TomoSeq data search

Data search

Results for MligTC455_49192

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_49192

131

2.74

Mlig455_023636

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.515

PITX2

Mlig455_023636 {REF} {Length: 2211} {Pfam: Homeodomain [PF00046.31, score=62.2]} {Human: ENSG00000164093, PITX2, paired like homeodomain 2, [Score=106, Expect=5e-26]; ENSG00000107859, PITX3, paired like homeodomain 3, [Score=105, Expect=9e-26]; ENSG00000069011, PITX1, paired like homeodomain 1, [Score=102, Expect=8e-25]} {Mouse: ENSMUSG00000028023, Pitx2, paired-like homeodomain transcription factor 2, [Score=106, Expect=3e-26]; ENSMUSG00000025229, Pitx3, paired-like homeodomain transcription factor 3, [Score=105, Expect=7e-26]; ENSMUSG00000021506, Pitx1, paired-like homeodomain transcription factor 1, [Score=103, Expect=4e-25]} {Dmel: FBgn0020912, Ptx1, [Score=110, Expect=1e-26]} {Celegans: WBGene00006766, unc-30, Homeobox protein unc-30, [Score=108, Expect=3e-27]} {Smed: dd_Smed_v6_15253_0_1, dd_Smed_v6_15253_0_1, [Score=108, Expect=5e-27]} {RNA1509_46043} {RNA1310_17678} {RNA815_20652}

Cumulative graph for MligTC455_49192

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-4.331	2.201	0.39680	1.00000
RegionR2	-0.301	2.201	0.93055	1.00000
RegionR3	-0.128	2.201	0.89515	1.00000
RegionR4	0.498	2.201	0.64959	0.95256
RegionR5	1.337	2.201	0.10890	0.32340
RegionR6	1.642	2.201	0.05219	0.42844
RegionR7	-0.674	2.201	0.97393	1.00000
RegionR8	1.957	2.201	0.11367	0.62406

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.392	2.201	1.00000	1.00000
RegenerationR2	1.441	2.201	0.01757	0.21778
RegenerationR3	1.195	2.201	0.11747	0.53392
RegenerationR4	0.898	2.201	0.25139	0.69976
RegenerationR5	-0.996	2.201	0.12625	0.53007
RegenerationR6	-0.41	2.201	0.53861	0.83216
RegenerationBL	-0.064	2.201	0.95595	1.00000
RegenerationTP	0.55	2.201	0.59415	0.95712

Genes with expression patterns similar to MligTC455_49192

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_49192	131	2.74	Mlig455_023636	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.515	PITX2	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_023636 {REF} {Length: 2211} {Pfam: Homeodomain [PF00046.31, score=62.2]} {Human: ENSG00000164093, PITX2, paired like homeodomain 2, [Score=106, Expect=5e-26]; ENSG00000107859, PITX3, paired like homeodomain 3, [Score=105, Expect=9e-26]; ENSG00000069011, PITX1, paired like homeodomain 1, [Score=102, Expect=8e-25]} {Mouse: ENSMUSG00000028023, Pitx2, paired-like homeodomain transcription factor 2, [Score=106, Expect=3e-26]; ENSMUSG00000025229, Pitx3, paired-like homeodomain transcription factor 3, [Score=105, Expect=7e-26]; ENSMUSG00000021506, Pitx1, paired-like homeodomain transcription factor 1, [Score=103, Expect=4e-25]} {Dmel: FBgn0020912, Ptx1, [Score=110, Expect=1e-26]} {Celegans: WBGene00006766, unc-30, Homeobox protein unc-30, [Score=108, Expect=3e-27]} {Smed: dd_Smed_v6_15253_0_1, dd_Smed_v6_15253_0_1, [Score=108, Expect=5e-27]} {RNA1509_46043} {RNA1310_17678} {RNA815_20652}
2.	MligTC455_27279	104	2.17	Mlig455_052989, Mlig455_053048	Neo: - Age: Up-Down-Up	ANK2	1.881	-	0.926	-	-	0.955	-	Mlig455_052989 {REF} {Length: 4886} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=154.0]; Ankyrin repeat [PF00023.32, score=133.3]; Ankyrin repeats (many copies) [PF13637.8, score=116.0]; Ankyrin repeat [PF13606.8, score=101.5]; Ankyrin repeats (many copies) [PF13857.8, score=84.2]; Mab-21 protein [PF03281.16, score=24.8]} {Human: ENSG00000145362, ANK2, ankyrin 2, [Score=164, Expect=3e-40]} {Mouse: ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=158, Expect=2e-38]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=159, Expect=1e-38]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=149, Expect=8e-36]} {Smed: dd_Smed_v6_10835_0_2, dd_Smed_v6_10835_0_2, [Score=160, Expect=1e-39]} {RNA1509_49840} {RNA1310_24047} {RNA815_2400.1} Mlig455_053048 {REF} {Length: 5337} {Pfam: Mab-21 protein [PF03281.16, score=25.9]} {RNA1509_57692} {RNA1310_3556, RNA1509_57692} {RNA1509_57692, RNA815_2305}
3.	MligTC455_53520	103	2.14	Mlig455_010193	Neo: - Age: -	CHD5	1.663	0.701	-	-	-	0.962	-	Mlig455_010193 {REF} {Length: 5974} {TRANSSPLICED} {Pfam: PHD-finger [PF00628.31, score=69.3]; Chromo (CHRromatin Organisation MOdifier) domain [PF00385.26, score=59.5]; PHD-like zinc-binding domain [PF13771.8, score=24.4]; PHD-finger [PF13831.8, score=22.7]} {Human: ENSG00000116254, CHD5, chromodomain helicase DNA binding protein 5, [Score=316, Expect=1e-92]; ENSG00000170004, CHD3, chromodomain helicase DNA binding protein 3, [Score=305, Expect=1e-88]; ENSG00000111642, CHD4, chromodomain helicase DNA binding protein 4, [Score=304, Expect=1e-88]; ENSG00000285238, AC006064.6, novel transcript, [Score=303, Expect=4e-88]} {Mouse: ENSMUSG00000005045, Chd5, chromodomain helicase DNA binding protein 5, [Score=320, Expect=4e-94]; ENSMUSG00000063870, Chd4, chromodomain helicase DNA binding protein 4, [Score=307, Expect=1e-89]} {Dmel: FBgn0262519, Mi-2, [Score=293, Expect=7e-85]} {Celegans: WBGene00000482, chd-3, Chromodomain-helicase-DNA-binding protein 3 homolog, [Score=269, Expect=5e-77]} {Smed: dd_Smed_v6_2331_0_1, dd_Smed_v6_2331_0_1, [Score=457, Expect=6e-144]} {RNA1509_2055} {RNA1310_619} {RNA815_1273.1}
4.	MligTC455_37934	26	0.54	Mlig455_008883, Mlig455_049435	Neo: - Age: -		0.981	-	-	-	-	0.981	-	Mlig455_008883 {REF} {Length: 548} {Pfam: Homeodomain-like domain [PF13384.8, score=18.9]} {Smed: dd_Smed_v6_65697_0_1, dd_Smed_v6_65697_0_1, [Score=41.6, Expect=1e-05]} {RNA1509_53194} {RNA1310_60636} {RNA815_29520} Mlig455_049435 {REF} {Length: 838} {NoTransDecoderORF} {RNA1509_53194} {RNA1310_47725} {RNA815_50191}
5.	MligTC455_48490	40	0.84	Mlig455_020090	Neo: - Age: -		0.967	-	-	-	-	0.967	-	Mlig455_020090 {REF} {Length: 2619} {RNA1310_71062} {RNA815_63441}
6.	MligTC455_18093	42	0.87	Mlig455_056859	Neo: - Age: -	ARL3	0.959	-	-	-	-	0.959	-	Mlig455_056859 {REF} {Length: 1943} {Pfam: ADP-ribosylation factor family [PF00025.23, score=67.8]; 50S ribosome-binding GTPase [PF01926.25, score=26.5]; G-protein alpha subunit [PF00503.22, score=18.9]} {Human: ENSG00000138175, ARL3, ADP ribosylation factor like GTPase 3, [Score=67.8, Expect=2e-13]; ENSG00000122644, ARL4A, ADP ribosylation factor like GTPase 4A, [Score=67.8, Expect=3e-13]; ENSG00000143761, ARF1, ADP ribosylation factor 1, [Score=65.5, Expect=1e-12]; ENSG00000134287, ARF3, ADP ribosylation factor 3, [Score=65.1, Expect=2e-12]; ENSG00000168374, ARF4, ADP ribosylation factor 4, [Score=65.1, Expect=2e-12]; ENSG00000188042, ARL4C, ADP ribosylation factor like GTPase 4C, [Score=64.7, Expect=4e-12]} {Mouse: ENSMUSG00000047446, Arl4a, ADP-ribosylation factor-like 4A, [Score=67.4, Expect=2e-13]; ENSMUSG00000025035, Arl3, ADP-ribosylation factor-like 3, [Score=66.6, Expect=4e-13]; ENSMUSG00000048076, Arf1, ADP-ribosylation factor 1, [Score=65.5, Expect=1e-12]; ENSMUSG00000051853, Arf3, ADP-ribosylation factor 3, [Score=65.1, Expect=1e-12]; ENSMUSG00000049866, Arl4c, ADP-ribosylation factor-like 4C, [Score=64.3, Expect=3e-12]} {Dmel: FBgn0013749, Arf102F, ADP ribosylation factor at 102F, [Score=66.6, Expect=3e-13]} {Celegans: WBGene00000184, arf-6, ADP-Ribosylation Factor related, [Score=65.5, Expect=5e-13]} {Smed: dd_Smed_v6_2013_0_1, dd_Smed_v6_2013_0_1, [Score=78.6, Expect=7e-18]} {RNA1310_41790} {RNA815_35492}
7.	MligTC455_15441	62	1.29	Mlig455_037158	Neo: - Age: -		0.953	-	-	-	-	0.953	-	Mlig455_037158 {REF} {Length: 2997} {Pfam: RNA repair pathway DNA polymerase beta family [PF10127.11, score=20.8]} {RNA1509_39460} {RNA1310_16073.2} {RNA815_15926}
8.	MligTC455_27193	38	0.8	Mlig455_030171	Neo: - Age: -		0.953	-	-	-	-	0.953	-	Mlig455_030171 {REF} {Length: 1147} {NoTransDecoderORF} {RNA1509_43103} {RNA1310_34306} {RNA815_26067.1}
9.	MligTC455_39036	111	2.31	Mlig455_025027	Neo: - Age: -	MID1	0.953	-	0.953	-	-	-	-	Mlig455_025027 {REF} {Length: 3351} {TRANSSPLICED} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=38.7]; RING-type zinc-finger [PF13445.8, score=36.6]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=36.0]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=33.1]; zinc-RING finger domain [PF14634.8, score=28.8]; Ring finger domain [PF13639.8, score=28.7]; zinc finger of C3HC4-type, RING [PF15227.8, score=28.5]; Prokaryotic RING finger family 4 [PF14447.8, score=23.7]; U-box domain [PF04564.17, score=21.4]; B-box zinc finger [PF00643.26, score=21.1]} {Human: ENSG00000101871, MID1, midline 1, [RH, Score=80.9, Expect=3e-15]} {Mouse: ENSMUSG00000035299, Mid1, midline 1, [Score=83.2, Expect=5e-16]; ENSMUSG00000000266, Mid2, midline 2, [Score=82.4, Expect=9e-16]} {Dmel: FBgn0265356, tn, thin, [Score=54.7, Expect=3e-07]} {Celegans: WBGene00016539, madd-2, [Score=63.9, Expect=3e-10]} {Smed: dd_Smed_v6_6290_0_1, dd_Smed_v6_6290_0_1, [Score=56.6, Expect=3e-08]} {RNA1509_31988} {RNA1310_8538, RNA1509_31988} {RNA1509_31988, RNA815_4019.1}
10.	MligTC455_39719	44	0.92	Mlig455_063602	Neo: - Age: -	MPDZ	0.952	-	-	-	-	0.952	-	Mlig455_063602 {REF} {Length: 2307} {Pfam: PDZ domain [PF00595.26, score=187.6]; PDZ domain [PF17820.3, score=85.4]; PDZ domain [PF13180.8, score=85.1]} {Human: ENSG00000107186, MPDZ, multiple PDZ domain crumbs cell polarity complex component, [Score=244, Expect=9e-70]} {Mouse: ENSMUSG00000028402, Mpdz, multiple PDZ domain protein, [Score=237, Expect=7e-67]} {Dmel: FBgn0263289, scrib, scribbled, [Score=88.6, Expect=6e-18]} {Celegans: WBGene00003404, mpz-1, Multiple PDZ domain protein, [Score=137, Expect=7e-35]} {Smed: dd_Smed_v6_4520_0_1, dd_Smed_v6_4520_0_1, [Score=147, Expect=2e-37]} {RNA1310_8275.3} {RNA815_16615}
11.	MligTC455_50423	77	1.61	Mlig455_006067	Neo: - Age: -	ANKRD50	0.951	-	-	-	-	0.951	-	Mlig455_006067 {REF} {Length: 3852} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=70.0]; Ankyrin repeats (many copies) [PF13637.8, score=67.2]; Mab-21 protein [PF03281.16, score=42.4]; Ankyrin repeat [PF13606.8, score=40.8]; Ankyrin repeats (many copies) [PF13857.8, score=37.3]; Ankyrin repeat [PF00023.32, score=32.6]} {Human: ENSG00000151458, ANKRD50, ankyrin repeat domain 50, [Score=82.8, Expect=2e-15]} {Mouse: ENSMUSG00000044864, Ankrd50, ankyrin repeat domain 50, [Score=87.4, Expect=7e-17]} {Dmel: FBgn0043884, mask, multiple ankyrin repeats single KH domain, [Score=76.3, Expect=1e-13]} {Celegans: WBGene00011240, R11A8.7, Ankyrin repeat and KH domain-containing protein R11A8.7, [Score=65.1, Expect=2e-10]} {Smed: dd_Smed_v6_6779_0_1, dd_Smed_v6_6779_0_1, [Score=82.4, Expect=9e-16]} {RNA1509_27730} {RNA1310_30361} {RNA815_2426.1}
12.	MligTC455_22824	168	3.51	Mlig455_018489	Neo: - Age: Down-Down-Down, logFC(26M/2M)=-0.696		0.95	-	0.950	-	-	-	-	Mlig455_018489 {REF} {Length: 3569} {RNA1509_31773} {RNA1310_14428} {RNA815_6473}
13.	MligTC455_27204	273	5.69	Mlig455_056781	Neo: - Age: Down-Up-Down	ACTG1	0.95	-	-	-	0.950	-	-	Mlig455_056781 {REF} {Length: 1797} {Pfam: Actin [PF00022.21, score=478.0]} {Human: ENSG00000184009, ACTG1, actin gamma 1, [Score=702, Expect=0.0]; ENSG00000075624, ACTB, actin beta, [Score=700, Expect=0.0]; ENSG00000163017, ACTG2, actin, gamma 2, smooth muscle, enteric, [Score=682, Expect=0.0]; ENSG00000107796, ACTA2, actin, alpha 2, smooth muscle, aorta, [Score=682, Expect=0.0]; ENSG00000159251, ACTC1, actin, alpha, cardiac muscle 1, [Score=682, Expect=0.0]; ENSG00000143632, ACTA1, actin, alpha 1, skeletal muscle, [Score=681, Expect=0.0]; ENSG00000169067, ACTBL2, actin, beta like 2, [Score=672, Expect=0.0]} {Mouse: ENSMUSG00000062825, Actg1, actin, gamma, cytoplasmic 1, [Score=702, Expect=0.0]; ENSMUSG00000029580, Actb, actin, beta, [Score=700, Expect=0.0]; ENSMUSG00000035783, Acta2, actin, alpha 2, smooth muscle, aorta, [Score=682, Expect=0.0]; ENSMUSG00000068614, Actc1, actin, alpha, cardiac muscle 1, [Score=682, Expect=0.0]; ENSMUSG00000059430, Actg2, actin, gamma 2, smooth muscle, enteric, [Score=682, Expect=0.0]; ENSMUSG00000031972, Acta1, actin, alpha 1, skeletal muscle, [Score=681, Expect=0.0]; ENSMUSG00000055194, Actbl2, actin, beta-like 2, [Score=678, Expect=0.0]} {Dmel: FBgn0000047, Act88F, Actin 88F, [Score=696, Expect=0.0]} {Celegans: WBGene00000063, act-1, Actin-1, [Score=702, Expect=0.0]} {Smed: dd_Smed_v6_3_0_1, dd_Smed_v6_3_0_1, [Score=692, Expect=0.0]} {RNA1509_12157, RNA1509_50341} {RNA1310_20267.2, RNA1509_50341} {RNA1509_50341, RNA815_4929.3}

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