICED} {Pfam: Chromo (CHRromatin Organisation MOdifier) domain [PF00385.26, score=46.1]; Ankyrin repeats (3 copies) [PF12796.9, score=27.1]; Ankyrin repeat [PF13606.8, score=21.5]} {Human: ENSG00000153046, CDYL, chromodomain Y like, [Score=56.2, Expect=7e-08]; ENSG00000196199, MPHOSPH8, M-phase phosphoprotein 8, [Score=53.9, Expect=5e-07]} {Mouse: ENSMUSG00000031758, Cdyl2, chromodomain protein, Y chromosome-like 2, [Score=53.5, Expect=3e-07]; ENSMUSG00000059288, Cdyl, chromodomain protein, Y chromosome-like, [Score=52.4, Expect=7e-07]; ENSMUSG00000079184, Mphosph8, M-phase phosphoprotein 8, [Score=52.4, Expect=9e-07]} {Dmel: FBgn0004400, rhi, rhino, [Score=52.0, Expect=6e-07]} {Smed: dd_Smed_v6_8960_0_1, dd_Smed_v6_8960_0_1, [Score=60.5, Expect=1e-09]} {RNA1509_12680, RNA1509_39952} {RNA1310_20959.1, RNA1509_39952} {RNA1509_39952, RNA815_8097}
8. MligTC455_32679 1614 33.61 Mlig455_029162, Mlig455_030252

Neo: -

Age: -

 SRGAP1 0.959 - - - - 0.959 -

Mlig455_029162 {REF} {Length: 4454} {Pfam: RhoGAP domain [PF00620.29, score=99.0]; SH3 domain [PF00018.30, score=48.4]; Variant SH3 domain [PF14604.8, score=40.4]; Fes/CIP4, and EFC/F-BAR homology domain [PF00611.25, score=37.8]; Variant SH3 domain [PF07653.19, score=23.7]} {Human: ENSG00000196935, SRGAP1, SLIT-ROBO Rho GTPase activating protein 1, [Score=410, Expect=5e-126]; ENSG00000196220, SRGAP3, SLIT-ROBO Rho GTPase activating protein 3, [Score=403, Expect=4e-123]; ENSG00000266028, SRGAP2, SLIT-ROBO Rho GTPase activating protein 2, [Score=400, Expect=4e-122]} {Mouse: ENSMUSG00000030257, Srgap3, SLIT-ROBO Rho GTPase activating protein 3, [Score=403, Expect=2e-123]; ENSMUSG00000020121, Srgap1, SLIT-ROBO Rho GTPase activating protein 1, [Score=401, Expect=1e-122]; ENSMUSG00000026425, Srgap2, SLIT-ROBO Rho GTPase activating protein 2, [Score=395, Expect=2e-120]} {Dmel: FBgn0263456, nwk, nervous wreck, [RH, Score=57.8, Expect=5e-08]} {Celegans: WBGene00006406, srgp-1, Slit-Robo GAP homolog, [Score=297, Expect=3e-85]} {Smed: dd_Smed_v6_5482_0_1, dd_Smed_v6_5482_0_1, [Score=343, Expect=2e-101]} {RNA1509_4307} {RNA1310_1568.1} {RNA815_447.1}

Mlig455_030252 {REF} {Length: 5474} {Pfam: RhoGAP domain [PF00620.29, score=135.9]; SH3 domain [PF00018.30, score=48.1]; Variant SH3 domain [PF14604.8, score=40.0]; Fes/CIP4, and EFC/F-BAR homology domain [PF00611.25, score=37.6]; Variant SH3 domain [PF07653.19, score=23.3]} {Human: ENSG00000196935, SRGAP1, SLIT-ROBO Rho GTPase activating protein 1, [RH, Score=450, Expect=2e-139]; ENSG00000266028, SRGAP2, SLIT-ROBO Rho GTPase activating protein 2, [RH, Score=443, Expect=6e-137]; ENSG00000196220, SRGAP3, SLIT-ROBO Rho GTPase activating protein 3, [RH, Score=436, Expect=5e-134]} {Mouse: ENSMUSG00000020121, Srgap1, SLIT-ROBO Rho GTPase activating protein 1, [RH, Score=441, Expect=4e-136]; ENSMUSG00000026425, Srgap2, SLIT-ROBO Rho GTPase activating protein 2, [RH, Score=437, Expect=5e-135]; ENSMUSG00000030257, Srgap3, SLIT-ROBO Rho GTPase activating protein 3, [RH, Score=433, Expect=3e-133]} {Dmel: FBgn0036257, RhoGAP68F, Rho GTPase activating protein at 68F, [Score=75.1, Expect=1e-13]} {Celegans: WBGene00006406, srgp-1, Slit-Robo GAP homolog, [RH, Score=333, Expect=3e-97]} {Smed: dd_Smed_v6_5482_0_1, dd_Smed_v6_5482_0_1, [RH, Score=370, Expect=3e-110]} {RNA1509_4307, RNA1509_55991} {RNA1310_1568.1, RNA1509_55991} {RNA1509_55991, RNA815_447.1}
9. MligTC455_33387 27 0.57 Mlig455_023913, Mlig455_046500, Mlig455_057016

Neo: Int S/G2/M

Age: Up-Down-Up, logFC(26M/2M)=0.607

 0.957 - - - - 0.957 -

Mlig455_023913 {REF} {Length: 4194} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=48.4]} {Smed: dd_Smed_v6_11577_0_1, dd_Smed_v6_11577_0_1, [Score=73.2, Expect=8e-14]} {RNA1310_77478} {RNA815_28021}

Mlig455_046500 {REF} {Length: 1944} {RNA1310_77478} {RNA815_28021}

Mlig455_057016 {REF} {Length: 2231} {RNA1310_25610.1}
10. MligTC455_48955 294 6.13 Mlig455_034969

Neo: -

Age: Up-Down-Down

 AGRN 0.956 - - - - 0.956 - Mlig455_034969 {REF} {Length: 2190} {Pfam: Kazal-type serine protease inhibitor domain [PF07648.17, score=130.2]; Kazal-type serine protease inhibitor domain [PF00050.23, score=96.2]} {Human: ENSG00000188157, AGRN, agrin, [Score=123, Expect=3e-29]} {Mouse: ENSMUSG00000041936, Agrn, agrin, [Score=126, Expect=2e-30]} {Dmel: FBgn0259878, Fs, Follistatin, [RH, Score=72.4, Expect=3e-13]} {Celegans: WBGene00018304, agr-1, AGRin (Synaptic protein) homolog; AGRin (Synaptic protein) homolog family member, [Score=143, Expect=2e-36]} {Smed: dd_Smed_v6_3649_0_1, dd_Smed_v6_3649_0_1, [RH, Score=201, Expect=5e-56]} {RNA1509_15340} {RNA1310_13904.1} {RNA815_7896}
11. MligTC455_33326 929 19.36 Mlig455_051043

Neo: -

Age: -

 FOXO4 0.953 - - - - 0.953 - Mlig455_051043 {REF} {Length: 2585} {TRANSSPLICED} {Pfam: Forkhead domain [PF00250.20, score=91.4]} {Human: ENSG00000184481, FOXO4, forkhead box O4, [RH, Score=164, Expect=4e-45]; ENSG00000150907, FOXO1, forkhead box O1, [RH, Score=158, Expect=2e-42]; ENSG00000118689, FOXO3, forkhead box O3, [RH, Score=156, Expect=2e-41]} {Mouse: ENSMUSG00000042903, Foxo4, forkhead box O4, [RH, Score=160, Expect=6e-44]; ENSMUSG00000044167, Foxo1, forkhead box O1, [RH, Score=157, Expect=3e-42]; ENSMUSG00000048756, Foxo3, forkhead box O3, [RH, Score=152, Expect=3e-40]; ENSMUSG00000052135, Foxo6, forkhead box O6, [RH, Score=152, Expect=6e-41]} {Dmel: FBgn0038197, foxo, forkhead box, sub-group O, [RH, Score=152, Expect=7e-41]} {Celegans: WBGene00000912, daf-16, Forkhead box protein O, [RH, Score=144, Expect=1e-38]} {Smed: dd_Smed_v6_3040_0_1, dd_Smed_v6_3040_0_1, [Score=97.8, Expect=1e-22]} {RNA1509_29495, RNA1509_51486, RNA1509_8075} {RNA1310_8150, RNA1509_29495, RNA1509_51486, RNA1509_8075} {RNA1509_29495, RNA1509_51486, RNA1509_8075, RNA815_6755.1}
12. MligTC455_31313 381 7.94 Mlig455_001901

Neo: -

Age: -

 ARGLU1 0.951 - - - - 0.951 - Mlig455_001901 {REF} {Length: 2328} {TRANSSPLICED} {Pfam: Arginine and glutamate-rich 1 [PF15346.8, score=111.3]} {Human: ENSG00000134884, ARGLU1, arginine and glutamate rich 1, [RH, Score=79.0, Expect=1e-16]} {Mouse: ENSMUSG00000040459, Arglu1, arginine and glutamate rich 1, [RH, Score=79.3, Expect=9e-17]} {Dmel: FBgn0051712, CG31712, [RH, Score=83.2, Expect=3e-18]} {Smed: dd_Smed_v6_6381_0_1, dd_Smed_v6_6381_0_1, [RH, Score=63.9, Expect=5e-12]} {RNA1509_30130} {RNA1310_34850} {RNA815_5433.1}
13. MligTC455_51596 719 14.98 Mlig455_014910

Neo: -

Age: -

Region-enriched R7: 2.054/0.02070

 0.95 - - - 0.950 - - Mlig455_014910 {REF} {Length: 3079} {Pfam: Major Facilitator Superfamily [PF07690.18, score=29.8]} {Dmel: FBgn0033028, CG11665, [Score=49.7, Expect=4e-06]} {Smed: dd_Smed_v6_1284_0_1, dd_Smed_v6_1284_0_1, [Score=471, Expect=1e-164]} {RNA1509_10248} {RNA1310_28488} {RNA815_13739}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA