TomoSeq data search

Data search

Results for MligTC455_53520

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_53520	103	2.14	Mlig455_010193	Neo: - Age: -	CHD5	Mlig455_010193 {REF} {Length: 5974} {TRANSSPLICED} {Pfam: PHD-finger [PF00628.31, score=69.3]; Chromo (CHRromatin Organisation MOdifier) domain [PF00385.26, score=59.5]; PHD-like zinc-binding domain [PF13771.8, score=24.4]; PHD-finger [PF13831.8, score=22.7]} {Human: ENSG00000116254, CHD5, chromodomain helicase DNA binding protein 5, [Score=316, Expect=1e-92]; ENSG00000170004, CHD3, chromodomain helicase DNA binding protein 3, [Score=305, Expect=1e-88]; ENSG00000111642, CHD4, chromodomain helicase DNA binding protein 4, [Score=304, Expect=1e-88]; ENSG00000285238, AC006064.6, novel transcript, [Score=303, Expect=4e-88]} {Mouse: ENSMUSG00000005045, Chd5, chromodomain helicase DNA binding protein 5, [Score=320, Expect=4e-94]; ENSMUSG00000063870, Chd4, chromodomain helicase DNA binding protein 4, [Score=307, Expect=1e-89]} {Dmel: FBgn0262519, Mi-2, [Score=293, Expect=7e-85]} {Celegans: WBGene00000482, chd-3, Chromodomain-helicase-DNA-binding protein 3 homolog, [Score=269, Expect=5e-77]} {Smed: dd_Smed_v6_2331_0_1, dd_Smed_v6_2331_0_1, [Score=457, Expect=6e-144]} {RNA1509_2055} {RNA1310_619} {RNA815_1273.1}

Cluster

Total UMI counts

Global CPM

Transcripts

Cumulative graph for MligTC455_53520

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-3.586	1.996	0.53283	1.00000
RegionR2	-0.244	1.996	0.93149	1.00000
RegionR3	-0.955	1.996	0.98819	1.00000
RegionR4	-0.403	1.996	0.94665	1.00000
RegionR5	0.929	1.996	0.41802	0.77770
RegionR6	0.602	1.996	0.63344	1.00000
RegionR7	1.389	1.996	0.36416	0.99950
RegionR8	2.268	1.996	0.15170	0.70573

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-0.966	1.996	0.99993	1.00000
RegenerationR2	1.659	1.996	0.16122	0.59857
RegenerationR3	1.495	1.996	0.27610	0.70982
RegenerationR4	1.19	1.996	0.37997	0.80089
RegenerationR5	-0.272	1.996	0.79975	0.98844
RegenerationR6	0.852	1.996	0.47758	0.79007
RegenerationBL	-1.16	1.996	0.40745	0.77676
RegenerationTP	-0.013	1.996	0.98219	1.00000

