M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_52992

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_52992 1874 39.04 Mlig455_020430, Mlig455_020441

Neo: -

Age: Down-Down-Up

 BRK1

Mlig455_020430 {REF} {Length: 572} {TRANSSPLICED} {Pfam: Subunit CCDC53 of WASH complex [PF10152.11, score=23.2]} {Human: ENSG00000254999, BRK1, BRICK1, SCAR/WAVE actin nucleating complex subunit, [RH, Score=87.8, Expect=4e-24]} {Mouse: ENSMUSG00000033940, Brk1, BRICK1, SCAR/WAVE actin-nucleating complex subunit, [RH, Score=88.6, Expect=2e-24]} {Dmel: FBgn0061198, HSPC300, Haematopoietic stem/progenitor cell protein 300, [RH, Score=85.5, Expect=2e-23]} {Celegans: WBGene00013308, nuo-3, NADH Ubiquinone Oxidoreductase, [RH, Score=70.1, Expect=2e-17]} {Smed: dd_Smed_v6_1835_0_1, dd_Smed_v6_1835_0_1, [RH, Score=68.2, Expect=6e-17]} {RNA1509_8330} {RNA1310_46221, RNA1509_8330} {RNA1509_8330, RNA815_31100}

Mlig455_020441 {REF} {Length: 571} {TRANSSPLICED} {Pfam: Subunit CCDC53 of WASH complex [PF10152.11, score=23.2]} {Human: ENSG00000254999, BRK1, BRICK1, SCAR/WAVE actin nucleating complex subunit, [RH, Score=87.8, Expect=4e-24]} {Mouse: ENSMUSG00000033940, Brk1, BRICK1, SCAR/WAVE actin-nucleating complex subunit, [RH, Score=88.6, Expect=2e-24]} {Dmel: FBgn0061198, HSPC300, Haematopoietic stem/progenitor cell protein 300, [RH, Score=85.5, Expect=2e-23]} {Celegans: WBGene00013308, nuo-3, NADH Ubiquinone Oxidoreductase, [RH, Score=70.1, Expect=2e-17]} {Smed: dd_Smed_v6_1835_0_1, dd_Smed_v6_1835_0_1, [RH, Score=68.2, Expect=6e-17]} {RNA1509_8330} {RNA1310_46221} {RNA815_31100}

Cumulative graph for MligTC455_52992

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.988 5.549 0.24570 0.89196
RegionR2 -0.312 5.549 0.56803 0.92921
RegionR3 0.164 5.549 0.71777 1.00000
RegionR4 0.102 5.549 0.84438 1.00000
RegionR5 0.381 5.549 0.36758 0.72009
RegionR6 0.584 5.549 0.18350 0.74785
RegionR7 -0.079 5.549 0.86343 1.00000
RegionR8 0.148 5.549 0.76956 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -7.845 5.549 0.02643 0.60498
RegenerationR2 -0.809 5.549 0.15317 0.58859
RegenerationR3 -0.951 5.549 0.10436 0.51190
RegenerationR4 -0.417 5.549 0.49388 0.86652
RegenerationR5 -1.072 5.549 0.06317 0.39830
RegenerationR6 -1.134 5.549 0.05238 0.28666
RegenerationBL -1.208 5.549 0.03342 0.20496
RegenerationTP -0.038 5.549 0.94832 1.00000


Genes with expression patterns similar to MligTC455_52992

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_52992 1874 39.04 Mlig455_020430, Mlig455_020441

Neo: -

Age: Down-Down-Up

 BRK1 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_020430 {REF} {Length: 572} {TRANSSPLICED} {Pfam: Subunit CCDC53 of WASH complex [PF10152.11, score=23.2]} {Human: ENSG00000254999, BRK1, BRICK1, SCAR/WAVE actin nucleating complex subunit, [RH, Score=87.8, Expect=4e-24]} {Mouse: ENSMUSG00000033940, Brk1, BRICK1, SCAR/WAVE actin-nucleating complex subunit, [RH, Score=88.6, Expect=2e-24]} {Dmel: FBgn0061198, HSPC300, Haematopoietic stem/progenitor cell protein 300, [RH, Score=85.5, Expect=2e-23]} {Celegans: WBGene00013308, nuo-3, NADH Ubiquinone Oxidoreductase, [RH, Score=70.1, Expect=2e-17]} {Smed: dd_Smed_v6_1835_0_1, dd_Smed_v6_1835_0_1, [RH, Score=68.2, Expect=6e-17]} {RNA1509_8330} {RNA1310_46221, RNA1509_8330} {RNA1509_8330, RNA815_31100}

Mlig455_020441 {REF} {Length: 571} {TRANSSPLICED} {Pfam: Subunit CCDC53 of WASH complex [PF10152.11, score=23.2]} {Human: ENSG00000254999, BRK1, BRICK1, SCAR/WAVE actin nucleating complex subunit, [RH, Score=87.8, Expect=4e-24]} {Mouse: ENSMUSG00000033940, Brk1, BRICK1, SCAR/WAVE actin-nucleating complex subunit, [RH, Score=88.6, Expect=2e-24]} {Dmel: FBgn0061198, HSPC300, Haematopoietic stem/progenitor cell protein 300, [RH, Score=85.5, Expect=2e-23]} {Celegans: WBGene00013308, nuo-3, NADH Ubiquinone Oxidoreductase, [RH, Score=70.1, Expect=2e-17]} {Smed: dd_Smed_v6_1835_0_1, dd_Smed_v6_1835_0_1, [RH, Score=68.2, Expect=6e-17]} {RNA1509_8330} {RNA1310_46221} {RNA815_31100}
2. MligTC455_44019 9461 197.1 Mlig455_048415, Mlig455_049057

Neo: -

Age: logFC(26M/2M)=-0.256

 BANF1 2.474 0.740 - - 0.958 0.776 -

Mlig455_048415 {REF} {Length: 814} {TRANSSPLICED} {Pfam: Barrier to autointegration factor [PF02961.16, score=144.2]; IMS family HHH motif [PF11798.10, score=25.6]} {Human: ENSG00000175334, BANF1, barrier to autointegration factor 1, [RH, Score=134, Expect=4e-42]} {Mouse: ENSMUSG00000024844, Banf1, barrier to autointegration factor 1, [RH, Score=133, Expect=5e-42]} {Dmel: FBgn0031977, baf, barrier to autointegration factor, [RH, Score=124, Expect=1e-38]} {Celegans: WBGene00000235, baf-1, Barrier-to-autointegration factor 1, [Score=95.9, Expect=2e-27]} {Smed: dd_Smed_v6_3123_0_1, dd_Smed_v6_3123_0_1, [RH, Score=127, Expect=6e-40]} {RNA1509_3184} {RNA1310_42545, RNA1509_3184} {RNA1509_3184, RNA815_21487}

Mlig455_049057 {REF} {Length: 814} {TRANSSPLICED} {Pfam: Barrier to autointegration factor [PF02961.16, score=144.8]; IMS family HHH motif [PF11798.10, score=25.3]} {Human: ENSG00000175334, BANF1, barrier to autointegration factor 1, [RH, Score=131, Expect=3e-41]} {Mouse: ENSMUSG00000024844, Banf1, barrier to autointegration factor 1, [RH, Score=130, Expect=4e-41]} {Dmel: FBgn0031977, baf, barrier to autointegration factor, [RH, Score=124, Expect=1e-38]} {Celegans: WBGene00000235, baf-1, Barrier-to-autointegration factor 1, [Score=95.5, Expect=2e-27]} {Smed: dd_Smed_v6_3123_0_1, dd_Smed_v6_3123_0_1, [RH, Score=127, Expect=7e-40]} {RNA1509_20472, RNA1509_26701, RNA1509_34501} {RNA1310_42545, RNA1509_20472, RNA1509_26701, RNA1509_34501} {RNA1509_20472, RNA1509_26701, RNA1509_34501, RNA815_21487}
3. MligTC455_50433 6772 141.08 Mlig455_052577, Mlig455_052592

Neo: -

Age: Down-Up-Up

 TNR 1.777 - - - 0.950 - 0.827

Mlig455_052577 {REF} {Length: 2810} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=125.6]; PAN domain [PF00024.28, score=20.6]} {Human: ENSG00000116147, TNR, tenascin R, [Score=109, Expect=4e-26]} {Mouse: ENSMUSG00000015829, Tnr, tenascin R, [Score=110, Expect=2e-26]} {Dmel: FBgn0034160, CG5550, [Score=102, Expect=9e-26]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=98.2, Expect=7e-23]} {RNA1509_15461} {RNA1310_26562} {RNA815_14700}

Mlig455_052592 {REF} {Length: 2429} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=125.6]; PAN domain [PF00024.28, score=20.6]} {Human: ENSG00000116147, TNR, tenascin R, [Score=109, Expect=4e-26]} {Mouse: ENSMUSG00000015829, Tnr, tenascin R, [Score=110, Expect=2e-26]} {Dmel: FBgn0034160, CG5550, [Score=102, Expect=9e-26]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=98.2, Expect=7e-23]} {RNA1509_15461} {RNA1310_26562} {RNA815_14700}
4. MligTC455_19486 1510 31.45 Mlig455_046176

Neo: -

Age: -

 1.689 - - - 0.953 - 0.736 Mlig455_046176 {REF} {Length: 3598} {TRANSSPLICED} {RNA1509_20225, RNA1509_28786, RNA1509_44147, RNA1509_45512} {RNA1310_37262, RNA1509_20225, RNA1509_28786, RNA1509_44147, RNA1509_45512} {RNA1509_20225, RNA1509_28786, RNA1509_44147, RNA1509_45512, RNA815_20538}
5. MligTC455_47405 1010 21.04 Mlig455_039770

Neo: -

Age: -

 SLC6A5 0.978 - - - - - 0.978 Mlig455_039770 {REF} {Length: 4100} {Pfam: Sodium:neurotransmitter symporter family [PF00209.20, score=640.0]} {Human: ENSG00000165970, SLC6A5, solute carrier family 6 member 5, [Score=537, Expect=0.0]} {Mouse: ENSMUSG00000039728, Slc6a5, solute carrier family 6 (neurotransmitter transporter, glycine), member 5, [Score=539, Expect=0.0]} {Dmel: FBgn0034911, CG5549, [Score=487, Expect=3e-158]} {Celegans: WBGene00004910, snf-11, Transporter, [Score=425, Expect=6e-141]} {Smed: dd_Smed_v6_4290_0_1, dd_Smed_v6_4290_0_1, [Score=500, Expect=2e-170]} {RNA1509_15175, RNA1509_22639, RNA1509_5227} {RNA1310_4097.1, RNA1509_15175, RNA1509_22639} {RNA1509_15175, RNA1509_22639, RNA815_1072.1}
6. MligTC455_35069 6900 143.75 Mlig455_025164, Mlig455_042303

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.376

 C3orf30, CCDC86 0.952 - - - 0.952 - -

Mlig455_025164 {REF} {Length: 875} {Human: ENSG00000163424, C3orf30, chromosome 3 open reading frame 30, [RH, Score=57.8, Expect=3e-09]} {RNA1310_138163}

Mlig455_042303 {REF} {Length: 1262} {TRANSSPLICED} {Pfam: Cgr1 family [PF03879.16, score=59.0]} {Human: ENSG00000110104, CCDC86, coiled-coil domain containing 86, [RH, Score=63.5, Expect=2e-12]} {Mouse: ENSMUSG00000024732, Ccdc86, coiled-coil domain containing 86, [RH, Score=52.0, Expect=2e-08]} {Dmel: FBgn0031040, CG14210, [RH, Score=50.8, Expect=6e-09]} {Celegans: WBGene00012739, Y40B1B.7, [RH, Score=45.1, Expect=6e-07]} {RNA1509_12585, RNA1509_1666, RNA1509_2211, RNA1509_422, RNA1509_60130} {RNA1310_60254.1, RNA1509_12585, RNA1509_2211, RNA1509_422, RNA1509_60130} {RNA1509_12585, RNA1509_2211, RNA1509_422, RNA1509_60130, RNA815_18180.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA