M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_52894

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_52894 103 2.15 Mlig455_055947

Neo: -

Age: Down-Down-Up

 ANK3 Mlig455_055947 {REF} {Length: 3569} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=82.2]; Ankyrin repeats (many copies) [PF13637.8, score=78.5]; Ankyrin repeats (many copies) [PF13857.8, score=77.2]; Ankyrin repeat [PF13606.8, score=52.9]; Ankyrin repeat [PF00023.32, score=49.9]} {Human: ENSG00000151150, ANK3, ankyrin 3, [Score=64.7, Expect=8e-10]} {Mouse: ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=61.2, Expect=6e-09]} {Dmel: FBgn0040372, G9a, [Score=61.6, Expect=4e-09]} {Celegans: WBGene00015646, mlt-10, [RH, Score=181, Expect=2e-47]} {Smed: dd_Smed_v6_9418_0_1, dd_Smed_v6_9418_0_1, [Score=106, Expect=7e-24]} {RNA1509_25185} {RNA1310_8316} {RNA815_7052}

Cumulative graph for MligTC455_52894

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.762 1.882 0.99968 1.00000
RegionR2 -0.852 1.882 0.98261 1.00000
RegionR3 0.132 1.882 0.90946 1.00000
RegionR4 4.046 1.882 0.14029 0.38248
RegionR5 2.031 1.882 0.27026 0.59476
RegionR6 0.267 1.882 0.75634 1.00000
RegionR7 1.995 1.882 0.32367 0.95870
RegionR8 -1.858 1.882 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.845 1.882 0.99992 1.00000
RegenerationR2 1.154 1.882 0.54750 0.89185
RegenerationR3 0.849 1.882 0.66520 0.93539
RegenerationR4 0.251 1.882 0.82404 0.99545
RegenerationR5 0.046 1.882 0.97712 1.00000
RegenerationR6 -0.258 1.882 0.90318 1.00000
RegenerationBL 0.752 1.882 0.66938 1.00000
RegenerationTP 0.505 1.882 0.84522 1.00000


Genes with expression patterns similar to MligTC455_52894

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_52894 103 2.15 Mlig455_055947

Neo: -

Age: Down-Down-Up

 ANK3 4 - - 1.000 1.000 1.000 1.000 Mlig455_055947 {REF} {Length: 3569} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=82.2]; Ankyrin repeats (many copies) [PF13637.8, score=78.5]; Ankyrin repeats (many copies) [PF13857.8, score=77.2]; Ankyrin repeat [PF13606.8, score=52.9]; Ankyrin repeat [PF00023.32, score=49.9]} {Human: ENSG00000151150, ANK3, ankyrin 3, [Score=64.7, Expect=8e-10]} {Mouse: ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=61.2, Expect=6e-09]} {Dmel: FBgn0040372, G9a, [Score=61.6, Expect=4e-09]} {Celegans: WBGene00015646, mlt-10, [RH, Score=181, Expect=2e-47]} {Smed: dd_Smed_v6_9418_0_1, dd_Smed_v6_9418_0_1, [Score=106, Expect=7e-24]} {RNA1509_25185} {RNA1310_8316} {RNA815_7052}
2. MligTC455_38858 64 1.34 Mlig455_068394

Neo: -

Age: Up-Down-Up

 1.765 - - 0.953 - 0.812 - Mlig455_068394 {REF} {Length: 1423} {RNA1509_22707} {RNA1310_34488} {RNA815_20734.1}
3. MligTC455_31617 74 1.55 Mlig455_065879

Neo: Int S/G2/M

Age: -

 USP5 0.983 - - - - 0.983 - Mlig455_065879 {REF} {Length: 3844} {TRANSSPLICED} {Pfam: Ubiquitin carboxyl-terminal hydrolase [PF00443.31, score=141.8]; Variant UBP zinc finger [PF17807.3, score=79.8]; UBA/TS-N domain [PF00627.33, score=72.9]; Zn-finger in ubiquitin-hydrolases and other protein [PF02148.21, score=55.1]; Ubiquitin carboxyl-terminal hydrolase [PF13423.8, score=37.6]} {Human: ENSG00000111667, USP5, ubiquitin specific peptidase 5, [RH, Score=750, Expect=0.0]} {Mouse: ENSMUSG00000038429, Usp5, ubiquitin specific peptidase 5 (isopeptidase T), [RH, Score=749, Expect=0.0]} {Dmel: FBgn0035402, Usp5, Ubiquitin specific protease 5, [RH, Score=685, Expect=0.0]} {Celegans: WBGene00020839, usp-5, Ubiquitinyl hydrolase 1, [RH, Score=417, Expect=6e-134]} {Smed: dd_Smed_v6_3655_0_1, dd_Smed_v6_3655_0_1, [RH, Score=323, Expect=2e-103]} {RNA1509_3862, RNA1509_49588} {RNA1310_7195.1, RNA1509_49588} {RNA1509_49588, RNA815_2229}
4. MligTC455_36515 487 10.15 Mlig455_024333

Neo: -

Age: -

Regeneration-downregulated BL: -4.316

Regeneration-depleted BL: -4.316

 0.974 - - - - 0.974 - Mlig455_024333 {REF} {Length: 839} {RNA1509_48477} {RNA1310_73282, RNA1509_48477} {RNA1509_48477, RNA815_40394}
5. MligTC455_36516 495 10.32 Mlig455_032048

Neo: -

Age: -

Regeneration-downregulated BL: -4.315

Regeneration-depleted BL: -4.315

 0.973 - - - - 0.973 - Mlig455_032048 {REF} {Length: 2397} {TRANSSPLICED} {Smed: dd_Smed_v6_8694_0_1, dd_Smed_v6_8694_0_1, [RH, Score=74.7, Expect=7e-17]} {RNA1509_19681, RNA1509_42038} {RNA1310_1563, RNA1509_19681, RNA1509_42038} {RNA1509_19681, RNA1509_42038, RNA815_36419}
6. MligTC455_04010 790 16.45 Mlig455_001733, Mlig455_063319, Mlig455_063320, Mlig455_063324

Neo: -

Age: Up-Down-Down

 DGKQ 0.96 - - - - - 0.960

Mlig455_001733 {REF} {Length: 6241} {TRANSSPLICED} {Pfam: Diacylglycerol kinase accessory domain [PF00609.21, score=184.8]; Phorbol esters/diacylglycerol binding domain (C1 domain) [PF00130.24, score=99.4]; Diacylglycerol kinase catalytic domain [PF00781.26, score=80.0]; Ras association (RalGDS/AF-6) domain [PF00788.25, score=71.0]; C1 domain [PF03107.18, score=19.2]} {Human: ENSG00000145214, DGKQ, diacylglycerol kinase theta, [RH, Score=652, Expect=0.0]} {Mouse: ENSMUSG00000004815, Dgkq, diacylglycerol kinase, theta, [RH, Score=676, Expect=0.0]} {Dmel: FBgn0051140, CG31140, [RH, Score=713, Expect=0.0]} {Celegans: WBGene00000958, dgk-1, Diacylglycerol kinase, [RH, Score=857, Expect=0.0]} {Smed: dd_Smed_v6_7792_0_2, dd_Smed_v6_7792_0_2, [RH, Score=1085, Expect=0.0]} {RNA1509_58469} {RNA1310_29291.1} {RNA815_4001.1}

Mlig455_063319 {REF} {Length: 4579} {Pfam: Diacylglycerol kinase accessory domain [PF00609.21, score=186.5]; Diacylglycerol kinase catalytic domain [PF00781.26, score=42.3]} {Human: ENSG00000145214, DGKQ, diacylglycerol kinase theta, [Score=347, Expect=6e-110]} {Mouse: ENSMUSG00000004815, Dgkq, diacylglycerol kinase, theta, [Score=357, Expect=7e-114]} {Dmel: FBgn0051140, CG31140, [Score=545, Expect=0.0]} {Celegans: WBGene00000958, dgk-1, Diacylglycerol kinase, [Score=452, Expect=2e-152]} {Smed: dd_Smed_v6_7792_0_2, dd_Smed_v6_7792_0_2, [Score=561, Expect=0.0]} {RNA1509_56947} {RNA1310_27601} {RNA815_17970}

Mlig455_063320 {REF} {Length: 838} {Pfam: Phorbol esters/diacylglycerol binding domain (C1 domain) [PF00130.24, score=27.6]} {Human: ENSG00000145214, DGKQ, diacylglycerol kinase theta, [Score=61.6, Expect=2e-11]} {Mouse: ENSMUSG00000004815, Dgkq, diacylglycerol kinase, theta, [Score=60.1, Expect=4e-11]} {Dmel: FBgn0051140, CG31140, [Score=113, Expect=5e-30]} {Celegans: WBGene00000958, dgk-1, Diacylglycerol kinase, [Score=94.4, Expect=2e-23]} {Smed: dd_Smed_v6_9631_0_1, dd_Smed_v6_9631_0_1, [Score=103, Expect=1e-26]} {RNA1509_58469} {RNA1310_51150.1} {RNA815_4001.1}

Mlig455_063324 {REF} {Length: 5728} {Pfam: Diacylglycerol kinase accessory domain [PF00609.21, score=184.8]; Phorbol esters/diacylglycerol binding domain (C1 domain) [PF00130.24, score=99.4]; Diacylglycerol kinase catalytic domain [PF00781.26, score=80.0]; Ras association (RalGDS/AF-6) domain [PF00788.25, score=71.0]} {Human: ENSG00000145214, DGKQ, diacylglycerol kinase theta, [RH, Score=652, Expect=0.0]} {Mouse: ENSMUSG00000004815, Dgkq, diacylglycerol kinase, theta, [RH, Score=675, Expect=0.0]} {Dmel: FBgn0051140, CG31140, [RH, Score=714, Expect=0.0]} {Celegans: WBGene00000958, dgk-1, Diacylglycerol kinase, [RH, Score=855, Expect=0.0]} {Smed: dd_Smed_v6_7792_0_2, dd_Smed_v6_7792_0_2, [RH, Score=1085, Expect=0.0]} {RNA1509_56947, RNA1509_58469} {RNA1310_27601, RNA1509_56947, RNA1509_58469} {RNA1509_56947, RNA1509_58469, RNA815_4001.1}
7. MligTC455_15526 410 8.54 Mlig455_037465, Mlig455_037504

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.379

 0.959 - - - 0.959 - -

Mlig455_037465 {REF} {Length: 2126} {TRANSSPLICED} {tRNA: Val(CAC),pseudo, score=26.7} {RNA1509_54950} {RNA1310_28080} {RNA815_30352}

Mlig455_037504 {REF} {Length: 2131} {TRANSSPLICED} {RNA1509_54950} {RNA1310_28080, RNA1509_54950} {RNA1509_54950, RNA815_30352}
8. MligTC455_34608 166 3.46 Mlig455_040598, Mlig455_040609, Mlig455_062035

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.646

 ANK1, ANKRD44 0.959 - - - - 0.959 -

Mlig455_040598 {REF} {Length: 1201} {RNA1310_15752.1} {RNA815_13198}

Mlig455_040609 {REF} {Length: 6223} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=316.5]; Ankyrin repeats (many copies) [PF13637.8, score=308.7]; Ankyrin repeat [PF13606.8, score=196.4]; Ankyrin repeat [PF00023.32, score=180.0]; Ankyrin repeats (many copies) [PF13857.8, score=178.3]} {Human: ENSG00000065413, ANKRD44, ankyrin repeat domain 44, [Score=169, Expect=3e-42]; ENSG00000139645, ANKRD52, ankyrin repeat domain 52, [Score=166, Expect=2e-41]; ENSG00000145362, ANK2, ankyrin 2, [Score=165, Expect=1e-40]} {Mouse: ENSMUSG00000052331, Ankrd44, ankyrin repeat domain 44, [Score=173, Expect=1e-43]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=181, Expect=1e-45]} {Celegans: WBGene00006616, trp-4, TRP (Transient receptor potential) channel family, [Score=145, Expect=8e-35]} {Smed: dd_Smed_v6_7952_0_1, dd_Smed_v6_7952_0_1, [Score=157, Expect=9e-39]} {RNA1509_29695} {RNA1310_10254} {RNA815_10548}

Mlig455_062035 {REF} {Length: 6483} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=227.2]; Ankyrin repeats (many copies) [PF13637.8, score=214.4]; Ankyrin repeat [PF13606.8, score=143.3]; Ankyrin repeat [PF00023.32, score=135.0]; Ankyrin repeats (many copies) [PF13857.8, score=127.0]} {Human: ENSG00000029534, ANK1, ankyrin 1, [Score=145, Expect=4e-35]; ENSG00000145362, ANK2, ankyrin 2, [Score=142, Expect=3e-34]; ENSG00000151458, ANKRD50, ankyrin repeat domain 50, [Score=140, Expect=2e-33]} {Mouse: ENSMUSG00000031543, Ank1, ankyrin 1, erythroid, [Score=148, Expect=5e-36]; ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=141, Expect=4e-34]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=144, Expect=9e-35]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=132, Expect=4e-31]} {Smed: dd_Smed_v6_10835_0_2, dd_Smed_v6_10835_0_2, [Score=132, Expect=2e-31]} {RNA1509_29695} {RNA1310_10254} {RNA815_10548}
9. MligTC455_48454 602 12.54 Mlig455_041932

Neo: -

Age: Down-Up-Down

 CCDC154 0.959 - - - - - 0.959 Mlig455_041932 {REF} {Length: 4159} {Pfam: Coiled-coil domain-containing protein 154 [PF15450.8, score=111.7]} {Human: ENSG00000197599, CCDC154, coiled-coil domain containing 154, [Score=94.7, Expect=2e-19]} {Mouse: ENSMUSG00000059562, Ccdc154, coiled-coil domain containing 154, [Score=86.3, Expect=5e-17]} {Celegans: WBGene00001328, epi-1, Laminin-like protein epi-1, [Score=51.2, Expect=3e-06]} {Smed: dd_Smed_v6_10236_0_1, dd_Smed_v6_10236_0_1, [Score=407, Expect=1e-131]} {RNA1509_37351, RNA1509_5383} {RNA1310_2073.1, RNA1509_37351, RNA1509_5383} {RNA1509_37351, RNA1509_5383, RNA815_2050}
10. MligTC455_13117 308 6.41 Mlig455_040529

Neo: -

Age: Down-Down-Down

 0.954 - - - 0.954 - - Mlig455_040529 {REF} {Length: 2456} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF3472) [PF11958.10, score=68.3]; Ricin-type beta-trefoil lectin domain-like [PF14200.8, score=27.6]; Ricin-type beta-trefoil lectin domain [PF00652.24, score=23.9]} {RNA1509_33406, RNA1509_40329, RNA1509_40481, RNA1509_58263} {RNA1310_18012.1, RNA1509_33406, RNA1509_40329, RNA1509_40481, RNA1509_58263} {RNA1509_33406, RNA1509_40329, RNA1509_40481, RNA1509_58263, RNA815_10798}
11. MligTC455_34331 94 1.95 Mlig455_008272, Mlig455_015962, Mlig455_032570, Mlig455_033195

Neo: -

Age: -

 0.952 - - - - 0.952 -

Mlig455_008272 {REF} {Length: 823} {NoTransDecoderORF} {RNA1310_129992} {RNA815_38794.1}

Mlig455_015962 {REF} {Length: 3178} {Pfam: Coiled-coil region of CCDC155 or KASH [PF14662.8, score=23.3]; Filament-like plant protein, long coiled-coil [PF05911.13, score=17.0]} {RNA1310_17352.1} {RNA815_9324.1}

Mlig455_032570 {REF} {Length: 263} {NoTransDecoderORF} {RNA1310_129992} {RNA815_38794.1}

Mlig455_033195 {REF} {Length: 272} {NoTransDecoderORF} {RNA1310_129992} {RNA815_38794.1}
12. MligTC455_50975 173 3.6 Mlig455_014388

Neo: -

Age: Down-Up-Up

 CHRNB3 0.95 - - - 0.950 - - Mlig455_014388 {REF} {Length: 1742} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=101.6]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=23.6]} {Human: ENSG00000147432, CHRNB3, cholinergic receptor nicotinic beta 3 subunit, [Score=110, Expect=4e-26]; ENSG00000120903, CHRNA2, cholinergic receptor nicotinic alpha 2 subunit, [Score=108, Expect=2e-25]; ENSG00000169684, CHRNA5, cholinergic receptor nicotinic alpha 5 subunit, [Score=107, Expect=5e-25]; ENSG00000274542, AC243734.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=106, Expect=9e-25]; ENSG00000175344, CHRNA7, cholinergic receptor nicotinic alpha 7 subunit, [Score=106, Expect=7e-25]; ENSG00000282088, AC254952.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=105, Expect=2e-24]} {Mouse: ENSMUSG00000031492, Chrnb3, cholinergic receptor, nicotinic, beta polypeptide 3, [Score=114, Expect=5e-28]} {Dmel: FBgn0000036, nAChRalpha1, nicotinic Acetylcholine Receptor alpha1, [Score=107, Expect=2e-25]} {Celegans: WBGene00000955, des-2, Acetylcholine receptor subunit alpha-type des-2, [Score=104, Expect=2e-24]} {Smed: dd_Smed_v6_26232_0_1, dd_Smed_v6_26232_0_1, [Score=157, Expect=2e-43]} {RNA1310_54548} {RNA815_33490}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA