M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_52806

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_52806 65 1.35 Mlig455_061262

Neo: -

Age: -

 Mlig455_061262 {REF} {Length: 3333} {NoTransDecoderORF} {RNA1509_33264} {RNA1310_69399} {RNA815_9413.5}

Cumulative graph for MligTC455_52806

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.369 1.519 1.00000 1.00000
RegionR2 0.421 1.519 0.49283 0.87397
RegionR3 -1.683 1.519 1.00000 1.00000
RegionR4 1.511 1.519 0.34761 0.66863
RegionR5 1.371 1.519 0.24077 0.55233
RegionR6 1.562 1.519 0.19915 0.76957
RegionR7 -1.683 1.519 1.00000 1.00000
RegionR8 -1.129 1.519 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.277 1.519 0.99996 1.00000
RegenerationR2 2.104 1.519 0.02790 0.27595
RegenerationR3 3.58 1.519 0.02891 0.30588
RegenerationR4 1.871 1.519 0.12782 0.54222
RegenerationR5 1.829 1.519 0.10172 0.48483
RegenerationR6 0.49 1.519 0.73695 0.94563
RegenerationBL 3.271 1.519 0.09632 0.36397
RegenerationTP 4.977 1.519 0.03535 0.31404


Genes with expression patterns similar to MligTC455_52806

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_52806 65 1.35 Mlig455_061262

Neo: -

Age: -

 4 - - 1.000 1.000 1.000 1.000 Mlig455_061262 {REF} {Length: 3333} {NoTransDecoderORF} {RNA1509_33264} {RNA1310_69399} {RNA815_9413.5}
2. MligTC455_37250 95 1.97 Mlig455_057274

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.378

 ELK1 0.969 - - - - - 0.969 Mlig455_057274 {REF} {Length: 3932} {Pfam: Ets-domain [PF00178.24, score=110.7]; Cysteine-rich secretory protein family [PF00188.28, score=76.7]} {Human: ENSG00000126767, ELK1, ELK1, ETS transcription factor, [RH, Score=138, Expect=1e-34]} {Mouse: ENSMUSG00000009406, Elk1, ELK1, member of ETS oncogene family, [RH, Score=139, Expect=7e-35]} {Dmel: FBgn0005658, Ets65A, Ets at 65A, [Score=103, Expect=2e-24]} {Celegans: WBGene00002990, lin-1, LIN-1, [RH, Score=125, Expect=1e-30]} {Smed: dd_Smed_v6_8018_0_1, dd_Smed_v6_8018_0_1, [RH, Score=156, Expect=2e-40]} {RNA1509_25660} {RNA1310_26919} {RNA815_9547.1}
3. MligTC455_37387 77 1.6 Mlig455_052015, Mlig455_052090

Neo: -

Age: -

 TUB 0.954 - - 0.954 - - -

Mlig455_052015 {REF} {Length: 2427} {TRANSSPLICED} {Pfam: Tub family [PF01167.20, score=283.8]} {Human: ENSG00000166402, TUB, tubby bipartite transcription factor, [Score=352, Expect=5e-117]} {Mouse: ENSMUSG00000031028, Tub, tubby bipartite transcription factor, [Score=349, Expect=4e-117]; ENSMUSG00000001521, Tulp3, tubby-like protein 3, [Score=341, Expect=7e-114]} {Dmel: FBgn0015721, ktub, king tubby, [Score=324, Expect=3e-107]} {Celegans: WBGene00006655, tub-1, Tubby protein homolog 1, [Score=299, Expect=3e-98]} {Smed: dd_Smed_v6_11228_0_1, dd_Smed_v6_11228_0_1, [Score=392, Expect=3e-134]} {RNA1509_46254} {RNA1310_10312.1} {RNA815_28323}

Mlig455_052090 {REF} {Length: 2757} {TRANSSPLICED} {Pfam: Tub family [PF01167.20, score=283.8]} {Human: ENSG00000166402, TUB, tubby bipartite transcription factor, [Score=352, Expect=3e-117]} {Mouse: ENSMUSG00000031028, Tub, tubby bipartite transcription factor, [Score=349, Expect=5e-117]; ENSMUSG00000001521, Tulp3, tubby-like protein 3, [Score=341, Expect=7e-114]} {Dmel: FBgn0015721, ktub, king tubby, [Score=323, Expect=3e-107]} {Celegans: WBGene00006655, tub-1, Tubby protein homolog 1, [Score=299, Expect=3e-98]} {Smed: dd_Smed_v6_11228_0_1, dd_Smed_v6_11228_0_1, [Score=394, Expect=4e-135]} {RNA1509_46254} {RNA1310_10312.1, RNA1509_46254} {RNA1509_46254, RNA815_28323}
4. MligTC455_53516 301 6.26 Mlig455_042461

Neo: -

Age: -

 PHYHD1 0.954 - - - - 0.954 - Mlig455_042461 {REF} {Length: 2483} {TRANSSPLICED} {Pfam: Phytanoyl-CoA dioxygenase (PhyH) [PF05721.15, score=108.4]} {Human: ENSG00000175287, PHYHD1, phytanoyl-CoA dioxygenase domain containing 1, [Score=72.4, Expect=4e-14]} {Mouse: ENSMUSG00000079484, Phyhd1, phytanoyl-CoA dioxygenase domain containing 1, [Score=67.0, Expect=2e-12]} {Celegans: WBGene00013650, Y105C5B.9, Phytanoyl-CoA dioxygenase domain-containing protein 1 homolog, [Score=59.3, Expect=5e-10]} {Smed: dd_Smed_v6_1292_0_1, dd_Smed_v6_1292_0_1, [RH, Score=285, Expect=4e-96]} {RNA1509_59515} {RNA1310_29715} {RNA815_13679}
5. MligTC455_21528 367 7.64 Mlig455_015393, Mlig455_015396

Neo: Int S/G2/M

Age: -

 ASCC3 0.953 - - 0.953 - - -

Mlig455_015393 {REF} {Length: 8035} {Pfam: Sec63 Brl domain [PF02889.18, score=439.6]; DEAD/DEAH box helicase [PF00270.31, score=178.1]; Type III restriction enzyme, res subunit [PF04851.17, score=81.0]; Helicase conserved C-terminal domain [PF00271.33, score=48.8]; AAA domain [PF13401.8, score=30.9]; AAA domain [PF13604.8, score=30.2]; AAA domain [PF13245.8, score=22.7]} {Human: ENSG00000112249, ASCC3, activating signal cointegrator 1 complex subunit 3, [RH, Score=2188, Expect=0.0]} {Mouse: ENSMUSG00000038774, Ascc3, activating signal cointegrator 1 complex subunit 3, [RH, Score=2186, Expect=0.0]} {Dmel: FBgn0038344, obe, obelus, [RH, Score=1927, Expect=0.0]} {Celegans: WBGene00013189, Y54E2A.4, [RH, Score=1679, Expect=0.0]} {Smed: dd_Smed_v6_11140_0_1, dd_Smed_v6_11140_0_1, [RH, Score=1927, Expect=0.0]} {RNA1509_2241, RNA1509_55312} {RNA1310_438, RNA1509_2241, RNA1509_55312} {RNA1509_2241, RNA1509_55312, RNA815_146.1}

Mlig455_015396 {REF} {Length: 7701} {Pfam: Sec63 Brl domain [PF02889.18, score=440.8]; DEAD/DEAH box helicase [PF00270.31, score=177.4]; Type III restriction enzyme, res subunit [PF04851.17, score=80.9]; Helicase conserved C-terminal domain [PF00271.33, score=48.4]; AAA domain [PF13401.8, score=30.9]; AAA domain [PF13604.8, score=30.1]; AAA domain [PF13245.8, score=22.2]} {Human: ENSG00000112249, ASCC3, activating signal cointegrator 1 complex subunit 3, [RH, Score=2188, Expect=0.0]} {Mouse: ENSMUSG00000038774, Ascc3, activating signal cointegrator 1 complex subunit 3, [RH, Score=2187, Expect=0.0]} {Dmel: FBgn0038344, obe, obelus, [RH, Score=1927, Expect=0.0]} {Celegans: WBGene00013189, Y54E2A.4, [RH, Score=1677, Expect=0.0]} {Smed: dd_Smed_v6_11140_0_1, dd_Smed_v6_11140_0_1, [RH, Score=1929, Expect=0.0]} {RNA1509_2241} {RNA1310_438} {RNA815_146.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA