M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_55118

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_55118 7 0.14 Mlig455_034668

Neo: -

Age: -

 Mlig455_034668 {REF} {Length: 422}

Cumulative graph for MligTC455_55118

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_55118

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_55118 7 0.14 Mlig455_034668

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_034668 {REF} {Length: 422}
2. MligTC455_43866 19 0.4 Mlig455_043501

Neo: -

Age: -

 0.997 - - - - 0.997 - Mlig455_043501 {REF} {Length: 3209} {NoTransDecoderORF} {RNA1509_28510} {RNA1310_44786} {RNA815_33478}
3. MligTC455_00311 7 0.15 Mlig455_067588

Neo: -

Age: -

 0.994 - - - - 0.994 - Mlig455_067588 {REF} {Length: 462}
4. MligTC455_57429 7 0.14 Mlig455_059604

Neo: -

Age: -

 0.985 - - - - 0.985 - Mlig455_059604 {REF} {Length: 315} {NoTransDecoderORF}
5. MligTC455_07143 7 0.15 Mlig455_051063

Neo: -

Age: -

 0.983 - - - - 0.983 - Mlig455_051063 {REF} {Length: 941} {NoTransDecoderORF} {RNA1509_50426} {RNA1310_4534} {RNA815_32846}
6. MligTC455_52503 11 0.22 Mlig455_006602

Neo: -

Age: -

 0.982 - - - - 0.982 - Mlig455_006602 {REF} {Length: 1452} {RNA1509_9393} {RNA1310_41685} {RNA815_52637}
7. MligTC455_05844 13 0.28 Mlig455_045537

Neo: -

Age: -

 0.981 - - - - 0.981 - Mlig455_045537 {REF} {Length: 635} {Celegans: WBGene00019192, H12I13.3, [Score=85.5, Expect=1e-20]} {Smed: dd_Smed_v6_9974_1_7, dd_Smed_v6_9974_1_7, [Score=49.3, Expect=4e-08]} {RNA1509_51941} {RNA1310_3396.1} {RNA815_1342.1}
8. MligTC455_08519 2 0.04 Mlig455_015863

Neo: -

Age: -

 0.981 - - - - 0.981 - Mlig455_015863 {REF} {Length: 391} {NoTransDecoderORF} {RNA1509_55882} {RNA1310_45816.1} {RNA815_34089}
9. MligTC455_28435 6 0.13 Mlig455_066993

Neo: -

Age: -

 0.981 - - - - 0.981 - Mlig455_066993 {REF} {Length: 904} {NoTransDecoderORF} {RNA1509_18723} {RNA1310_2938.1} {RNA815_14343.2}
10. MligTC455_41367 7 0.15 Mlig455_011660, Mlig455_049926

Neo: -

Age: -

 0.981 - - - - 0.981 -

Mlig455_011660 {REF} {Length: 139} {NoTransDecoderORF} {RNA1509_9095} {RNA1310_45029.2} {RNA815_6607}

Mlig455_049926 {REF} {Length: 139} {NoTransDecoderORF} {RNA1509_9095} {RNA1310_45029.2} {RNA815_6607}
11. MligTC455_43530 8 0.17 Mlig455_060026

Neo: -

Age: -

 0.981 - - - - 0.981 - Mlig455_060026 {REF} {Length: 1282} {NoTransDecoderORF} {RNA1310_40016.2}
12. MligTC455_45387 13 0.28 Mlig455_034357

Neo: -

Age: -

 0.981 - - - - 0.981 - Mlig455_034357 {REF} {Length: 1028} {NoTransDecoderORF} {RNA1310_140207}
13. MligTC455_08968 15 0.31 Mlig455_027478

Neo: -

Age: -

 0.975 - - - - 0.975 - Mlig455_027478 {REF} {Length: 1103} {NoTransDecoderORF} {RNA1509_11387} {RNA1310_3923.1} {RNA815_19423}
14. MligTC455_36800 19 0.41 Mlig455_042163

Neo: -

Age: -

 0.974 - - - - 0.974 - Mlig455_042163 {REF} {Length: 4866} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=139.5]} {Mouse: ENSMUSG00000000216, Scnn1g, sodium channel, nonvoltage-gated 1 gamma, [Score=57.4, Expect=3e-08]} {Celegans: WBGene00016064, acd-1, [Score=51.2, Expect=1e-06]} {Smed: dd_Smed_v6_13943_0_1, dd_Smed_v6_13943_0_1, [Score=81.3, Expect=4e-16]} {RNA1509_59040} {RNA1310_26501} {RNA815_11672.2}
15. MligTC455_53738 469 9.77 Mlig455_038341, Mlig455_038349, Mlig455_038367, Mlig455_068286

Neo: -

Age: -

 0.974 - - - - 0.974 -

Mlig455_038341 {REF} {Length: 672} {RNA1310_69225} {RNA815_63432}

Mlig455_038349 {REF} {Length: 697} {RNA1310_69225} {RNA815_63432}

Mlig455_038367 {REF} {Length: 1012} {RNA1310_69225} {RNA815_63432}

Mlig455_068286 {REF} {Length: 1010} {RNA1310_69225} {RNA815_63432}
16. MligTC455_12088 61 1.26 Mlig455_057931, Mlig455_057966

Neo: -

Age: -

 0.968 - - - - 0.968 -

Mlig455_057931 {REF} {Length: 396} {RNA1310_75258} {RNA815_44558}

Mlig455_057966 {REF} {Length: 396} {RNA1310_75258} {RNA815_44558}
17. MligTC455_01122 9 0.19 Mlig455_050074

Neo: -

Age: -

 0.967 - - - - 0.967 - Mlig455_050074 {REF} {Length: 752} {NoTransDecoderORF} {RNA1509_32122} {RNA1310_75878} {RNA815_35548}
18. MligTC455_27968 139 2.9 Mlig455_006102

Neo: -

Age: -

 SYNCRIP 0.967 - - - - 0.967 - Mlig455_006102 {REF} {Length: 3069} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=86.6]; Double-stranded RNA binding motif [PF00035.28, score=67.2]; Occluded RNA-recognition motif [PF16842.7, score=20.3]} {Human: ENSG00000135316, SYNCRIP, synaptotagmin binding cytoplasmic RNA interacting protein, [Score=189, Expect=7e-52]} {Mouse: ENSMUSG00000032423, Syncrip, synaptotagmin binding, cytoplasmic RNA interacting protein, [Score=188, Expect=1e-51]} {Dmel: FBgn0038826, Syp, Syncrip, [Score=223, Expect=4e-63]} {Celegans: WBGene00015943, tiar-1, TIA-1/TIAL RNA binding protein homolog, [Score=63.9, Expect=2e-10]} {Smed: dd_Smed_v6_62256_0_1, dd_Smed_v6_62256_0_1, [Score=144, Expect=4e-37]} {RNA1509_30609} {RNA1310_8624} {RNA815_8285}
19. MligTC455_39198 13 0.26 Mlig455_008470, Mlig455_008478, Mlig455_009924

Neo: -

Age: -

 0.967 - - - - 0.967 -

Mlig455_008470 {REF} {Length: 1982} {RNA1509_8399} {RNA1310_67344} {RNA815_51157}

Mlig455_008478 {REF} {Length: 1387} {RNA1509_8399} {RNA1310_67344} {RNA815_51157}

Mlig455_009924 {REF} {Length: 670} {RNA1509_8399} {RNA1310_67344} {RNA815_51157}
20. MligTC455_17225 6 0.12 Mlig455_039944

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_039944 {REF} {Length: 436} {NoTransDecoderORF} {RNA1509_58333} {RNA1310_7959.1} {RNA815_41251}
21. MligTC455_18283 6 0.13 Mlig455_006370

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_006370 {REF} {Length: 1419} {RNA1509_44799} {RNA1310_25048} {RNA815_45775}
22. MligTC455_40054 19 0.4 Mlig455_016329

Neo: -

Age: -

 0.961 - - - - 0.961 - Mlig455_016329 {REF} {Length: 990} {NoTransDecoderORF} {RNA1310_133686}
23. MligTC455_07797 42 0.87 Mlig455_015725

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_015725 {REF} {Length: 711} {RNA1310_98453}
24. MligTC455_32534 166 3.46 Mlig455_034593, Mlig455_040890

Neo: -

Age: -

Region-enriched R4: 2.124/0.04916

 0.957 - - - - 0.957 -

Mlig455_034593 {REF} {Length: 1979} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_46555} {RNA1310_8675} {RNA815_3094.1}

Mlig455_040890 {REF} {Length: 980} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_23515} {RNA1310_8675} {RNA815_3094.1}
25. MligTC455_57090 4 0.08 Mlig455_008141

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_008141 {REF} {Length: 667} {Pfam: Poxvirus A32 protein [PF04665.14, score=19.2]} {RNA1509_49894} {RNA1310_30281.1} {RNA815_16288}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA