M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_53592

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_53592 69 1.43 Mlig455_002033

Neo: -

Age: Down-Up-Up

 Mlig455_002033 {REF} {Length: 1968} {Pfam: Tetraspanin family [PF00335.22, score=27.4]} {RNA1509_42415} {RNA1310_22096} {RNA815_22407}

Cumulative graph for MligTC455_53592

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.42 1.735 0.99990 1.00000
RegionR2 -0.936 1.735 0.92768 1.00000
RegionR3 1.49 1.735 0.21006 0.75151
RegionR4 3.434 1.735 0.01333 0.07543
RegionR5 0.796 1.735 0.48110 0.84473
RegionR6 1.176 1.735 0.33472 0.92253
RegionR7 -0.087 1.735 0.81033 1.00000
RegionR8 -4.453 1.735 0.99957 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.01 1.735 0.99997 1.00000
RegenerationR2 -3.251 1.735 0.02363 0.25248
RegenerationR3 -1.285 1.735 0.18950 0.62476
RegenerationR4 -0.914 1.735 0.35838 0.78664
RegenerationR5 0.16 1.735 0.86973 1.00000
RegenerationR6 -0.208 1.735 0.84302 0.99734
RegenerationBL 2.045 1.735 0.26489 0.62345
RegenerationTP 3.338 1.735 0.11421 0.51812


Genes with expression patterns similar to MligTC455_53592

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_53592 69 1.43 Mlig455_002033

Neo: -

Age: Down-Up-Up

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_002033 {REF} {Length: 1968} {Pfam: Tetraspanin family [PF00335.22, score=27.4]} {RNA1509_42415} {RNA1310_22096} {RNA815_22407}
2. MligTC455_39358 70 1.46 Mlig455_052566, Mlig455_065351

Neo: Germline

Age: Down-Down-Down, logFC(26M/2M)=-1.082

 2.599 - - 0.975 0.802 0.822 -

Mlig455_052566 {REF} {Length: 1175} {NoTransDecoderORF} {RNA1310_50540.1}

Mlig455_065351 {REF} {Length: 1133} {NoTransDecoderORF} {RNA1310_50540.1}
3. MligTC455_30344 114 2.38 Mlig455_029580

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.485

 TRAF6 1.74 - - - - 0.759 0.981 Mlig455_029580 {REF} {Length: 9635} {Pfam: TRAF-type zinc finger [PF02176.20, score=40.4]} {Human: ENSG00000175104, TRAF6, TNF receptor associated factor 6, [Score=91.7, Expect=4e-19]} {Mouse: ENSMUSG00000026942, Traf2, TNF receptor-associated factor 2, [Score=89.4, Expect=1e-18]; ENSMUSG00000027164, Traf6, TNF receptor-associated factor 6, [Score=86.7, Expect=1e-17]; ENSMUSG00000021277, Traf3, TNF receptor-associated factor 3, [Score=86.3, Expect=2e-17]} {Smed: dd_Smed_v6_168_0_1, dd_Smed_v6_168_0_1, [Score=91.7, Expect=1e-19]} {RNA1509_57505, RNA1509_8906} {RNA1310_1712.2, RNA1509_57505, RNA1509_8906} {RNA1509_57505, RNA1509_8906, RNA815_474.1}
4. MligTC455_11136 29 0.6 Mlig455_018981

Neo: -

Age: -

 PRR9 0.972 - - - 0.972 - - Mlig455_018981 {REF} {Length: 597} {Human: ENSG00000203783, PRR9, proline rich 9, [Score=47.0, Expect=3e-07]} {RNA1509_32275, RNA1509_8559} {RNA1310_9567, RNA1509_32275} {RNA1509_32275, RNA815_3281}
5. MligTC455_50426 365 7.61 Mlig455_027787

Neo: -

Age: -

 FLAD1 0.969 - - 0.969 - - - Mlig455_027787 {REF} {Length: 2692} {TRANSSPLICED} {Pfam: Probable molybdopterin binding domain [PF00994.26, score=111.3]; Phosphoadenosine phosphosulfate reductase family [PF01507.21, score=29.4]} {Human: ENSG00000160688, FLAD1, flavin adenine dinucleotide synthetase 1, [Score=247, Expect=1e-75]} {Mouse: ENSMUSG00000042642, Flad1, flavin adenine dinucleotide synthetase 1, [Score=250, Expect=1e-76]} {Dmel: FBgn0032522, CG16848, [Score=60.1, Expect=8e-10]} {Celegans: WBGene00011271, flad-1, Probable FAD synthase Molybdenum cofactor biosynthesis protein-like region FAD synthase region, [Score=205, Expect=7e-60]} {Smed: dd_Smed_v6_8204_0_1, dd_Smed_v6_8204_0_1, [Score=233, Expect=3e-71]} {RNA1509_48770} {RNA1310_9199.1} {RNA815_5028}
6. MligTC455_41524 525 10.94 Mlig455_062262

Neo: -

Age: logFC(26M/2M)=-0.315

 ANGPTL1 0.966 - - - - - 0.966 Mlig455_062262 {REF} {Length: 2899} {TRANSSPLICED} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=65.9]} {Human: ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=70.9, Expect=3e-12]; ENSG00000171819, ANGPTL7, angiopoietin like 7, [Score=70.5, Expect=2e-12]} {Mouse: ENSMUSG00000033544, Angptl1, angiopoietin-like 1, [Score=69.3, Expect=6e-12]} {Dmel: FBgn0087011, CG41520, [Score=60.8, Expect=3e-09]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=72.8, Expect=3e-13]} {RNA1509_11668} {RNA1310_470.1} {RNA815_3238.1}
7. MligTC455_09629 143 2.98 Mlig455_020832

Neo: Germline

Age: Up-Down-Down

Region-specific R4: 5.708

Regeneration-downregulated R4: -6.079

Regeneration-depleted R4: -6.079

 FBXL7 0.964 - - 0.964 - - - Mlig455_020832 {REF} {Length: 6862} {TRANSSPLICED} {Pfam: F-box-like [PF12937.9, score=48.2]; F-box domain [PF00646.35, score=34.6]} {Human: ENSG00000183580, FBXL7, F-box and leucine rich repeat protein 7, [Score=61.2, Expect=2e-09]} {Mouse: ENSMUSG00000043556, Fbxl7, F-box and leucine-rich repeat protein 7, [Score=62.0, Expect=1e-09]} {Dmel: FBgn0033639, CG9003, [Score=61.2, Expect=1e-09]} {Smed: dd_Smed_v6_14890_0_1, dd_Smed_v6_14890_0_1, [Score=50.1, Expect=3e-06]} {RNA1509_20251} {RNA1310_15253.1} {RNA815_2520.1}
8. MligTC455_14931 126 2.62 Mlig455_017837

Neo: Int S/G2/M

Age: -

 ZFAND1 0.964 - - 0.964 - - - Mlig455_017837 {REF} {Length: 1432} {TRANSSPLICED} {Pfam: AN1-like Zinc finger [PF01428.18, score=50.5]} {Human: ENSG00000104231, ZFAND1, zinc finger AN1-type containing 1, [RH, Score=120, Expect=8e-32]} {Mouse: ENSMUSG00000039795, Zfand1, zinc finger, AN1-type domain 1, [RH, Score=103, Expect=1e-25]} {Dmel: FBgn0031535, CG12795, [Score=64.7, Expect=8e-12]} {Celegans: WBGene00000097, aip-1, Arsenite Inducible Protein, [Score=64.7, Expect=3e-12]} {Smed: dd_Smed_v6_12611_0_1, dd_Smed_v6_12611_0_1, [RH, Score=79.7, Expect=2e-17]} {RNA1509_43206} {RNA1310_39084} {RNA815_24443}
9. MligTC455_37512 176 3.67 Mlig455_048342

Neo: -

Age: -

Region-enriched R4: 2.945/0.01181

 SALL1 0.962 - - - 0.962 - - Mlig455_048342 {REF} {Length: 2904} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=84.9]; C2H2-type zinc finger [PF13894.8, score=75.3]; Zinc-finger double domain [PF13465.8, score=64.7]; Zinc-finger of C2H2 type [PF12874.9, score=58.4]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=43.1]; C2H2-type zinc finger [PF13912.8, score=21.9]} {Human: ENSG00000103449, SALL1, spalt like transcription factor 1, [RH, Score=125, Expect=2e-29]} {Mouse: ENSMUSG00000031665, Sall1, spalt like transcription factor 1, [Score=125, Expect=1e-29]} {Dmel: FBgn0038047, CG5245, [Score=105, Expect=8e-24]} {Celegans: WBGene00021931, Y55F3AM.14, [Score=97.4, Expect=5e-21]} {Smed: dd_Smed_v6_14176_0_1, dd_Smed_v6_14176_0_1, [Score=107, Expect=2e-24]} {RNA1509_34185} {RNA1310_7579} {RNA815_11290}
10. MligTC455_52571 122 2.54 Mlig455_019376, Mlig455_019599

Neo: -

Age: Down-Up-Up

 0.96 - - - - 0.960 -

Mlig455_019376 {REF} {Length: 2305} {NoTransDecoderORF} {RNA1509_52124} {RNA1310_34899, RNA1509_52124} {RNA1509_52124, RNA815_4169}

Mlig455_019599 {REF} {Length: 785} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_52124} {RNA1310_34899} {RNA815_4169}
11. MligTC455_08721 35 0.72 Mlig455_059853

Neo: Irradiation

Age: -

 0.956 - - 0.956 - - - Mlig455_059853 {REF} {Length: 551} {Pfam: Conotoxin O-superfamily [PF08087.13, score=18.9]} {RNA1509_14035} {RNA1310_35367.2, RNA1509_14035} {RNA1509_14035, RNA815_16684.1}
12. MligTC455_17088 56 1.16 Mlig455_022778

Neo: -

Age: logFC(26M/2M)=-0.737

 0.956 - - 0.956 - - - Mlig455_022778 {REF} {Length: 2080} {RNA1509_56619} {RNA1310_21133.1} {RNA815_8631.1}
13. MligTC455_13505 132 2.74 Mlig455_027944

Neo: -

Age: Up-Down-Down

 KCND2 0.955 - - - - 0.955 - Mlig455_027944 {REF} {Length: 4404} {TRANSSPLICED} {Pfam: Ion transport protein [PF00520.33, score=127.7]; BTB/POZ domain [PF02214.24, score=91.1]; Ion channel [PF07885.18, score=49.3]; Shal-type voltage-gated potassium channels, N-terminal [PF11601.10, score=48.9]; Domain of unknown function (DUF3399) [PF11879.10, score=43.6]; BTB/POZ domain [PF16017.7, score=28.0]} {Human: ENSG00000184408, KCND2, potassium voltage-gated channel subfamily D member 2, [RH, Score=719, Expect=0.0]; ENSG00000171385, KCND3, potassium voltage-gated channel subfamily D member 3, [RH, Score=711, Expect=0.0]; ENSG00000102057, KCND1, potassium voltage-gated channel subfamily D member 1, [RH, Score=691, Expect=0.0]} {Mouse: ENSMUSG00000060882, Kcnd2, potassium voltage-gated channel, Shal-related family, member 2, [RH, Score=716, Expect=0.0]; ENSMUSG00000040896, Kcnd3, potassium voltage-gated channel, Shal-related family, member 3, [RH, Score=712, Expect=0.0]; ENSMUSG00000009731, Kcnd1, potassium voltage-gated channel, Shal-related family, member 1, [RH, Score=694, Expect=0.0]} {Dmel: FBgn0005564, Shal, Shaker cognate l, [RH, Score=747, Expect=0.0]} {Celegans: WBGene00022240, shl-1, SHaL family of potassium channels, [RH, Score=712, Expect=0.0]} {Smed: dd_Smed_v6_15876_0_1, dd_Smed_v6_15876_0_1, [RH, Score=716, Expect=0.0]} {RNA1509_23965} {RNA1310_7319} {RNA815_9248}
14. MligTC455_42439 40 0.83 Mlig455_059201

Neo: -

Age: -

 BTBD19 0.954 - - - - 0.954 - Mlig455_059201 {REF} {Length: 1834} {Pfam: BTB/POZ domain [PF00651.33, score=56.0]; BTB And C-terminal Kelch [PF07707.17, score=36.6]} {Human: ENSG00000222009, BTBD19, BTB domain containing 19, [RH, Score=162, Expect=2e-46]} {Mouse: ENSMUSG00000073771, Btbd19, BTB (POZ) domain containing 19, [Score=147, Expect=9e-41]} {Dmel: FBgn0030228, BTBD9, BTB (POZ) domain containing 9, [Score=69.3, Expect=2e-12]} {Celegans: WBGene00015463, hpo-9, [Score=53.9, Expect=1e-07]} {Smed: dd_Smed_v6_11553_0_1, dd_Smed_v6_11553_0_1, [RH, Score=171, Expect=2e-50]} {RNA1310_136515}
15. MligTC455_49115 61 1.27 Mlig455_069545

Neo: -

Age: -

 0.953 - - 0.953 - - - Mlig455_069545 {REF} {Length: 3069} {RNA1509_57667} {RNA1310_15532} {RNA815_9856}
16. MligTC455_49201 7138 148.7 Mlig455_010810

Neo: -

Age: Down-Up-Down

 RHOA 0.953 - - - - 0.953 - Mlig455_010810 {REF} {Length: 2111} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=195.8]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=81.4]; ADP-ribosylation factor family [PF00025.23, score=41.1]; Elongation factor Tu GTP binding domain [PF00009.29, score=24.3]} {Human: ENSG00000067560, RHOA, ras homolog family member A, [RH, Score=353, Expect=1e-125]; ENSG00000155366, RHOC, ras homolog family member C, [RH, Score=345, Expect=1e-122]} {Mouse: ENSMUSG00000007815, Rhoa, ras homolog family member A, [RH, Score=353, Expect=6e-126]; ENSMUSG00000002233, Rhoc, ras homolog family member C, [RH, Score=345, Expect=8e-123]} {Dmel: FBgn0014020, Rho1, [RH, Score=343, Expect=6e-122]} {Celegans: WBGene00004357, rho-1, Ras-like GTP-binding protein rhoA, [RH, Score=335, Expect=4e-119]} {Smed: dd_Smed_v6_813_0_1, dd_Smed_v6_813_0_1, [RH, Score=338, Expect=2e-120]} {RNA1509_941} {RNA1310_31233.1, RNA1509_941} {RNA1509_941, RNA815_4165.1}
17. MligTC455_17251 399 8.32 Mlig455_044564

Neo: Irradiation

Age: Down-Up-Down

Region-enriched R5: 2.447/0.00470

 GNAI1 0.952 - - 0.952 - - - Mlig455_044564 {REF} {Length: 2782} {TRANSSPLICED} {Pfam: G-protein alpha subunit [PF00503.22, score=411.7]; ADP-ribosylation factor family [PF00025.23, score=60.8]; Gtr1/RagA G protein conserved region [PF04670.14, score=22.2]} {Human: ENSG00000127955, GNAI1, G protein subunit alpha i1, [RH, Score=545, Expect=0.0]; ENSG00000114353, GNAI2, G protein subunit alpha i2, [RH, Score=539, Expect=0.0]; ENSG00000065135, GNAI3, G protein subunit alpha i3, [RH, Score=536, Expect=0.0]} {Mouse: ENSMUSG00000057614, Gnai1, guanine nucleotide binding protein (G protein), alpha inhibiting 1, [RH, Score=545, Expect=0.0]; ENSMUSG00000000001, Gnai3, guanine nucleotide binding protein (G protein), alpha inhibiting 3, [RH, Score=536, Expect=0.0]; ENSMUSG00000032562, Gnai2, guanine nucleotide binding protein (G protein), alpha inhibiting 2, [RH, Score=536, Expect=0.0]} {Dmel: FBgn0001104, Galphai, G protein alpha i subunit, [RH, Score=513, Expect=0.0]} {Celegans: WBGene00001678, gpa-16, Guanine nucleotide-binding protein alpha-16 subunit, [RH, Score=460, Expect=5e-163]} {Smed: dd_Smed_v6_5082_0_2, dd_Smed_v6_5082_0_2, [RH, Score=440, Expect=2e-155]} {RNA1509_5180} {RNA1310_16162} {RNA815_5988}
18. MligTC455_40572 206 4.28 Mlig455_055867

Neo: -

Age: Up-Down-Up

Region-enriched R3: 3.069/0.00971
Region-enriched R4: 2.734/0.03821

 SMOX 0.951 - - - 0.951 - - Mlig455_055867 {REF} {Length: 3423} {TRANSSPLICED} {Pfam: Flavin containing amine oxidoreductase [PF01593.26, score=186.6]; NAD(P)-binding Rossmann-like domain [PF13450.8, score=52.5]; Pyridine nucleotide-disulphide oxidoreductase [PF00070.29, score=22.8]; Pyridine nucleotide-disulphide oxidoreductase [PF07992.16, score=21.8]; FAD dependent oxidoreductase [PF01266.26, score=21.0]; FAD binding domain [PF00890.26, score=18.3]} {Human: ENSG00000088826, SMOX, spermine oxidase, [RH, Score=134, Expect=2e-33]} {Mouse: ENSMUSG00000027333, Smox, spermine oxidase, [RH, Score=133, Expect=3e-33]} {Dmel: FBgn0036749, CG7460, [RH, Score=144, Expect=8e-38]} {Celegans: WBGene00016061, hpo-15, [RH, Score=132, Expect=4e-33]} {Smed: dd_Smed_v6_20536_0_1, dd_Smed_v6_20536_0_1, [RH, Score=63.5, Expect=9e-11]} {RNA1509_44166} {RNA1310_14670.1, RNA1509_44166} {RNA1509_44166, RNA815_11013}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA