TomoSeq data search

Data search

Results for MligTC455_49615

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_49615

1273

26.51

Mlig455_029719, Mlig455_034865

Neo: -

Age: logFC(26M/2M)=0.276

Regeneration-upregulated BL: 3.129

Regeneration-enriched BL: 3.129

SHOC2

Mlig455_029719 {REF} {Length: 3635} {Pfam: Leucine rich repeat [PF13855.8, score=213.0]; Leucine Rich repeats (2 copies) [PF12799.9, score=106.0]; Leucine Rich Repeat [PF00560.35, score=35.5]; Leucine-rich repeat [PF14580.8, score=32.1]; BspA type Leucine rich repeat region (6 copies) [PF13306.8, score=22.9]} {Human: ENSG00000108061, SHOC2, SHOC2, leucine rich repeat scaffold protein, [Score=380, Expect=6e-124]} {Mouse: ENSMUSG00000024976, Shoc2, Shoc2, leucine rich repeat scaffold protein, [Score=379, Expect=2e-123]} {Dmel: FBgn0038504, Sur-8, [Score=403, Expect=3e-132]} {Celegans: WBGene00004929, soc-2, Leucine-rich repeat protein soc-2, [Score=359, Expect=3e-116]} {Smed: dd_Smed_v6_1909_0_1, dd_Smed_v6_1909_0_1, [Score=351, Expect=5e-113]} {RNA1509_12617, RNA1509_35671} {RNA1310_9871.1, RNA1509_12617, RNA1509_35671} {RNA1509_12617, RNA1509_35671, RNA815_10195}

Mlig455_034865 {REF} {Length: 3049} {Pfam: Leucine rich repeat [PF13855.8, score=181.1]; Leucine Rich repeats (2 copies) [PF12799.9, score=93.1]; Leucine-rich repeat [PF14580.8, score=36.5]; Leucine Rich Repeat [PF00560.35, score=32.7]; BspA type Leucine rich repeat region (6 copies) [PF13306.8, score=25.7]} {Human: ENSG00000108061, SHOC2, SHOC2, leucine rich repeat scaffold protein, [Score=270, Expect=4e-85]} {Mouse: ENSMUSG00000024976, Shoc2, Shoc2, leucine rich repeat scaffold protein, [Score=270, Expect=3e-85]} {Dmel: FBgn0038504, Sur-8, [Score=286, Expect=7e-91]} {Celegans: WBGene00004929, soc-2, Leucine-rich repeat protein soc-2, [Score=249, Expect=1e-77]} {Smed: dd_Smed_v6_6416_0_1, dd_Smed_v6_6416_0_1, [Score=260, Expect=1e-81]} {RNA1509_12617} {RNA1310_9871.2} {RNA815_10195}

Cumulative graph for MligTC455_49615

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.721	4.915	0.61544	1.00000
RegionR2	0.283	4.915	0.70779	1.00000
RegionR3	0.605	4.915	0.26702	0.81132
RegionR4	0.34	4.915	0.63721	0.94399
RegionR5	-0.784	4.915	0.16931	0.43745
RegionR6	0.145	4.915	0.80441	1.00000
RegionR7	-2.034	4.915	0.02201	0.27569
RegionR8	0.723	4.915	0.33455	0.96756

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	2.942	4.915	0.05210	0.70489
RegenerationR2	0.267	4.915	0.68074	0.94917
RegenerationR3	0.876	4.915	0.22274	0.65831
RegenerationR4	1.601	4.915	0.03575	0.30569
RegenerationR5	2.529	4.915	0.00038	0.03139
RegenerationR6	2.219	4.915	0.00115	0.03754
RegenerationBL	3.129	4.915	0.00000	0.00008	Specific for BL: 3.129
RegenerationTP	1.335	4.915	0.12216	0.53107

Genes with expression patterns similar to MligTC455_49615

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_49615	1273	26.51	Mlig455_029719, Mlig455_034865	Neo: - Age: logFC(26M/2M)=0.276 Regeneration-upregulated BL: 3.129 Regeneration-enriched BL: 3.129	SHOC2	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_029719 {REF} {Length: 3635} {Pfam: Leucine rich repeat [PF13855.8, score=213.0]; Leucine Rich repeats (2 copies) [PF12799.9, score=106.0]; Leucine Rich Repeat [PF00560.35, score=35.5]; Leucine-rich repeat [PF14580.8, score=32.1]; BspA type Leucine rich repeat region (6 copies) [PF13306.8, score=22.9]} {Human: ENSG00000108061, SHOC2, SHOC2, leucine rich repeat scaffold protein, [Score=380, Expect=6e-124]} {Mouse: ENSMUSG00000024976, Shoc2, Shoc2, leucine rich repeat scaffold protein, [Score=379, Expect=2e-123]} {Dmel: FBgn0038504, Sur-8, [Score=403, Expect=3e-132]} {Celegans: WBGene00004929, soc-2, Leucine-rich repeat protein soc-2, [Score=359, Expect=3e-116]} {Smed: dd_Smed_v6_1909_0_1, dd_Smed_v6_1909_0_1, [Score=351, Expect=5e-113]} {RNA1509_12617, RNA1509_35671} {RNA1310_9871.1, RNA1509_12617, RNA1509_35671} {RNA1509_12617, RNA1509_35671, RNA815_10195} Mlig455_034865 {REF} {Length: 3049} {Pfam: Leucine rich repeat [PF13855.8, score=181.1]; Leucine Rich repeats (2 copies) [PF12799.9, score=93.1]; Leucine-rich repeat [PF14580.8, score=36.5]; Leucine Rich Repeat [PF00560.35, score=32.7]; BspA type Leucine rich repeat region (6 copies) [PF13306.8, score=25.7]} {Human: ENSG00000108061, SHOC2, SHOC2, leucine rich repeat scaffold protein, [Score=270, Expect=4e-85]} {Mouse: ENSMUSG00000024976, Shoc2, Shoc2, leucine rich repeat scaffold protein, [Score=270, Expect=3e-85]} {Dmel: FBgn0038504, Sur-8, [Score=286, Expect=7e-91]} {Celegans: WBGene00004929, soc-2, Leucine-rich repeat protein soc-2, [Score=249, Expect=1e-77]} {Smed: dd_Smed_v6_6416_0_1, dd_Smed_v6_6416_0_1, [Score=260, Expect=1e-81]} {RNA1509_12617} {RNA1310_9871.2} {RNA815_10195}
2.	MligTC455_53376	774	16.13	Mlig455_026045	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.857 Region-enriched R4: 4.177/0.03207		0.964	-	-	-	-	0.964	-	Mlig455_026045 {REF} {Length: 757} {RNA1509_32272} {RNA1310_31766} {RNA815_19966}
3.	MligTC455_23199	19836	413.25	Mlig455_056495	Neo: Int S/G2/M Age: Down-Up-Up, logFC(26M/2M)=0.350	RPS9	0.961	-	-	-	-	0.961	-	Mlig455_056495 {REF} {Length: 734} {TRANSSPLICED} {Pfam: S4 domain [PF01479.27, score=33.9]; Ribosomal protein S4/S9 N-terminal domain [PF00163.21, score=28.0]} {Human: ENSG00000170889, RPS9, ribosomal protein S9, [RH, Score=303, Expect=7e-106]; ENSG00000274950, RPS9, ribosomal protein S9, [RH, Score=303, Expect=7e-106]; ENSG00000277079, AC012314.29, ribosomal protein S9, [RH, Score=303, Expect=7e-106]; ENSG00000274646, RPS9, ribosomal protein S9, [RH, Score=303, Expect=7e-106]; ENSG00000278270, RPS9, ribosomal protein S9, [RH, Score=303, Expect=7e-106]; ENSG00000275323, AC012314.16, ribosomal protein S9, [RH, Score=303, Expect=7e-106]; ENSG00000274005, AC012314.4, ribosomal protein S9, [RH, Score=303, Expect=7e-106]; ENSG00000274626, AC012314.9, ribosomal protein S9, [RH, Score=303, Expect=7e-106]; ENSG00000278081, AC012314.37, ribosomal protein S9, [RH, Score=303, Expect=7e-106]; ENSG00000277359, AC012314.31, ribosomal protein S9, [RH, Score=303, Expect=7e-106]} {Mouse: ENSMUSG00000006333, Rps9, ribosomal protein S9, [RH, Score=303, Expect=5e-106]} {Dmel: FBgn0010408, RpS9, Ribosomal protein S9, [RH, Score=306, Expect=1e-107]} {Celegans: WBGene00004478, rps-9, 40S ribosomal protein S9, [RH, Score=306, Expect=1e-107]} {Smed: dd_Smed_v6_92_0_1, dd_Smed_v6_92_0_1, [RH, Score=320, Expect=2e-113]} {RNA1509_1161, RNA1509_1343, RNA1509_508, RNA1509_851} {RNA1310_48528, RNA1509_1161, RNA1509_1343, RNA1509_508, RNA1509_851} {RNA1509_1161, RNA1509_1343, RNA1509_508, RNA1509_851, RNA815_19464}
4.	MligTC455_54056	1132	23.59	Mlig455_007482	Neo: - Age: -	EPB41L3	0.961	-	-	-	-	0.961	-	Mlig455_007482 {REF} {Length: 5099} {TRANSSPLICED} {Pfam: FERM C-terminal PH-like domain [PF09380.12, score=68.2]; FERM central domain [PF00373.20, score=57.6]; FERM N-terminal domain [PF09379.12, score=57.3]; FERM adjacent (FA) [PF08736.13, score=24.3]} {Human: ENSG00000082397, EPB41L3, erythrocyte membrane protein band 4.1 like 3, [RH, Score=345, Expect=3e-104]; ENSG00000079819, EPB41L2, erythrocyte membrane protein band 4.1 like 2, [RH, Score=342, Expect=2e-102]; ENSG00000088367, EPB41L1, erythrocyte membrane protein band 4.1 like 1, [RH, Score=332, Expect=3e-99]} {Mouse: ENSMUSG00000024044, Epb41l3, erythrocyte membrane protein band 4.1 like 3, [RH, Score=348, Expect=2e-105]; ENSMUSG00000019978, Epb41l2, erythrocyte membrane protein band 4.1 like 2, [RH, Score=336, Expect=1e-100]; ENSMUSG00000027624, Epb41l1, erythrocyte membrane protein band 4.1 like 1, [RH, Score=335, Expect=2e-100]} {Dmel: FBgn0010434, cora, coracle, [RH, Score=329, Expect=5e-95]} {Celegans: WBGene00001490, frm-3, FERM domain (Protein4.1-ezrin-radixin-moesin) family, [Score=219, Expect=5e-59]} {Smed: dd_Smed_v6_2825_0_1, dd_Smed_v6_2825_0_1, [RH, Score=468, Expect=2e-151]} {RNA1509_20464, RNA1509_20990, RNA1509_22281, RNA1509_24778, RNA1509_2586} {RNA1310_8874.2, RNA1509_20464, RNA1509_20990, RNA1509_22281, RNA1509_24778} {RNA1509_20464, RNA1509_20990, RNA1509_22281, RNA1509_24778, RNA815_4056}
5.	MligTC455_33047	151	3.15	Mlig455_034450, Mlig455_066216	Neo: - Age: Down-Up-Down		0.96	-	-	-	-	0.960	-	Mlig455_034450 {REF} {Length: 1923} {Pfam: RING-type zinc-finger [PF13445.8, score=21.9]} {RNA1509_56470} {RNA1310_29135} {RNA815_50865} Mlig455_066216 {REF} {Length: 1714} {Pfam: RING-type zinc-finger [PF13445.8, score=22.3]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=19.6]} {RNA1509_56470} {RNA1310_29135} {RNA815_50865}
6.	MligTC455_42009	650	13.54	Mlig455_020735, Mlig455_020807	Neo: - Age: -	WDR24	0.96	-	-	-	-	0.960	-	Mlig455_020735 {REF} {Length: 4356} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=42.9]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=23.8]; Zinc-ribbon, C4HC2 type [PF17120.7, score=23.4]} {Human: ENSG00000127580, WDR24, WD repeat domain 24, [RH, Score=190, Expect=1e-49]} {Mouse: ENSMUSG00000025737, Wdr24, WD repeat domain 24, [RH, Score=191, Expect=4e-50]} {Dmel: FBgn0027518, Wdr24, WD repeat domain 24, [RH, Score=182, Expect=2e-47]} {Celegans: WBGene00021316, Y32H12A.8, [RH, Score=131, Expect=1e-30]} {Smed: dd_Smed_v6_6280_0_1, dd_Smed_v6_6280_0_1, [RH, Score=144, Expect=4e-35]} {RNA1509_12662} {RNA1310_2373.1, RNA1509_12662} {RNA1509_12662, RNA815_16648} Mlig455_020807 {REF} {Length: 4433} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=42.9]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=23.8]; Zinc-ribbon, C4HC2 type [PF17120.7, score=23.4]} {Human: ENSG00000127580, WDR24, WD repeat domain 24, [RH, Score=191, Expect=6e-50]} {Mouse: ENSMUSG00000025737, Wdr24, WD repeat domain 24, [RH, Score=191, Expect=3e-50]} {Dmel: FBgn0027518, Wdr24, WD repeat domain 24, [RH, Score=181, Expect=6e-47]} {Celegans: WBGene00021316, Y32H12A.8, [RH, Score=131, Expect=1e-30]} {Smed: dd_Smed_v6_6280_0_1, dd_Smed_v6_6280_0_1, [RH, Score=145, Expect=2e-35]} {RNA1509_12662, RNA1509_30976, RNA1509_45998, RNA1509_50057} {RNA1310_2373.1, RNA1509_30976, RNA1509_45998, RNA1509_50057} {RNA1509_30976, RNA1509_45998, RNA1509_50057, RNA815_16648}
7.	MligTC455_27660	736	15.33	Mlig455_064735	Neo: - Age: -	COQ3	0.958	-	-	-	-	0.958	-	Mlig455_064735 {REF} {Length: 1717} {TRANSSPLICED} {Pfam: Methyltransferase domain [PF13489.8, score=79.3]; Methyltransferase domain [PF08241.14, score=70.0]; Methyltransferase domain [PF13649.8, score=57.4]; Methyltransferase domain [PF08242.14, score=52.4]; Methyltransferase domain [PF13847.8, score=49.8]; Mycolic acid cyclopropane synthetase [PF02353.22, score=28.9]; Methyltransferase domain [PF13679.8, score=20.8]; Methyltransferase small domain [PF05175.16, score=19.4]; Nodulation protein S (NodS) [PF05401.13, score=19.3]} {Human: ENSG00000132423, COQ3, coenzyme Q3, methyltransferase, [RH, Score=204, Expect=2e-63]} {Mouse: ENSMUSG00000028247, Coq3, coenzyme Q3 methyltransferase, [RH, Score=202, Expect=9e-63]} {Dmel: FBgn0032922, CG9249, [RH, Score=148, Expect=8e-43]} {Celegans: WBGene00000763, coq-3, Ubiquinone biosynthesis O-methyltransferase, mitochondrial, [RH, Score=167, Expect=9e-51]} {Smed: dd_Smed_v6_9618_0_1, dd_Smed_v6_9618_0_1, [RH, Score=172, Expect=2e-52]} {RNA1509_44835} {RNA1310_20921.1, RNA1509_44835} {RNA1509_44835, RNA815_12330}
8.	MligTC455_54298	484	10.08	Mlig455_036433, Mlig455_054604	Neo: - Age: Down-Down-Up, logFC(26M/2M)=0.319		0.958	-	-	-	0.958	-	-	Mlig455_036433 {REF} {Length: 2616} {Pfam: Leucine rich repeat [PF13855.8, score=44.6]; Leucine Rich repeats (2 copies) [PF12799.9, score=21.7]} {Mouse: ENSMUSG00000042793, Lgr6, leucine-rich repeat-containing G protein-coupled receptor 6, [Score=50.1, Expect=7e-06]} {RNA1509_11297} {RNA1310_8241} {RNA815_10557} Mlig455_054604 {REF} {Length: 2612} {Pfam: Leucine rich repeat [PF13855.8, score=45.7]; Leucine Rich repeats (2 copies) [PF12799.9, score=22.2]} {Mouse: ENSMUSG00000042793, Lgr6, leucine-rich repeat-containing G protein-coupled receptor 6, [Score=51.2, Expect=3e-06]} {Dmel: FBgn0015400, kek2, kekkon-2, [Score=50.4, Expect=4e-06]} {RNA1509_11297} {RNA1310_8241, RNA1509_11297} {RNA1509_11297, RNA815_10557}
9.	MligTC455_40974	1363	28.4	Mlig455_019489	Neo: Int S/G2/M Age: logFC(26M/2M)=0.723 Regeneration-enriched BL: 1.836 Regeneration-enriched R6: 1.509	HNRNPA2B1	0.957	-	-	-	-	-	0.957	Mlig455_019489 {REF} {Length: 2430} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=122.9]; RNA recognition motif [PF16367.7, score=43.7]} {Human: ENSG00000122566, HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, [Score=202, Expect=7e-62]; ENSG00000135486, HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, [Score=192, Expect=8e-59]} {Mouse: ENSMUSG00000004980, Hnrnpa2b1, heterogeneous nuclear ribonucleoprotein A2/B1, [Score=202, Expect=1e-62]} {Dmel: FBgn0004903, Rb97D, Ribonuclear protein at 97D, [Score=196, Expect=1e-58]} {Celegans: WBGene00001999, hrp-1, Heterogeneous nuclear ribonucleoprotein A1, [Score=199, Expect=4e-61]} {Smed: dd_Smed_v6_1194_0_1, dd_Smed_v6_1194_0_1, [Score=243, Expect=3e-79]} {RNA1509_21450, RNA1509_23782, RNA1509_41048} {RNA1310_6454, RNA1509_23782, RNA1509_41048} {RNA1509_23782, RNA1509_41048, RNA815_8384.1}
10.	MligTC455_31990	61	1.28	Mlig455_070961	Neo: - Age: Down-Up-Down		0.955	-	-	-	-	0.955	-	Mlig455_070961 {REF} {Length: 873} {NoTransDecoderORF} {RNA1509_25657} {RNA1310_41739} {RNA815_26110}
11.	MligTC455_28550	147	3.06	Mlig455_048750	Neo: - Age: logFC(26M/2M)=1.038 Region-enriched R5: 2.521/0.03072	NDRG1	0.954	-	-	-	-	-	0.954	Mlig455_048750 {REF} {Length: 2415} {TRANSSPLICED} {Pfam: Ndr family [PF03096.16, score=186.2]} {Human: ENSG00000104419, NDRG1, N-myc downstream regulated 1, [Score=125, Expect=9e-32]; ENSG00000101079, NDRG3, NDRG family member 3, [Score=122, Expect=1e-30]} {Mouse: ENSMUSG00000027634, Ndrg3, N-myc downstream regulated gene 3, [Score=119, Expect=1e-29]; ENSMUSG00000005125, Ndrg1, N-myc downstream regulated gene 1, [Score=118, Expect=3e-29]} {Dmel: FBgn0043070, MESK2, Misexpression suppressor of KSR 2, [Score=127, Expect=2e-32]} {Celegans: WBGene00013020, Y48G10A.3, [RH, Score=117, Expect=1e-29]} {Smed: dd_Smed_v6_1911_0_1, dd_Smed_v6_1911_0_1, [Score=226, Expect=2e-70]} {RNA1509_13688} {RNA1310_24392} {RNA815_9919}
12.	MligTC455_14475	4578	95.38	Mlig455_040090	Neo: - Age: -		0.952	-	-	-	-	0.952	-	Mlig455_040090 {REF} {Length: 1993} {TRANSSPLICED} {Pfam: Tetraspanin family [PF00335.22, score=88.6]} {Mouse: ENSMUSG00000025511, Tspan4, tetraspanin 4, [Score=46.6, Expect=1e-05]} {Dmel: FBgn0036769, Tsp74F, Tetraspanin 74F, [RH, Score=92.4, Expect=9e-22]} {Smed: dd_Smed_v6_1808_0_1, dd_Smed_v6_1808_0_1, [RH, Score=187, Expect=3e-57]} {RNA1509_12533, RNA1509_1365} {RNA1310_13559.1, RNA1509_12533, RNA1509_1365} {RNA1509_12533, RNA1509_1365, RNA815_5097.1}
13.	MligTC455_08171	40	0.83	Mlig455_026527, Mlig455_032833	Neo: - Age: -		0.95	-	-	-	-	0.950	-	Mlig455_026527 {REF} {Length: 198} {NoTransDecoderORF} {RNA1310_39508} Mlig455_032833 {REF} {Length: 268} {NoTransDecoderORF} {RNA1310_39508}
14.	MligTC455_42319	160	3.34	Mlig455_019600	Neo: Int S/G2/M Age: logFC(26M/2M)=0.599	ZNHIT3	0.95	-	-	-	-	0.950	-	Mlig455_019600 {REF} {Length: 1499} {TRANSSPLICED} {tRNA: Undet(NNN),pseudo, score=29.1} {Pfam: HIT zinc finger [PF04438.18, score=21.2]} {Human: ENSG00000273611, ZNHIT3, zinc finger HIT-type containing 3, [RH, Score=75.5, Expect=4e-17]; ENSG00000278574, ZNHIT3, zinc finger HIT-type containing 3, [RH, Score=75.5, Expect=4e-17]} {Mouse: ENSMUSG00000020526, Znhit3, zinc finger, HIT type 3, [RH, Score=72.8, Expect=3e-16]} {Dmel: FBgn0034033, CG8204, [RH, Score=77.4, Expect=3e-18]} {RNA1509_12423} {RNA1310_40751} {RNA815_21136}

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