M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_43866

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_43866 19 0.40 Mlig455_043501

Neo: -

Age: -

 Mlig455_043501 {REF} {Length: 3209} {NoTransDecoderORF} {RNA1509_28510} {RNA1310_44786} {RNA815_33478}

Cumulative graph for MligTC455_43866

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 2.475 0.832 0.99997 1.00000
RegionR2 -0.957 0.832 0.99993 1.00000
RegionR3 -0.751 0.832 0.99995 1.00000
RegionR4 1.068 0.832 0.99996 1.00000
RegionR5 -0.54 0.832 0.99994 1.00000
RegionR6 -0.73 0.832 0.99997 1.00000
RegionR7 -0.268 0.832 0.99998 1.00000
RegionR8 -0.296 0.832 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.238 0.832 0.99998 1.00000
RegenerationR2 4.433 0.832 0.01012 0.16166
RegenerationR3 3.352 0.832 0.28596 0.71814
RegenerationR4 2.527 0.832 0.37264 0.79572
RegenerationR5 3.208 0.832 0.16137 0.58538
RegenerationR6 3.497 0.832 0.17197 0.50359
RegenerationBL 0.424 0.832 0.99999 1.00000
RegenerationTP -0.521 0.832 0.99996 1.00000


Genes with expression patterns similar to MligTC455_43866

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_43866 19 0.4 Mlig455_043501

Neo: -

Age: -

 3 - - - 1.000 1.000 1.000 Mlig455_043501 {REF} {Length: 3209} {NoTransDecoderORF} {RNA1509_28510} {RNA1310_44786} {RNA815_33478}
2. MligTC455_00311 7 0.15 Mlig455_067588

Neo: -

Age: -

 0.998 - - - - 0.998 - Mlig455_067588 {REF} {Length: 462}
3. MligTC455_55118 7 0.14 Mlig455_034668

Neo: -

Age: -

 0.997 - - - - 0.997 - Mlig455_034668 {REF} {Length: 422}
4. MligTC455_39631 51 1.06 Mlig455_013952

Neo: -

Age: Up-Down-Down

Region-enriched R2: 4.442/0.04477

 APBA1 0.994 - - - 0.994 - - Mlig455_013952 {REF} {Length: 5620} {Pfam: Phosphotyrosine interaction domain (PTB/PID) [PF00640.25, score=122.7]; PDZ domain [PF00595.26, score=86.8]; PDZ domain [PF17820.3, score=50.5]} {Human: ENSG00000107282, APBA1, amyloid beta precursor protein binding family A member 1, [RH, Score=478, Expect=3e-157]; ENSG00000034053, APBA2, amyloid beta precursor protein binding family A member 2, [RH, Score=475, Expect=2e-157]; ENSG00000276495, APBA2, amyloid beta precursor protein binding family A member 2, [RH, Score=475, Expect=2e-157]; ENSG00000276497, APBA1, amyloid beta precursor protein binding family A member 1, [RH, Score=474, Expect=3e-161]} {Mouse: ENSMUSG00000030519, Apba2, amyloid beta (A4) precursor protein-binding, family A, member 2, [RH, Score=477, Expect=2e-158]; ENSMUSG00000024897, Apba1, amyloid beta (A4) precursor protein binding, family A, member 1, [RH, Score=476, Expect=9e-157]} {Dmel: FBgn0052677, X11Lbeta, [Score=533, Expect=2e-168]} {Celegans: WBGene00002999, lin-10, [Score=520, Expect=1e-172]} {Smed: dd_Smed_v6_2836_0_2, dd_Smed_v6_2836_0_2, [Score=551, Expect=0.0]} {RNA1509_55204} {RNA1310_18864.1, RNA1509_55204} {RNA1509_55204, RNA815_11653}
5. MligTC455_52503 11 0.22 Mlig455_006602

Neo: -

Age: -

 0.982 - - - - 0.982 - Mlig455_006602 {REF} {Length: 1452} {RNA1509_9393} {RNA1310_41685} {RNA815_52637}
6. MligTC455_53738 469 9.77 Mlig455_038341, Mlig455_038349, Mlig455_038367, Mlig455_068286

Neo: -

Age: -

 0.977 - - - - 0.977 -

Mlig455_038341 {REF} {Length: 672} {RNA1310_69225} {RNA815_63432}

Mlig455_038349 {REF} {Length: 697} {RNA1310_69225} {RNA815_63432}

Mlig455_038367 {REF} {Length: 1012} {RNA1310_69225} {RNA815_63432}

Mlig455_068286 {REF} {Length: 1010} {RNA1310_69225} {RNA815_63432}
7. MligTC455_07143 7 0.15 Mlig455_051063

Neo: -

Age: -

 0.976 - - - - 0.976 - Mlig455_051063 {REF} {Length: 941} {NoTransDecoderORF} {RNA1509_50426} {RNA1310_4534} {RNA815_32846}
8. MligTC455_57429 7 0.14 Mlig455_059604

Neo: -

Age: -

 0.976 - - - - 0.976 - Mlig455_059604 {REF} {Length: 315} {NoTransDecoderORF}
9. MligTC455_12088 61 1.26 Mlig455_057931, Mlig455_057966

Neo: -

Age: -

 0.975 - - - - 0.975 -

Mlig455_057931 {REF} {Length: 396} {RNA1310_75258} {RNA815_44558}

Mlig455_057966 {REF} {Length: 396} {RNA1310_75258} {RNA815_44558}
10. MligTC455_39198 13 0.26 Mlig455_008470, Mlig455_008478, Mlig455_009924

Neo: -

Age: -

 0.974 - - - - 0.974 -

Mlig455_008470 {REF} {Length: 1982} {RNA1509_8399} {RNA1310_67344} {RNA815_51157}

Mlig455_008478 {REF} {Length: 1387} {RNA1509_8399} {RNA1310_67344} {RNA815_51157}

Mlig455_009924 {REF} {Length: 670} {RNA1509_8399} {RNA1310_67344} {RNA815_51157}
11. MligTC455_08519 2 0.04 Mlig455_015863

Neo: -

Age: -

 0.973 - - - - 0.973 - Mlig455_015863 {REF} {Length: 391} {NoTransDecoderORF} {RNA1509_55882} {RNA1310_45816.1} {RNA815_34089}
12. MligTC455_41367 7 0.15 Mlig455_011660, Mlig455_049926

Neo: -

Age: -

 0.973 - - - - 0.973 -

Mlig455_011660 {REF} {Length: 139} {NoTransDecoderORF} {RNA1509_9095} {RNA1310_45029.2} {RNA815_6607}

Mlig455_049926 {REF} {Length: 139} {NoTransDecoderORF} {RNA1509_9095} {RNA1310_45029.2} {RNA815_6607}
13. MligTC455_43530 8 0.17 Mlig455_060026

Neo: -

Age: -

 0.973 - - - - 0.973 - Mlig455_060026 {REF} {Length: 1282} {NoTransDecoderORF} {RNA1310_40016.2}
14. MligTC455_45387 13 0.28 Mlig455_034357

Neo: -

Age: -

 0.973 - - - - 0.973 - Mlig455_034357 {REF} {Length: 1028} {NoTransDecoderORF} {RNA1310_140207}
15. MligTC455_05844 13 0.28 Mlig455_045537

Neo: -

Age: -

 0.972 - - - - 0.972 - Mlig455_045537 {REF} {Length: 635} {Celegans: WBGene00019192, H12I13.3, [Score=85.5, Expect=1e-20]} {Smed: dd_Smed_v6_9974_1_7, dd_Smed_v6_9974_1_7, [Score=49.3, Expect=4e-08]} {RNA1509_51941} {RNA1310_3396.1} {RNA815_1342.1}
16. MligTC455_17225 6 0.12 Mlig455_039944

Neo: -

Age: -

 0.972 - - - - 0.972 - Mlig455_039944 {REF} {Length: 436} {NoTransDecoderORF} {RNA1509_58333} {RNA1310_7959.1} {RNA815_41251}
17. MligTC455_27968 139 2.9 Mlig455_006102

Neo: -

Age: -

 SYNCRIP 0.972 - - - - 0.972 - Mlig455_006102 {REF} {Length: 3069} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=86.6]; Double-stranded RNA binding motif [PF00035.28, score=67.2]; Occluded RNA-recognition motif [PF16842.7, score=20.3]} {Human: ENSG00000135316, SYNCRIP, synaptotagmin binding cytoplasmic RNA interacting protein, [Score=189, Expect=7e-52]} {Mouse: ENSMUSG00000032423, Syncrip, synaptotagmin binding, cytoplasmic RNA interacting protein, [Score=188, Expect=1e-51]} {Dmel: FBgn0038826, Syp, Syncrip, [Score=223, Expect=4e-63]} {Celegans: WBGene00015943, tiar-1, TIA-1/TIAL RNA binding protein homolog, [Score=63.9, Expect=2e-10]} {Smed: dd_Smed_v6_62256_0_1, dd_Smed_v6_62256_0_1, [Score=144, Expect=4e-37]} {RNA1509_30609} {RNA1310_8624} {RNA815_8285}
18. MligTC455_28435 6 0.13 Mlig455_066993

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_066993 {REF} {Length: 904} {NoTransDecoderORF} {RNA1509_18723} {RNA1310_2938.1} {RNA815_14343.2}
19. MligTC455_08651 18 0.38 Mlig455_039954

Neo: -

Age: -

 0.969 - - - 0.969 - - Mlig455_039954 {REF} {Length: 1358} {NoTransDecoderORF} {RNA1509_37916} {RNA1310_36827} {RNA815_34017}
20. MligTC455_32534 166 3.46 Mlig455_034593, Mlig455_040890

Neo: -

Age: -

Region-enriched R4: 2.124/0.04916

 0.969 - - - - 0.969 -

Mlig455_034593 {REF} {Length: 1979} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_46555} {RNA1310_8675} {RNA815_3094.1}

Mlig455_040890 {REF} {Length: 980} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_23515} {RNA1310_8675} {RNA815_3094.1}
21. MligTC455_17877 64 1.33 Mlig455_048239

Neo: -

Age: -

 0.966 - - - 0.966 - - Mlig455_048239 {REF} {Length: 469} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_36834} {RNA1310_25226.1} {RNA815_34505}
22. MligTC455_21753 67 1.39 Mlig455_023195, Mlig455_025831

Neo: -

Age: -

 0.965 - - - 0.965 - -

Mlig455_023195 {REF} {Length: 660} {NoTransDecoderORF} {RNA1310_73607.2} {RNA815_19357}

Mlig455_025831 {REF} {Length: 410} {NoTransDecoderORF} {RNA1310_98124} {RNA815_19357}
23. MligTC455_40054 19 0.4 Mlig455_016329

Neo: -

Age: -

 0.965 - - - - 0.965 - Mlig455_016329 {REF} {Length: 990} {NoTransDecoderORF} {RNA1310_133686}
24. MligTC455_45581 49 1.03 Mlig455_045128, Mlig455_045162

Neo: -

Age: Down-Down-Up

Region-enriched R7: 4.346/0.00514

 0.962 - - - 0.962 - -

Mlig455_045128 {REF} {Length: 2950} {RNA1509_29, RNA1509_3187} {RNA1310_4199.2, RNA1509_3187} {RNA1509_3187, RNA815_8541.1}

Mlig455_045162 {REF} {Length: 620} {NoTransDecoderORF} {RNA1509_10639} {RNA1310_4199.2} {RNA815_24585}
25. MligTC455_08968 15 0.31 Mlig455_027478

Neo: -

Age: -

 0.961 - - - - 0.961 - Mlig455_027478 {REF} {Length: 1103} {NoTransDecoderORF} {RNA1509_11387} {RNA1310_3923.1} {RNA815_19423}
26. MligTC455_37483 65 1.35 Mlig455_039434

Neo: -

Age: Down-Up-Down

Regeneration-enriched R4: 9.467
Regeneration-enriched R5: 6.027

 0.961 - - - - 0.961 - Mlig455_039434 {REF} {Length: 5360} {RNA1310_7246} {RNA815_26161}
27. MligTC455_12557 77 1.59 Mlig455_008709

Neo: Germline

Age: -

 0.96 - - - - 0.960 - Mlig455_008709 {REF} {Length: 1113} {RNA1310_39017} {RNA815_47038}
28. MligTC455_14026 38 0.8 Mlig455_023627

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_023627 {REF} {Length: 1475} {Pfam: Flagellar-associated PapD-like [PF14874.8, score=30.1]; CS domain [PF04969.18, score=27.0]} {RNA1509_6357} {RNA1310_134529} {RNA815_1252}
29. MligTC455_30389 116 2.41 Mlig455_029602

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_029602 {REF} {Length: 2395} {RNA1509_16871} {RNA1310_10374.1} {RNA815_9291}
30. MligTC455_36800 19 0.41 Mlig455_042163

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_042163 {REF} {Length: 4866} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=139.5]} {Mouse: ENSMUSG00000000216, Scnn1g, sodium channel, nonvoltage-gated 1 gamma, [Score=57.4, Expect=3e-08]} {Celegans: WBGene00016064, acd-1, [Score=51.2, Expect=1e-06]} {Smed: dd_Smed_v6_13943_0_1, dd_Smed_v6_13943_0_1, [Score=81.3, Expect=4e-16]} {RNA1509_59040} {RNA1310_26501} {RNA815_11672.2}
31. MligTC455_57090 4 0.08 Mlig455_008141

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_008141 {REF} {Length: 667} {Pfam: Poxvirus A32 protein [PF04665.14, score=19.2]} {RNA1509_49894} {RNA1310_30281.1} {RNA815_16288}
32. MligTC455_42559 17 0.36 Mlig455_064128

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_064128 {REF} {Length: 1837} {Pfam: Glycine rich protein [PF12810.9, score=23.2]} {RNA1310_112308} {RNA815_32418}
33. MligTC455_27969 203 4.24 Mlig455_055219, Mlig455_055313

Neo: -

Age: -

 ADARB1 0.952 - - - - 0.952 -

Mlig455_055219 {REF} {Length: 3087} {TRANSSPLICED} {Pfam: Adenosine-deaminase (editase) domain [PF02137.20, score=288.8]; Double-stranded RNA binding motif [PF00035.28, score=44.8]} {Human: ENSG00000197381, ADARB1, adenosine deaminase, RNA specific B1, [RH, Score=346, Expect=9e-110]} {Mouse: ENSMUSG00000020262, Adarb1, adenosine deaminase, RNA-specific, B1, [RH, Score=358, Expect=3e-114]} {Dmel: FBgn0026086, Adar, Adenosine deaminase acting on RNA, [RH, Score=296, Expect=2e-91]} {Celegans: WBGene00000080, adr-2, Probable double-stranded RNA-specific adenosine deaminase, [RH, Score=184, Expect=2e-51]} {Smed: dd_Smed_v6_4538_0_1, dd_Smed_v6_4538_0_1, [RH, Score=235, Expect=5e-68]} {RNA1509_57256} {RNA1310_8624} {RNA815_8285}

Mlig455_055313 {REF} {Length: 2868} {TRANSSPLICED} {Pfam: Adenosine-deaminase (editase) domain [PF02137.20, score=289.4]; Double-stranded RNA binding motif [PF00035.28, score=44.8]} {Human: ENSG00000197381, ADARB1, adenosine deaminase, RNA specific B1, [RH, Score=347, Expect=5e-110]} {Mouse: ENSMUSG00000020262, Adarb1, adenosine deaminase, RNA-specific, B1, [RH, Score=356, Expect=1e-113]} {Dmel: FBgn0026086, Adar, Adenosine deaminase acting on RNA, [RH, Score=290, Expect=8e-89]} {Celegans: WBGene00000080, adr-2, Probable double-stranded RNA-specific adenosine deaminase, [RH, Score=184, Expect=3e-51]} {Smed: dd_Smed_v6_4538_0_1, dd_Smed_v6_4538_0_1, [RH, Score=236, Expect=3e-68]} {RNA1509_57256, RNA1509_57608} {RNA1310_8624, RNA1509_57256, RNA1509_57608} {RNA1509_57256, RNA1509_57608, RNA815_8285}
34. MligTC455_17878 60 1.25 Mlig455_048273

Neo: -

Age: -

 0.951 - - - 0.951 - - Mlig455_048273 {REF} {Length: 789} {TRANSSPLICED} {RNA1509_36834} {RNA1310_25226.1} {RNA815_34505}
35. MligTC455_24405 48 0.99 Mlig455_027683

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.672

 0.95 - - - 0.950 - - Mlig455_027683 {REF} {Length: 2258} {RNA1310_62452} {RNA815_35919}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA