Data search
Results for MligTC455_53704
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_53704 | 197 | 4.11 | Mlig455_025862 | Neo: - Age: Up-Down-Up Region-enriched R5: 1.567/0.04208 |
GTF2F2 | Mlig455_025862 {REF} {Length: 2441} {TRANSSPLICED} {Pfam: TFIIF, beta subunit HTH domain [PF02270.17, score=79.3]; TFIIF, beta subunit N-terminus [PF17683.3, score=40.4]} {Human: ENSG00000188342, GTF2F2, general transcription factor IIF subunit 2, [RH, Score=176, Expect=3e-53]} {Mouse: ENSMUSG00000067995, Gtf2f2, general transcription factor IIF, polypeptide 2, [RH, Score=175, Expect=7e-53]} {Dmel: FBgn0010421, TfIIFbeta, Transcription factor TFIIFbeta, [RH, Score=164, Expect=3e-48]} {Celegans: WBGene00012694, Y39B6A.36, General transcription factor IIF subunit 2, [RH, Score=129, Expect=2e-35]} {Smed: dd_Smed_v6_2142_0_1, dd_Smed_v6_2142_0_1, [RH, Score=95.1, Expect=1e-22]} {RNA1509_11554} {RNA1310_14522} {RNA815_1242.1} |
Cumulative graph for MligTC455_53704
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -0.542 | 2.683 | 0.94251 | 1.00000 | |
| RegionR2 | 1.785 | 2.683 | 0.04105 | 0.23605 | |
| RegionR3 | 0.804 | 2.683 | 0.25316 | 0.79723 | |
| RegionR4 | 0.707 | 2.683 | 0.39742 | 0.72394 | |
| RegionR5 | 1.567 | 2.683 | 0.00646 | 0.04208 | |
| RegionR6 | 0.61 | 2.683 | 0.40383 | 0.97432 | |
| RegionR7 | 1.44 | 2.683 | 0.09649 | 0.59446 | |
| RegionR8 | -6.37 | 2.683 | 0.01442 | 0.23331 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | 5.037 | 2.683 | 0.01573 | 0.52744 | |
| RegenerationR2 | -1.477 | 2.683 | 0.04918 | 0.36628 | |
| RegenerationR3 | 0.462 | 2.683 | 0.46263 | 0.83943 | |
| RegenerationR4 | 0.098 | 2.683 | 0.86964 | 1.00000 | |
| RegenerationR5 | -0.035 | 2.683 | 0.99321 | 1.00000 | |
| RegenerationR6 | -0.196 | 2.683 | 0.81061 | 0.98311 | |
| RegenerationBL | 2.996 | 2.683 | 0.05152 | 0.26150 | |
| RegenerationTP | 1.936 | 2.683 | 0.37818 | 0.81333 |
Genes with expression patterns similar to MligTC455_53704
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_53704 | 197 | 4.11 | Mlig455_025862 | Neo: - Age: Up-Down-Up Region-enriched R5: 1.567/0.04208 |
GTF2F2 | 4 | 1.000 | 1.000 | 1.000 | - | - | 1.000 | Mlig455_025862 {REF} {Length: 2441} {TRANSSPLICED} {Pfam: TFIIF, beta subunit HTH domain [PF02270.17, score=79.3]; TFIIF, beta subunit N-terminus [PF17683.3, score=40.4]} {Human: ENSG00000188342, GTF2F2, general transcription factor IIF subunit 2, [RH, Score=176, Expect=3e-53]} {Mouse: ENSMUSG00000067995, Gtf2f2, general transcription factor IIF, polypeptide 2, [RH, Score=175, Expect=7e-53]} {Dmel: FBgn0010421, TfIIFbeta, Transcription factor TFIIFbeta, [RH, Score=164, Expect=3e-48]} {Celegans: WBGene00012694, Y39B6A.36, General transcription factor IIF subunit 2, [RH, Score=129, Expect=2e-35]} {Smed: dd_Smed_v6_2142_0_1, dd_Smed_v6_2142_0_1, [RH, Score=95.1, Expect=1e-22]} {RNA1509_11554} {RNA1310_14522} {RNA815_1242.1} |
| 2. | MligTC455_53705 | 458 | 9.55 | Mlig455_025924 | Neo: - Age: - |
GTF2F2 | 1.859 | 0.960 | 0.899 | - | - | - | - | Mlig455_025924 {REF} {Length: 1877} {TRANSSPLICED} {Pfam: TFIIF, beta subunit HTH domain [PF02270.17, score=79.6]; TFIIF, beta subunit N-terminus [PF17683.3, score=39.8]} {Human: ENSG00000188342, GTF2F2, general transcription factor IIF subunit 2, [RH, Score=176, Expect=5e-53]} {Mouse: ENSMUSG00000067995, Gtf2f2, general transcription factor IIF, polypeptide 2, [RH, Score=174, Expect=1e-52]} {Dmel: FBgn0010421, TfIIFbeta, Transcription factor TFIIFbeta, [RH, Score=163, Expect=3e-48]} {Celegans: WBGene00012694, Y39B6A.36, General transcription factor IIF subunit 2, [Score=126, Expect=3e-34]} {Smed: dd_Smed_v6_2142_0_1, dd_Smed_v6_2142_0_1, [RH, Score=93.6, Expect=5e-22]} {RNA1509_11554, RNA1509_45734} {RNA1310_14522, RNA1509_11554, RNA1509_45734} {RNA1509_11554, RNA1509_45734, RNA815_1242.1} |
| 3. | MligTC455_20667 | 992 | 20.67 | Mlig455_031254, Mlig455_031299, Mlig455_031329 | Neo: Neoblast, stringent Age: logFC(26M/2M)=0.264 Region-enriched R5: 1.345/0.00244 |
XPC | 1.691 | - | 0.729 | - | - | - | 0.962 | Mlig455_031254 {REF} {Length: 234} {NoTransDecoderORF} {RNA1509_41875} {RNA1310_5347} Mlig455_031299 {REF} {Length: 5228} {Pfam: Rad4 beta-hairpin domain 3 [PF10405.11, score=85.1]; Rad4 beta-hairpin domain 2 [PF10404.11, score=58.3]; Rad4 beta-hairpin domain 1 [PF10403.11, score=54.1]; Rad4 transglutaminase-like domain [PF03835.17, score=50.1]} {Human: ENSG00000154767, XPC, XPC complex subunit, DNA damage recognition and repair factor, [RH, Score=292, Expect=5e-84]} {Mouse: ENSMUSG00000030094, Xpc, xeroderma pigmentosum, complementation group C, [RH, Score=302, Expect=6e-88]} {Dmel: FBgn0004698, Xpc, Xeroderma pigmentosum, complementation group C, [RH, Score=296, Expect=3e-84]} {Celegans: WBGene00022296, xpc-1, XPC (Xeroderma Pigmentosum group C) DNA repair gene homolog, [RH, Score=231, Expect=1e-62]} {Smed: dd_Smed_v6_5100_0_1, dd_Smed_v6_5100_0_1, [RH, Score=236, Expect=3e-67]} {RNA1509_22240, RNA1509_37174, RNA1509_43141} {RNA1310_2636, RNA1509_22240, RNA1509_37174, RNA1509_43141} {RNA1509_22240, RNA1509_37174, RNA1509_43141, RNA815_7190.1} Mlig455_031329 {REF} {Length: 3756} {TRANSSPLICED} {Pfam: Rad4 beta-hairpin domain 3 [PF10405.11, score=84.0]; Rad4 beta-hairpin domain 2 [PF10404.11, score=58.3]; Rad4 beta-hairpin domain 1 [PF10403.11, score=52.6]; Rad4 transglutaminase-like domain [PF03835.17, score=50.2]} {Human: ENSG00000154767, XPC, XPC complex subunit, DNA damage recognition and repair factor, [RH, Score=283, Expect=5e-81]} {Mouse: ENSMUSG00000030094, Xpc, xeroderma pigmentosum, complementation group C, [RH, Score=301, Expect=9e-88]} {Dmel: FBgn0004698, Xpc, Xeroderma pigmentosum, complementation group C, [RH, Score=296, Expect=2e-84]} {Celegans: WBGene00022296, xpc-1, XPC (Xeroderma Pigmentosum group C) DNA repair gene homolog, [RH, Score=229, Expect=3e-62]} {Smed: dd_Smed_v6_5100_0_1, dd_Smed_v6_5100_0_1, [RH, Score=237, Expect=2e-67]} {RNA1509_38140} {RNA1310_4273.2} {RNA815_7190.1} |
| 4. | MligTC455_34663 | 329 | 6.86 | Mlig455_034487, Mlig455_066241 | Neo: - Age: - |
0.953 | - | - | 0.953 | - | - | - | Mlig455_034487 {REF} {Length: 3872} {TRANSSPLICED} {Pfam: Tudor domain [PF00567.26, score=83.6]} {RNA1509_3601, RNA1509_49803, RNA1509_58689} {RNA1310_3471, RNA1509_3601, RNA1509_49803, RNA1509_58689} {RNA1509_3601, RNA1509_49803, RNA1509_58689, RNA815_1207} Mlig455_066241 {REF} {Length: 3517} {TRANSSPLICED} {Pfam: Tudor domain [PF00567.26, score=41.7]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=39.4]} {RNA1509_49803} {RNA1310_3471} {RNA815_1207} |
|
| 5. | MligTC455_39017 | 222 | 4.63 | Mlig455_033445 | Neo: Int S/G2/M Age: - |
TCEA2 | 0.951 | - | - | - | - | - | 0.951 | Mlig455_033445 {REF} {Length: 1713} {Pfam: Transcription factor S-II (TFIIS), central domain [PF07500.16, score=114.2]; Transcription factor S-II (TFIIS) [PF01096.20, score=70.2]; TFIIS helical bundle-like domain [PF08711.13, score=33.7]} {Human: ENSG00000171703, TCEA2, transcription elongation factor A2, [RH, Score=257, Expect=3e-84]; ENSG00000187735, TCEA1, transcription elongation factor A1, [RH, Score=252, Expect=2e-82]} {Mouse: ENSMUSG00000033813, Tcea1, transcription elongation factor A (SII) 1, [RH, Score=247, Expect=2e-80]; ENSMUSG00000059540, Tcea2, transcription elongation factor A (SII), 2, [RH, Score=244, Expect=2e-79]; ENSMUSG00000001604, Tcea3, transcription elongation factor A (SII), 3, [RH, Score=237, Expect=4e-76]} {Dmel: FBgn0010422, TfIIS, RNA polymerase II elongation factor, [RH, Score=245, Expect=1e-79]} {Celegans: WBGene00012000, T24H10.1, Putative transcription elongation factor S-II, [RH, Score=213, Expect=2e-67]} {Smed: dd_Smed_v6_3176_0_1, dd_Smed_v6_3176_0_1, [RH, Score=251, Expect=5e-82]} {RNA1509_7459} {RNA1310_7696} {RNA815_8604} |
| 6. | MligTC455_39827 | 59 | 1.23 | Mlig455_069154 | Neo: - Age: Down-Down-Up |
SUFU | 0.951 | - | - | 0.951 | - | - | - | Mlig455_069154 {REF} {Length: 2878} {TRANSSPLICED} {Pfam: Suppressor of fused protein (SUFU) [PF05076.15, score=115.3]; Suppressor of Fused Gli/Ci N terminal binding domain [PF12470.10, score=83.7]} {Human: ENSG00000107882, SUFU, SUFU negative regulator of hedgehog signaling, [RH, Score=229, Expect=4e-70]} {Mouse: ENSMUSG00000025231, Sufu, SUFU negative regulator of hedgehog signaling, [RH, Score=209, Expect=2e-62]} {Dmel: FBgn0005355, Su(fu), Suppressor of fused, [RH, Score=187, Expect=1e-54]} {Smed: dd_Smed_v6_10354_0_1, dd_Smed_v6_10354_0_1, [RH, Score=197, Expect=1e-58]} {RNA1509_14191} {RNA1310_26619} {RNA815_22563} |
| 7. | MligTC455_46874 | 710 | 14.79 | Mlig455_027558 | Neo: Neoblast, stringent Age: - Region-enriched R5: 1.389/0.00017 |
IQGAP2 | 0.95 | - | - | - | - | - | 0.950 | Mlig455_027558 {REF} {Length: 6504} {TRANSSPLICED} {Pfam: GTPase-activator protein for Ras-like GTPase [PF00616.21, score=75.4]; RasGAP C-terminus [PF03836.17, score=60.5]; Calponin homology (CH) domain [PF00307.33, score=56.6]; IQ calmodulin-binding motif [PF00612.29, score=29.7]} {Human: ENSG00000145703, IQGAP2, IQ motif containing GTPase activating protein 2, [RH, Score=665, Expect=0.0]} {Mouse: ENSMUSG00000030536, Iqgap1, IQ motif containing GTPase activating protein 1, [RH, Score=489, Expect=3e-145]; ENSMUSG00000021676, Iqgap2, IQ motif containing GTPase activating protein 2, [RH, Score=469, Expect=2e-138]} {Dmel: FBgn0002789, Mp20, Muscle protein 20, [Score=63.9, Expect=6e-11]} {Celegans: WBGene00003980, pes-7, Patterned Expression Site, [RH, Score=160, Expect=4e-39]} {Smed: dd_Smed_v6_103369_0_1, dd_Smed_v6_103369_0_1, [RH, Score=56.6, Expect=7e-10]} {RNA1509_11024, RNA1509_7643} {RNA1310_1089.1, RNA1509_11024, RNA1509_7643} {RNA1509_11024, RNA1509_7643, RNA815_3828} |
Berezikov Lab - 2020-2021 © ERIBA