TomoSeq data search

Data search

Results for MligTC455_54056

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_54056

1132

23.59

Mlig455_007482

Neo: -

Age: -

EPB41L3

Mlig455_007482 {REF} {Length: 5099} {TRANSSPLICED} {Pfam: FERM C-terminal PH-like domain [PF09380.12, score=68.2]; FERM central domain [PF00373.20, score=57.6]; FERM N-terminal domain [PF09379.12, score=57.3]; FERM adjacent (FA) [PF08736.13, score=24.3]} {Human: ENSG00000082397, EPB41L3, erythrocyte membrane protein band 4.1 like 3, [RH, Score=345, Expect=3e-104]; ENSG00000079819, EPB41L2, erythrocyte membrane protein band 4.1 like 2, [RH, Score=342, Expect=2e-102]; ENSG00000088367, EPB41L1, erythrocyte membrane protein band 4.1 like 1, [RH, Score=332, Expect=3e-99]} {Mouse: ENSMUSG00000024044, Epb41l3, erythrocyte membrane protein band 4.1 like 3, [RH, Score=348, Expect=2e-105]; ENSMUSG00000019978, Epb41l2, erythrocyte membrane protein band 4.1 like 2, [RH, Score=336, Expect=1e-100]; ENSMUSG00000027624, Epb41l1, erythrocyte membrane protein band 4.1 like 1, [RH, Score=335, Expect=2e-100]} {Dmel: FBgn0010434, cora, coracle, [RH, Score=329, Expect=5e-95]} {Celegans: WBGene00001490, frm-3, FERM domain (Protein4.1-ezrin-radixin-moesin) family, [Score=219, Expect=5e-59]} {Smed: dd_Smed_v6_2825_0_1, dd_Smed_v6_2825_0_1, [RH, Score=468, Expect=2e-151]} {RNA1509_20464, RNA1509_20990, RNA1509_22281, RNA1509_24778, RNA1509_2586} {RNA1310_8874.2, RNA1509_20464, RNA1509_20990, RNA1509_22281, RNA1509_24778} {RNA1509_20464, RNA1509_20990, RNA1509_22281, RNA1509_24778, RNA815_4056}

Cumulative graph for MligTC455_54056

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.081	4.712	0.93139	1.00000
RegionR2	-0.504	4.712	0.18262	0.53374
RegionR3	0.098	4.712	0.74818	1.00000
RegionR4	0.664	4.712	0.09152	0.28973
RegionR5	-0.16	4.712	0.60340	0.96080
RegionR6	-0.261	4.712	0.42510	0.99154
RegionR7	0.085	4.712	0.83034	1.00000
RegionR8	-0.003	4.712	0.99418	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	0.316	4.712	0.78134	1.00000
RegenerationR2	0.431	4.712	0.17503	0.61566
RegenerationR3	-0.429	4.712	0.23087	0.66548
RegenerationR4	0.067	4.712	0.86029	1.00000
RegenerationR5	-0.009	4.712	0.97991	1.00000
RegenerationR6	0.327	4.712	0.37799	0.71972
RegenerationBL	0.632	4.712	0.09561	0.36301
RegenerationTP	0.243	4.712	0.57568	0.94717

Genes with expression patterns similar to MligTC455_54056

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_54056	1132	23.59	Mlig455_007482	Neo: - Age: -	EPB41L3	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_007482 {REF} {Length: 5099} {TRANSSPLICED} {Pfam: FERM C-terminal PH-like domain [PF09380.12, score=68.2]; FERM central domain [PF00373.20, score=57.6]; FERM N-terminal domain [PF09379.12, score=57.3]; FERM adjacent (FA) [PF08736.13, score=24.3]} {Human: ENSG00000082397, EPB41L3, erythrocyte membrane protein band 4.1 like 3, [RH, Score=345, Expect=3e-104]; ENSG00000079819, EPB41L2, erythrocyte membrane protein band 4.1 like 2, [RH, Score=342, Expect=2e-102]; ENSG00000088367, EPB41L1, erythrocyte membrane protein band 4.1 like 1, [RH, Score=332, Expect=3e-99]} {Mouse: ENSMUSG00000024044, Epb41l3, erythrocyte membrane protein band 4.1 like 3, [RH, Score=348, Expect=2e-105]; ENSMUSG00000019978, Epb41l2, erythrocyte membrane protein band 4.1 like 2, [RH, Score=336, Expect=1e-100]; ENSMUSG00000027624, Epb41l1, erythrocyte membrane protein band 4.1 like 1, [RH, Score=335, Expect=2e-100]} {Dmel: FBgn0010434, cora, coracle, [RH, Score=329, Expect=5e-95]} {Celegans: WBGene00001490, frm-3, FERM domain (Protein4.1-ezrin-radixin-moesin) family, [Score=219, Expect=5e-59]} {Smed: dd_Smed_v6_2825_0_1, dd_Smed_v6_2825_0_1, [RH, Score=468, Expect=2e-151]} {RNA1509_20464, RNA1509_20990, RNA1509_22281, RNA1509_24778, RNA1509_2586} {RNA1310_8874.2, RNA1509_20464, RNA1509_20990, RNA1509_22281, RNA1509_24778} {RNA1509_20464, RNA1509_20990, RNA1509_22281, RNA1509_24778, RNA815_4056}
2.	MligTC455_47026	940	19.58	Mlig455_029999	Neo: - Age: -	B4GALT2	1.723	-	-	0.764	0.959	-	-	Mlig455_029999 {REF} {Length: 2258} {TRANSSPLICED} {Pfam: N-terminal region of glycosyl transferase group 7 [PF13733.8, score=155.4]; N-terminal domain of galactosyltransferase [PF02709.16, score=87.3]} {Human: ENSG00000117411, B4GALT2, beta-1,4-galactosyltransferase 2, [RH, Score=252, Expect=2e-80]; ENSG00000086062, B4GALT1, beta-1,4-galactosyltransferase 1, [RH, Score=249, Expect=1e-78]; ENSG00000121578, B4GALT4, beta-1,4-galactosyltransferase 4, [RH, Score=244, Expect=8e-78]} {Mouse: ENSMUSG00000028541, B4galt2, UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2, [RH, Score=252, Expect=1e-80]; ENSMUSG00000028413, B4galt1, UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1, [RH, Score=249, Expect=7e-79]; ENSMUSG00000022793, B4galt4, UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4, [RH, Score=248, Expect=2e-79]} {Dmel: FBgn0027538, beta4GalNAcTA, [Score=227, Expect=2e-70]} {Celegans: WBGene00000269, bre-4, Beta-1,4-N-acetylgalactosaminyltransferase bre-4, [RH, Score=270, Expect=2e-87]} {Smed: dd_Smed_v6_9651_0_1, dd_Smed_v6_9651_0_1, [RH, Score=265, Expect=5e-85]} {RNA1509_23689} {RNA1310_17950, RNA1509_23689} {RNA1509_23689, RNA815_8240}
3.	MligTC455_53046	4525	94.28	Mlig455_036491, Mlig455_037540	Neo: - Age: Down-Up-Down	DYNLL1	0.977	-	-	-	0.977	-	-	Mlig455_036491 {REF} {Length: 1061} {Pfam: Dynein light chain type 1 [PF01221.20, score=67.9]; EF hand [PF00036.34, score=47.4]; EF-hand domain pair [PF13499.8, score=44.1]; EF-hand domain [PF13405.8, score=36.6]; EF hand [PF13202.8, score=35.1]; EF-hand domain pair [PF13833.8, score=29.2]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=18.7]} {Human: ENSG00000088986, DYNLL1, dynein light chain LC8-type 1, [Score=51.2, Expect=2e-08]; ENSG00000264364, DYNLL2, dynein light chain LC8-type 2, [Score=49.3, Expect=1e-07]} {Mouse: ENSMUSG00000009013, Dynll1, dynein light chain LC8-type 1, [Score=51.2, Expect=2e-08]; ENSMUSG00000020483, Dynll2, dynein light chain LC8-type 2, [Score=49.3, Expect=8e-08]} {Dmel: FBgn0011760, ctp, cut up, [Score=49.3, Expect=5e-08]} {Celegans: WBGene00043067, dlc-5, Dynein Light Chain, [Score=49.7, Expect=1e-07]} {Smed: dd_Smed_v6_1881_0_1, dd_Smed_v6_1881_0_1, [RH, Score=134, Expect=8e-40]} {RNA1509_3612} {RNA1310_33488} {RNA815_4208} Mlig455_037540 {REF} {Length: 1060} {Pfam: Dynein light chain type 1 [PF01221.20, score=67.9]; EF hand [PF00036.34, score=47.4]; EF-hand domain pair [PF13499.8, score=44.1]; EF-hand domain [PF13405.8, score=36.6]; EF hand [PF13202.8, score=35.1]; EF-hand domain pair [PF13833.8, score=29.2]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=18.7]} {Human: ENSG00000088986, DYNLL1, dynein light chain LC8-type 1, [Score=51.2, Expect=2e-08]; ENSG00000264364, DYNLL2, dynein light chain LC8-type 2, [Score=49.3, Expect=1e-07]} {Mouse: ENSMUSG00000009013, Dynll1, dynein light chain LC8-type 1, [Score=51.2, Expect=2e-08]; ENSMUSG00000020483, Dynll2, dynein light chain LC8-type 2, [Score=49.3, Expect=8e-08]} {Dmel: FBgn0011760, ctp, cut up, [Score=49.3, Expect=5e-08]} {Celegans: WBGene00043067, dlc-5, Dynein Light Chain, [Score=49.7, Expect=1e-07]} {Smed: dd_Smed_v6_1881_0_1, dd_Smed_v6_1881_0_1, [RH, Score=134, Expect=8e-40]} {RNA1509_3612} {RNA1310_33488, RNA1509_3612} {RNA1509_3612, RNA815_4208}
4.	MligTC455_31990	61	1.28	Mlig455_070961	Neo: - Age: Down-Up-Down		0.97	-	-	-	-	0.970	-	Mlig455_070961 {REF} {Length: 873} {NoTransDecoderORF} {RNA1509_25657} {RNA1310_41739} {RNA815_26110}
5.	MligTC455_35002	390	8.12	Mlig455_070372	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.711	SVEP1	0.962	-	-	-	-	-	0.962	Mlig455_070372 {REF} {Length: 1042} {Pfam: EGF-like domain [PF00008.29, score=33.8]; EGF-like domain [PF07974.15, score=21.9]} {Human: ENSG00000165124, SVEP1, sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1, [Score=51.6, Expect=3e-07]; ENSG00000148400, NOTCH1, notch 1, [Score=51.2, Expect=4e-07]} {Mouse: ENSMUSG00000047793, Sned1, sushi, nidogen and EGF-like domains 1, [Score=58.9, Expect=5e-10]} {Dmel: FBgn0004647, N, Notch, [Score=50.1, Expect=4e-07]} {RNA1509_29817} {RNA1310_28236} {RNA815_11876.1}
6.	MligTC455_49615	1273	26.51	Mlig455_029719, Mlig455_034865	Neo: - Age: logFC(26M/2M)=0.276 Regeneration-upregulated BL: 3.129 Regeneration-enriched BL: 3.129	SHOC2	0.961	-	-	-	-	0.961	-	Mlig455_029719 {REF} {Length: 3635} {Pfam: Leucine rich repeat [PF13855.8, score=213.0]; Leucine Rich repeats (2 copies) [PF12799.9, score=106.0]; Leucine Rich Repeat [PF00560.35, score=35.5]; Leucine-rich repeat [PF14580.8, score=32.1]; BspA type Leucine rich repeat region (6 copies) [PF13306.8, score=22.9]} {Human: ENSG00000108061, SHOC2, SHOC2, leucine rich repeat scaffold protein, [Score=380, Expect=6e-124]} {Mouse: ENSMUSG00000024976, Shoc2, Shoc2, leucine rich repeat scaffold protein, [Score=379, Expect=2e-123]} {Dmel: FBgn0038504, Sur-8, [Score=403, Expect=3e-132]} {Celegans: WBGene00004929, soc-2, Leucine-rich repeat protein soc-2, [Score=359, Expect=3e-116]} {Smed: dd_Smed_v6_1909_0_1, dd_Smed_v6_1909_0_1, [Score=351, Expect=5e-113]} {RNA1509_12617, RNA1509_35671} {RNA1310_9871.1, RNA1509_12617, RNA1509_35671} {RNA1509_12617, RNA1509_35671, RNA815_10195} Mlig455_034865 {REF} {Length: 3049} {Pfam: Leucine rich repeat [PF13855.8, score=181.1]; Leucine Rich repeats (2 copies) [PF12799.9, score=93.1]; Leucine-rich repeat [PF14580.8, score=36.5]; Leucine Rich Repeat [PF00560.35, score=32.7]; BspA type Leucine rich repeat region (6 copies) [PF13306.8, score=25.7]} {Human: ENSG00000108061, SHOC2, SHOC2, leucine rich repeat scaffold protein, [Score=270, Expect=4e-85]} {Mouse: ENSMUSG00000024976, Shoc2, Shoc2, leucine rich repeat scaffold protein, [Score=270, Expect=3e-85]} {Dmel: FBgn0038504, Sur-8, [Score=286, Expect=7e-91]} {Celegans: WBGene00004929, soc-2, Leucine-rich repeat protein soc-2, [Score=249, Expect=1e-77]} {Smed: dd_Smed_v6_6416_0_1, dd_Smed_v6_6416_0_1, [Score=260, Expect=1e-81]} {RNA1509_12617} {RNA1310_9871.2} {RNA815_10195}
7.	MligTC455_27301	1291	26.89	Mlig455_031019	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.229		0.96	-	-	-	0.960	-	-	Mlig455_031019 {REF} {Length: 3754} {Smed: dd_Smed_v6_5420_0_1, dd_Smed_v6_5420_0_1, [RH, Score=177, Expect=9e-56]} {RNA1509_31486} {RNA1310_20686, RNA1509_31486} {RNA1509_31486, RNA815_9356.1}
8.	MligTC455_14475	4578	95.38	Mlig455_040090	Neo: - Age: -		0.957	-	-	-	-	0.957	-	Mlig455_040090 {REF} {Length: 1993} {TRANSSPLICED} {Pfam: Tetraspanin family [PF00335.22, score=88.6]} {Mouse: ENSMUSG00000025511, Tspan4, tetraspanin 4, [Score=46.6, Expect=1e-05]} {Dmel: FBgn0036769, Tsp74F, Tetraspanin 74F, [RH, Score=92.4, Expect=9e-22]} {Smed: dd_Smed_v6_1808_0_1, dd_Smed_v6_1808_0_1, [RH, Score=187, Expect=3e-57]} {RNA1509_12533, RNA1509_1365} {RNA1310_13559.1, RNA1509_12533, RNA1509_1365} {RNA1509_12533, RNA1509_1365, RNA815_5097.1}
9.	MligTC455_46504	1321	27.52	Mlig455_022424, Mlig455_031778	Neo: - Age: -		0.957	-	-	-	-	0.957	-	Mlig455_022424 {REF} {Length: 3061} {TRANSSPLICED} {RNA1509_14897} {RNA1310_18938} {RNA815_5554.1} Mlig455_031778 {REF} {Length: 3058} {TRANSSPLICED} {RNA1509_12077, RNA1509_14897, RNA1509_40842} {RNA1310_18938, RNA1509_12077, RNA1509_14897, RNA1509_40842} {RNA1509_12077, RNA1509_14897, RNA1509_40842, RNA815_5554.1}
10.	MligTC455_48665	436	9.08	Mlig455_026552, Mlig455_026641	Neo: - Age: Down-Up-Down	C12orf65, TMEM50B	0.956	-	-	-	-	0.956	-	Mlig455_026552 {REF} {Length: 1424} {TRANSSPLICED} {Pfam: RF-1 domain [PF00472.22, score=79.2]} {Human: ENSG00000130921, C12orf65, chromosome 12 open reading frame 65, [RH, Score=98.2, Expect=6e-26]} {Mouse: ENSMUSG00000047635, 2810006K23Rik, RIKEN cDNA 2810006K23 gene, [RH, Score=99.8, Expect=3e-26]} {Dmel: FBgn0050100, CG30100, [RH, Score=88.6, Expect=3e-22]} {Celegans: WBGene00011941, T23B5.4, [RH, Score=74.3, Expect=3e-17]} {Smed: dd_Smed_v6_3623_0_1, dd_Smed_v6_3623_0_1, [RH, Score=107, Expect=9e-30]} {RNA1509_33680} {RNA1310_23854} {RNA815_23440} Mlig455_026641 {REF} {Length: 2460} {TRANSSPLICED} {Pfam: Uncharacterised protein family (UPF0220) [PF05255.13, score=108.3]; RF-1 domain [PF00472.22, score=77.5]} {Human: ENSG00000142188, TMEM50B, transmembrane protein 50B, [RH, Score=158, Expect=1e-47]; ENSG00000263160, TMEM50B, transmembrane protein 50B, [RH, Score=158, Expect=1e-47]} {Mouse: ENSMUSG00000022964, Tmem50b, transmembrane protein 50B, [Score=161, Expect=8e-49]} {Dmel: FBgn0050100, CG30100, [RH, Score=87.8, Expect=6e-21]} {Celegans: WBGene00022280, Y74C10AL.2, [Score=102, Expect=1e-26]} {Smed: dd_Smed_v6_4466_0_1, dd_Smed_v6_4466_0_1, [Score=148, Expect=3e-44]} {RNA1509_33680} {RNA1310_23854} {RNA815_23440}
11.	MligTC455_47995	156	3.26	Mlig455_009029	Neo: - Age: -		0.954	-	-	-	0.954	-	-	Mlig455_009029 {REF} {Length: 1913} {RNA1310_15751} {RNA815_12389.1}
12.	MligTC455_19861	1091	22.73	Mlig455_029294	Neo: - Age: logFC(26M/2M)=0.234	VWA5A	0.953	-	-	-	-	-	0.953	Mlig455_029294 {REF} {Length: 3677} {Pfam: von Willebrand factor type A domain [PF13768.8, score=85.7]; Vault protein inter-alpha-trypsin domain [PF08487.12, score=71.5]; von Willebrand factor type A domain [PF00092.30, score=42.4]; Vault protein inter-alpha-trypsin domain [PF13757.8, score=41.5]; von Willebrand factor type A domain [PF13519.8, score=40.3]} {Human: ENSG00000110002, VWA5A, von Willebrand factor A domain containing 5A, [Score=198, Expect=2e-52]} {Mouse: ENSMUSG00000023186, Vwa5a, von Willebrand factor A domain containing 5A, [Score=199, Expect=7e-53]} {Smed: dd_Smed_v6_1027_0_1, dd_Smed_v6_1027_0_1, [Score=219, Expect=9e-60]} {RNA1509_11390} {RNA1310_4096.1, RNA1509_11390} {RNA1509_11390, RNA815_1250.1}

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