Genes with expression patterns similar to MligTC455_53520

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_53520	103	2.14	Mlig455_010193	Neo: - Age: -	CHD5	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_010193 {REF} {Length: 5974} {TRANSSPLICED} {Pfam: PHD-finger [PF00628.31, score=69.3]; Chromo (CHRromatin Organisation MOdifier) domain [PF00385.26, score=59.5]; PHD-like zinc-binding domain [PF13771.8, score=24.4]; PHD-finger [PF13831.8, score=22.7]} {Human: ENSG00000116254, CHD5, chromodomain helicase DNA binding protein 5, [Score=316, Expect=1e-92]; ENSG00000170004, CHD3, chromodomain helicase DNA binding protein 3, [Score=305, Expect=1e-88]; ENSG00000111642, CHD4, chromodomain helicase DNA binding protein 4, [Score=304, Expect=1e-88]; ENSG00000285238, AC006064.6, novel transcript, [Score=303, Expect=4e-88]} {Mouse: ENSMUSG00000005045, Chd5, chromodomain helicase DNA binding protein 5, [Score=320, Expect=4e-94]; ENSMUSG00000063870, Chd4, chromodomain helicase DNA binding protein 4, [Score=307, Expect=1e-89]} {Dmel: FBgn0262519, Mi-2, [Score=293, Expect=7e-85]} {Celegans: WBGene00000482, chd-3, Chromodomain-helicase-DNA-binding protein 3 homolog, [Score=269, Expect=5e-77]} {Smed: dd_Smed_v6_2331_0_1, dd_Smed_v6_2331_0_1, [Score=457, Expect=6e-144]} {RNA1509_2055} {RNA1310_619} {RNA815_1273.1}
2.	MligTC455_45775	114	2.38	Mlig455_031567	Neo: - Age: - Region-enriched R6: 3.607/0.03886	NYNRIN	1.7	-	-	0.972	0.728	-	-	Mlig455_031567 {REF} {Length: 2560} {Pfam: Integrase zinc binding domain [PF17921.3, score=68.5]; Integrase core domain [PF00665.28, score=47.0]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=70.5, Expect=3e-12]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=61.6, Expect=1e-09]} {RNA1509_31401} {RNA1310_22154.2} {RNA815_10995}
3.	MligTC455_03556	34	0.7	Mlig455_037044	Neo: - Age: -		1.666	-	-	-	-	0.954	0.712	Mlig455_037044 {REF} {Length: 1030} {NoTransDecoderORF} {RNA1509_57090} {RNA1310_93213} {RNA815_9381.1}
4.	MligTC455_49192	131	2.74	Mlig455_023636	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.515	PITX2	1.663	0.701	-	-	-	0.962	-	Mlig455_023636 {REF} {Length: 2211} {Pfam: Homeodomain [PF00046.31, score=62.2]} {Human: ENSG00000164093, PITX2, paired like homeodomain 2, [Score=106, Expect=5e-26]; ENSG00000107859, PITX3, paired like homeodomain 3, [Score=105, Expect=9e-26]; ENSG00000069011, PITX1, paired like homeodomain 1, [Score=102, Expect=8e-25]} {Mouse: ENSMUSG00000028023, Pitx2, paired-like homeodomain transcription factor 2, [Score=106, Expect=3e-26]; ENSMUSG00000025229, Pitx3, paired-like homeodomain transcription factor 3, [Score=105, Expect=7e-26]; ENSMUSG00000021506, Pitx1, paired-like homeodomain transcription factor 1, [Score=103, Expect=4e-25]} {Dmel: FBgn0020912, Ptx1, [Score=110, Expect=1e-26]} {Celegans: WBGene00006766, unc-30, Homeobox protein unc-30, [Score=108, Expect=3e-27]} {Smed: dd_Smed_v6_15253_0_1, dd_Smed_v6_15253_0_1, [Score=108, Expect=5e-27]} {RNA1509_46043} {RNA1310_17678} {RNA815_20652}
5.	MligTC455_11836	23	0.47	Mlig455_002196	Neo: - Age: -		0.988	-	-	0.988	-	-	-	Mlig455_002196 {REF} {Length: 212} {NoTransDecoderORF} {RNA1509_39174} {RNA1310_96981.1} {RNA815_34070.1}
6.	MligTC455_06293	103	2.15	Mlig455_053860, Mlig455_053875, Mlig455_055343	Neo: - Age: -		0.97	-	-	-	-	0.970	-	Mlig455_053860 {REF} {Length: 469} {RNA1310_95227} {RNA815_45163} Mlig455_053875 {REF} {Length: 533} {RNA1310_95227} {RNA815_45163} Mlig455_055343 {REF} {Length: 526} {RNA1310_95227} {RNA815_45163}
7.	MligTC455_28446	134	2.79	Mlig455_061706	Neo: - Age: -		0.969	-	-	0.969	-	-	-	Mlig455_061706 {REF} {Length: 1760} {NoTransDecoderORF} {RNA1509_12781} {RNA1310_63.1} {RNA815_23.1}
8.	MligTC455_30855	58	1.2	Mlig455_034572	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-1.123 Region-enriched R6: 6.177/0.00004		0.969	-	-	0.969	-	-	-	Mlig455_034572 {REF} {Length: 4211} {Pfam: Aminotransferase class-V [PF00266.21, score=140.1]; Aminotransferase class I and II [PF00155.23, score=19.0]} {Celegans: WBGene00022195, Y71H2B.5, [Score=372, Expect=2e-116]} {Smed: dd_Smed_v6_16438_0_1, dd_Smed_v6_16438_0_1, [Score=470, Expect=4e-154]} {RNA1509_49509} {RNA1310_9857} {RNA815_17946}
9.	MligTC455_33312	53	1.1	Mlig455_014392, Mlig455_047712	Neo: - Age: Up-Down-Up	KLF5	0.967	-	-	0.967	-	-	-	Mlig455_014392 {REF} {Length: 1654} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=54.2]; Zinc-finger double domain [PF13465.8, score=44.3]; C2H2-type zinc finger [PF13894.8, score=28.7]} {Human: ENSG00000102554, KLF5, Kruppel like factor 5, [Score=144, Expect=1e-40]; ENSG00000105610, KLF1, Kruppel like factor 1, [Score=137, Expect=6e-38]} {Mouse: ENSMUSG00000005148, Klf5, Kruppel-like factor 5, [Score=136, Expect=5e-37]; ENSMUSG00000054191, Klf1, Kruppel-like factor 1 (erythroid), [Score=134, Expect=2e-36]; ENSMUSG00000003032, Klf4, Kruppel-like factor 4 (gut), [Score=130, Expect=8e-35]; ENSMUSG00000072294, Klf12, Kruppel-like factor 12, [Score=130, Expect=3e-35]; ENSMUSG00000025959, Klf7, Kruppel-like factor 7 (ubiquitous), [Score=130, Expect=1e-35]} {Dmel: FBgn0261705, CG42741, [Score=132, Expect=4e-36]} {Celegans: WBGene00018990, klf-1, Kruppel-Like Factor (Zinc finger protein), [Score=137, Expect=3e-37]} {Smed: dd_Smed_v6_12264_0_1, dd_Smed_v6_12264_0_1, [Score=140, Expect=4e-41]} {RNA1310_85496} Mlig455_047712 {REF} {Length: 1675} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=54.3]; Zinc-finger double domain [PF13465.8, score=44.1]; C2H2-type zinc finger [PF13894.8, score=28.8]} {Human: ENSG00000102554, KLF5, Kruppel like factor 5, [Score=142, Expect=7e-40]; ENSG00000105610, KLF1, Kruppel like factor 1, [Score=137, Expect=7e-38]} {Mouse: ENSMUSG00000005148, Klf5, Kruppel-like factor 5, [Score=136, Expect=5e-37]; ENSMUSG00000054191, Klf1, Kruppel-like factor 1 (erythroid), [Score=133, Expect=2e-36]; ENSMUSG00000003032, Klf4, Kruppel-like factor 4 (gut), [Score=131, Expect=8e-35]; ENSMUSG00000072294, Klf12, Kruppel-like factor 12, [Score=130, Expect=3e-35]} {Dmel: FBgn0261705, CG42741, [Score=132, Expect=4e-36]} {Celegans: WBGene00018990, klf-1, Kruppel-Like Factor (Zinc finger protein), [Score=137, Expect=4e-37]} {Smed: dd_Smed_v6_12264_0_1, dd_Smed_v6_12264_0_1, [Score=139, Expect=2e-40]} {RNA1310_85496}
10.	MligTC455_51842	25	0.53	Mlig455_023965	Neo: - Age: -		0.967	-	-	0.967	-	-	-	Mlig455_023965 {REF} {Length: 983} {RNA1310_64708} {RNA815_46410}
11.	MligTC455_30887	96	1.99	Mlig455_009606	Neo: - Age: Down-Up-Down Region-enriched R8: 4.157/0.04948 Region-enriched R2: 3.891/0.00660 Region-enriched R7: 3.804/0.00783		0.965	-	-	0.965	-	-	-	Mlig455_009606 {REF} {Length: 3404} {Pfam: CD34/Podocalyxin family [PF06365.14, score=18.4]} {RNA1509_53360} {RNA1310_3978.1} {RNA815_1194.1}
12.	MligTC455_40598	80	1.66	Mlig455_067214	Neo: - Age: -		0.961	-	-	0.961	-	-	-	Mlig455_067214 {REF} {Length: 647} {TRANSSPLICED} {RNA1509_10765} {RNA1310_31974} {RNA815_29280}
13.	MligTC455_51405	14	0.3	Mlig455_040732	Neo: - Age: -	TRPC6	0.961	-	-	-	-	0.961	-	Mlig455_040732 {REF} {Length: 2522} {Pfam: Ion transport protein [PF00520.33, score=44.1]} {Human: ENSG00000137672, TRPC6, transient receptor potential cation channel subfamily C member 6, [Score=75.9, Expect=1e-13]; ENSG00000133107, TRPC4, transient receptor potential cation channel subfamily C member 4, [Score=73.9, Expect=5e-13]} {Mouse: ENSMUSG00000070425, Xntrpc, Xndc1-transient receptor potential cation channel, subfamily C, member 2 readthrough, [Score=82.0, Expect=2e-15]; ENSMUSG00000100254, Trpc2, transient receptor potential cation channel, subfamily C, member 2, [Score=81.3, Expect=2e-15]} {Dmel: FBgn0005614, trpl, transient receptor potential-like, [Score=71.6, Expect=2e-12]} {Celegans: WBGene00006614, trp-1, Transient-receptor-potential-like protein, [Score=72.4, Expect=6e-13]} {Smed: dd_Smed_v6_15627_0_1, dd_Smed_v6_15627_0_1, [Score=82.8, Expect=4e-16]}
14.	MligTC455_29937	75	1.55	Mlig455_053384	Neo: - Age: -		0.959	-	-	-	-	0.959	-	Mlig455_053384 {REF} {Length: 3610} {NoTransDecoderORF} {RNA1509_57191} {RNA1310_45092} {RNA815_10095.1}
15.	MligTC455_15441	62	1.29	Mlig455_037158	Neo: - Age: -		0.957	-	-	-	-	0.957	-	Mlig455_037158 {REF} {Length: 2997} {Pfam: RNA repair pathway DNA polymerase beta family [PF10127.11, score=20.8]} {RNA1509_39460} {RNA1310_16073.2} {RNA815_15926}
16.	MligTC455_27184	603	12.55	Mlig455_040770	Neo: - Age: -	TMEM19	0.956	-	-	-	0.956	-	-	Mlig455_040770 {REF} {Length: 1063} {Pfam: Integral membrane protein DUF92 [PF01940.18, score=220.2]} {Human: ENSG00000139291, TMEM19, transmembrane protein 19, [Score=215, Expect=7e-68]} {Mouse: ENSMUSG00000069520, Tmem19, transmembrane protein 19, [Score=200, Expect=2e-62]} {Dmel: FBgn0036353, CG10171, [Score=197, Expect=4e-61]} {Smed: dd_Smed_v6_10441_0_1, dd_Smed_v6_10441_0_1, [Score=209, Expect=3e-66]} {RNA1509_13808} {RNA1310_30059} {RNA815_44043}
17.	MligTC455_13038	60	1.25	Mlig455_044479	Neo: - Age: - Region-enriched R6: 4.393/0.00410		0.954	-	-	0.954	-	-	-	Mlig455_044479 {REF} {Length: 663}
18.	MligTC455_50823	13	0.28	Mlig455_052398, Mlig455_052414	Neo: - Age: -		0.953	-	-	-	-	0.953	-	Mlig455_052398 {REF} {Length: 582} {NoTransDecoderORF} {RNA1509_43398} {RNA1310_11789.1} {RNA815_4854} Mlig455_052414 {REF} {Length: 288} {NoTransDecoderORF} {RNA1509_43398} {RNA1310_11789.1} {RNA815_4854}
19.	MligTC455_15074	248	5.16	Mlig455_026600, Mlig455_042806	Neo: - Age: - Region-enriched R6: 5.209/0.00003	B3GNT6	0.952	-	-	0.952	-	-	-	Mlig455_026600 {REF} {Length: 1811} {Pfam: Galactosyltransferase [PF01762.23, score=127.7]} {Human: ENSG00000198488, B3GNT6, UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6, [Score=110, Expect=4e-26]; ENSG00000183778, B3GALT5, beta-1,3-galactosyltransferase 5, [Score=109, Expect=3e-26]} {Mouse: ENSMUSG00000074004, B3gnt6, UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase), [Score=108, Expect=2e-25]} {Dmel: FBgn0035558, CG11357, [Score=145, Expect=6e-39]} {Celegans: WBGene00007104, B0024.15, Hexosyltransferase, [Score=68.6, Expect=1e-12]} {Smed: dd_Smed_v6_4748_0_1, dd_Smed_v6_4748_0_1, [RH, Score=261, Expect=5e-84]} {RNA1509_8878} {RNA1310_19821, RNA1509_8878} {RNA1509_8878, RNA815_7886.1} Mlig455_042806 {REF} {Length: 1822} {Pfam: Galactosyltransferase [PF01762.23, score=127.6]} {Human: ENSG00000198488, B3GNT6, UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6, [Score=110, Expect=4e-26]; ENSG00000183778, B3GALT5, beta-1,3-galactosyltransferase 5, [Score=109, Expect=2e-26]} {Mouse: ENSMUSG00000074004, B3gnt6, UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase), [Score=108, Expect=2e-25]} {Dmel: FBgn0035558, CG11357, [Score=145, Expect=6e-39]} {Celegans: WBGene00007104, B0024.15, Hexosyltransferase, [Score=68.9, Expect=1e-12]} {Smed: dd_Smed_v6_4748_0_1, dd_Smed_v6_4748_0_1, [RH, Score=261, Expect=4e-84]} {RNA1509_8878} {RNA1310_19821} {RNA815_7886.1}
20.	MligTC455_19567	76	1.59	Mlig455_017855, Mlig455_047877	Neo: - Age: - Region-enriched R2: 7.793/0.00005		0.95	-	-	-	-	0.950	-	Mlig455_017855 {REF} {Length: 1874} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=26.0]} {Smed: dd_Smed_v6_7534_0_1, dd_Smed_v6_7534_0_1, [RH, Score=179, Expect=3e-51]} {RNA1509_52053} {RNA1310_13207} {RNA815_13534} Mlig455_047877 {REF} {Length: 1820} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=28.8]} {Smed: dd_Smed_v6_7534_0_1, dd_Smed_v6_7534_0_1, [RH, Score=179, Expect=2e-51]} {RNA1509_52053} {RNA1310_13207} {RNA815_13534}