M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_00694

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_00694 63 1.30 Mlig455_028833

Neo: -

Age: -

 Mlig455_028833 {REF} {Length: 243} {NoTransDecoderORF}

Cumulative graph for MligTC455_00694

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.814 0.649 1.00000 1.00000
RegionR2 1.64 0.649 0.99995 1.00000
RegionR3 -0.24 0.649 0.99994 1.00000
RegionR4 -2.06 0.649 0.99982 1.00000
RegionR5 -1.246 0.649 0.99992 1.00000
RegionR6 -0.749 0.649 0.99995 1.00000
RegionR7 1.17 0.649 0.99998 1.00000
RegionR8 2.299 0.649 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.432 0.649 1.00000 1.00000
RegenerationR2 1.415 0.649 0.99988 1.00000
RegenerationR3 1.659 0.649 1.00000 1.00000
RegenerationR4 0.399 0.649 0.99961 1.00000
RegenerationR5 1.089 0.649 0.99963 1.00000
RegenerationR6 2.485 0.649 0.99952 1.00000
RegenerationBL -2.684 0.649 0.99991 1.00000
RegenerationTP -1.614 0.649 0.99993 1.00000


Genes with expression patterns similar to MligTC455_00694

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_00694 63 1.3 Mlig455_028833

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_028833 {REF} {Length: 243} {NoTransDecoderORF}
2. MligTC455_03359 17 0.35 Mlig455_037386

Neo: -

Age: -

 0.976 - - - - 0.976 - Mlig455_037386 {REF} {Length: 1323} {Pfam: Lectin C-type domain [PF00059.23, score=22.2]} {RNA1310_22051} {RNA815_28288}
3. MligTC455_24032 164 3.42 Mlig455_001002

Neo: -

Age: Up-Down-Down

 DSCAML1 0.974 - - - - 0.974 - Mlig455_001002 {REF} {Length: 8646} {Pfam: Immunoglobulin domain [PF13927.8, score=141.9]; Fibronectin type III domain [PF00041.23, score=127.5]; Immunoglobulin I-set domain [PF07679.18, score=114.8]; Immunoglobulin domain [PF13895.8, score=78.5]; Immunoglobulin domain [PF00047.27, score=75.8]; Immunoglobulin V-set domain [PF07686.19, score=48.9]} {Human: ENSG00000177103, DSCAML1, DS cell adhesion molecule like 1, [Score=140, Expect=3e-32]} {Mouse: ENSMUSG00000032087, Dscaml1, DS cell adhesion molecule like 1, [Score=138, Expect=8e-32]} {Dmel: FBgn0263219, Dscam4, Down syndrome cell adhesion molecule 4, [Score=170, Expect=9e-42]} {Celegans: WBGene00004371, rig-4, Protein sidekick homolog, [Score=86.3, Expect=3e-16]} {Smed: dd_Smed_v6_3024_0_2, dd_Smed_v6_3024_0_2, [Score=287, Expect=2e-77]} {RNA1509_57897, RNA1509_9070} {RNA1310_454.1, RNA1509_57897, RNA1509_9070} {RNA1509_57897, RNA1509_9070, RNA815_227}
4. MligTC455_39857 27 0.55 Mlig455_037127

Neo: -

Age: Down-Down-Down

 NECAB1 0.97 - - - - 0.970 - Mlig455_037127 {REF} {Length: 1710} {Pfam: EF-hand domain [PF13405.8, score=34.9]; EF hand [PF00036.34, score=33.1]; EF-hand domain pair [PF13499.8, score=27.6]; EF-hand domain pair [PF13833.8, score=27.3]; Antibiotic biosynthesis monooxygenase [PF03992.18, score=25.2]; EF hand [PF13202.8, score=23.2]} {Human: ENSG00000123119, NECAB1, N-terminal EF-hand calcium binding protein 1, [Score=186, Expect=7e-55]} {Mouse: ENSMUSG00000040536, Necab1, N-terminal EF-hand calcium binding protein 1, [Score=180, Expect=7e-53]} {RNA1310_5770} {RNA815_27367}
5. MligTC455_25585 186 3.88 Mlig455_018990, Mlig455_042225, Mlig455_042228, Mlig455_055712, Mlig455_055727

Neo: -

Age: -

 LRMP 0.969 - - - - 0.969 -

Mlig455_018990 {REF} {Length: 3869} {Pfam: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 [PF10473.11, score=22.5]} {RNA1509_19148} {RNA1310_16173} {RNA815_20593}

Mlig455_042225 {REF} {Length: 1434} {Pfam: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 [PF10473.11, score=25.8]} {RNA1310_113381}

Mlig455_042228 {REF} {Length: 2208} {Pfam: MRVI1 protein [PF05781.14, score=32.9]} {Human: ENSG00000118308, LRMP, lymphoid restricted membrane protein, [Score=47.8, Expect=1e-05]} {RNA1509_19148} {RNA1310_16173} {RNA815_20593}

Mlig455_055712 {REF} {Length: 3372} {Pfam: MRVI1 protein [PF05781.14, score=32.5]} {Mouse: ENSMUSG00000030263, Lrmp, lymphoid-restricted membrane protein, [RH, Score=52.0, Expect=2e-06]} {RNA1509_19148} {RNA1310_16173} {RNA815_20593}

Mlig455_055727 {REF} {Length: 1453} {RNA1509_19148} {RNA1310_16173} {RNA815_20593}
6. MligTC455_30313 9 0.19 Mlig455_060053

Neo: -

Age: -

 ANKRD44 0.969 - - - - 0.969 - Mlig455_060053 {REF} {Length: 2604} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=139.0]; Ankyrin repeats (many copies) [PF13637.8, score=113.0]; Protein kinase domain [PF00069.27, score=87.0]; Ankyrin repeat [PF00023.32, score=84.0]; Ankyrin repeat [PF13606.8, score=74.4]; Ankyrin repeats (many copies) [PF13857.8, score=67.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=64.1]; L27_2 [PF09045.12, score=23.8]; Baculovirus polyhedron envelope protein, PEP, N terminus [PF04512.14, score=21.4]} {Human: ENSG00000065413, ANKRD44, ankyrin repeat domain 44, [Score=86.7, Expect=8e-17]} {Mouse: ENSMUSG00000040086, Tnni3k, TNNI3 interacting kinase, [Score=92.0, Expect=9e-19]} {Dmel: FBgn0035934, TrpA1, Transient receptor potential cation channel A1, [Score=64.7, Expect=2e-10]} {Celegans: WBGene00006616, trp-4, TRP (Transient receptor potential) channel family, [Score=76.3, Expect=6e-14]} {Smed: dd_Smed_v6_4322_0_1, dd_Smed_v6_4322_0_1, [Score=78.2, Expect=7e-15]} {RNA1509_25652} {RNA1310_24355.1} {RNA815_2803.1}
7. MligTC455_26118 25 0.52 Mlig455_036932

Neo: -

Age: logFC(26M/2M)=0.870

 0.968 - - - - 0.968 - Mlig455_036932 {REF} {Length: 2939} {RNA1509_28486} {RNA1310_24343.1} {RNA815_8096}
8. MligTC455_14659 29 0.6 Mlig455_008399

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_008399 {REF} {Length: 613} {NoTransDecoderORF} {RNA1509_54373} {RNA1310_125370}
9. MligTC455_50075 291 6.07 Mlig455_042192, Mlig455_059013

Neo: -

Age: -

 0.961 - - - - 0.961 -

Mlig455_042192 {REF} {Length: 3775} {RNA1509_21332, RNA1509_22951} {RNA1310_3394, RNA1509_22951} {RNA1509_22951, RNA815_2506.1}

Mlig455_059013 {REF} {Length: 3781} {RNA1509_21332} {RNA1310_3394, RNA1509_21332} {RNA1509_21332, RNA815_2506.1}
10. MligTC455_07826 23 0.48 Mlig455_056551

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_056551 {REF} {Length: 3263} {Pfam: PH domain [PF00169.31, score=23.0]} {RNA1310_46895.1} {RNA815_27323}
11. MligTC455_29109 90 1.88 Mlig455_057258

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_057258 {REF} {Length: 2483} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_21788} {RNA815_10097}
12. MligTC455_43290 126 2.63 Mlig455_024815, Mlig455_024894

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.478

 0.957 - - - - 0.957 -

Mlig455_024815 {REF} {Length: 1840} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=96.1]} {RNA1509_31697} {RNA1310_20977} {RNA815_13582}

Mlig455_024894 {REF} {Length: 2175} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=116.4]} {Smed: dd_Smed_v6_26469_0_1, dd_Smed_v6_26469_0_1, [Score=49.7, Expect=6e-07]} {RNA1509_31697} {RNA1310_20977} {RNA815_13582}
13. MligTC455_45708 13 0.27 Mlig455_009331

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_009331 {REF} {Length: 3871}
14. MligTC455_30310 35 0.72 Mlig455_064894

Neo: -

Age: logFC(26M/2M)=-0.316

 MAP3K19 0.954 - - - - 0.954 - Mlig455_064894 {REF} {Length: 4973} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=251.2]; Ankyrin repeats (many copies) [PF13637.8, score=203.0]; Protein kinase domain [PF00069.27, score=179.1]; Ankyrin repeat [PF00023.32, score=143.7]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=137.9]; Ankyrin repeat [PF13606.8, score=116.2]; Ankyrin repeats (many copies) [PF13857.8, score=89.6]; Baculovirus polyhedron envelope protein, PEP, N terminus [PF04512.14, score=38.5]; L27_2 [PF09045.12, score=36.9]; Aft1 HRR domain [PF11787.10, score=33.7]; ABC1 atypical kinase-like domain [PF03109.18, score=28.9]; Fungal protein kinase [PF17667.3, score=23.6]; Bim protein N-terminus [PF06773.13, score=22.8]; Protein of unknown function (DUF3105) [PF11303.10, score=22.6]; Catalytic beta propeller domain of bacteriophage endosialidase [PF12217.10, score=22.5]} {Human: ENSG00000176601, MAP3K19, mitogen-activated protein kinase kinase kinase 19, [Score=154, Expect=6e-39]} {Mouse: ENSMUSG00000051590, Map3k19, mitogen-activated protein kinase kinase kinase 19, [Score=155, Expect=2e-39]} {Dmel: FBgn0266465, GckIII, Germinal centre kinase III, [Score=142, Expect=9e-35]} {Celegans: WBGene00022603, gck-2, Mitogen-activated protein kinase kinase kinase kinase, [Score=135, Expect=3e-32]} {Smed: dd_Smed_v6_9984_0_1, dd_Smed_v6_9984_0_1, [Score=144, Expect=8e-38]} {RNA1509_25652} {RNA1310_24355.1} {RNA815_2803.1}
15. MligTC455_47308 51 1.05 Mlig455_047831

Neo: -

Age: -

 NSF 0.953 - - - - 0.953 - Mlig455_047831 {REF} {Length: 3226} {TRANSSPLICED} {Pfam: ATPase family associated with various cellular activities (AAA) [PF00004.31, score=169.7]; AAA+ lid domain [PF17862.3, score=38.2]; AAA ATPase domain [PF13191.8, score=34.7]; Cell division protein 48 (CDC48), N-terminal domain [PF02359.20, score=32.6]; AAA domain [PF13401.8, score=29.7]; AAA domain [PF13173.8, score=29.2]; TIP49 P-loop domain [PF06068.15, score=28.7]; NACHT domain [PF05729.14, score=27.2]; AAA domain (dynein-related subfamily) [PF07728.16, score=26.0]; AAA domain (Cdc48 subfamily) [PF07724.16, score=25.6]; AAA domain [PF13238.8, score=25.5]; AAA domain [PF13671.8, score=22.9]; Threonylcarbamoyl adenosine biosynthesis protein TsaE [PF02367.19, score=22.5]; Cell division protein 48 (CDC48), domain 2 [PF02933.19, score=22.1]; RNA helicase [PF00910.24, score=21.9]; Holliday junction DNA helicase RuvB P-loop domain [PF05496.14, score=21.8]; ATPase domain predominantly from Archaea [PF01637.20, score=21.2]; Magnesium chelatase, subunit ChlI [PF01078.23, score=20.7]} {Human: ENSG00000276262, NSF, N-ethylmaleimide sensitive factor, vesicle fusing ATPase, [RH, Score=760, Expect=0.0]; ENSG00000278174, NSF, N-ethylmaleimide sensitive factor, vesicle fusing ATPase, [RH, Score=760, Expect=0.0]; ENSG00000073969, NSF, N-ethylmaleimide sensitive factor, vesicle fusing ATPase, [RH, Score=760, Expect=0.0]} {Mouse: ENSMUSG00000034187, Nsf, N-ethylmaleimide sensitive fusion protein, [RH, Score=756, Expect=0.0]} {Dmel: FBgn0266464, Nsf2, N-ethylmaleimide-sensitive factor 2, [RH, Score=817, Expect=0.0]} {Celegans: WBGene00003818, nsf-1, Vesicle-fusing ATPase, [RH, Score=677, Expect=0.0]} {Smed: dd_Smed_v6_3364_0_1, dd_Smed_v6_3364_0_1, [RH, Score=630, Expect=0.0]} {RNA1509_35440} {RNA1310_7474} {RNA815_4714}
16. MligTC455_17040 75 1.57 Mlig455_029809

Neo: -

Age: -

Region-enriched R7: 3.328/0.01605

 ARHGAP39 0.952 - - - - 0.952 - Mlig455_029809 {REF} {Length: 3933} {Pfam: MyTH4 domain [PF00784.19, score=92.2]; RhoGAP domain [PF00620.29, score=84.9]} {Human: ENSG00000147799, ARHGAP39, Rho GTPase activating protein 39, [Score=266, Expect=1e-79]} {Mouse: ENSMUSG00000033697, Arhgap39, Rho GTPase activating protein 39, [Score=265, Expect=4e-79]} {Dmel: FBgn0038853, RhoGAP93B, Rho GTPase activating protein at 93B, [Score=221, Expect=1e-63]} {Celegans: WBGene00022365, Y92H12BL.4, [Score=149, Expect=1e-40]} {Smed: dd_Smed_v6_5836_0_1, dd_Smed_v6_5836_0_1, [Score=125, Expect=4e-31]} {RNA1310_44535} {RNA815_34943}
17. MligTC455_27532 14 0.3 Mlig455_050096

Neo: -

Age: -

 ITPKA 0.952 - - - - 0.952 - Mlig455_050096 {REF} {Length: 2853} {Pfam: Inositol polyphosphate kinase [PF03770.18, score=89.5]} {Human: ENSG00000137825, ITPKA, inositol-trisphosphate 3-kinase A, [Score=206, Expect=4e-60]; ENSG00000143772, ITPKB, inositol-trisphosphate 3-kinase B, [Score=198, Expect=2e-54]} {Mouse: ENSMUSG00000027296, Itpka, inositol 1,4,5-trisphosphate 3-kinase A, [Score=207, Expect=6e-61]; ENSMUSG00000003752, Itpkc, inositol 1,4,5-trisphosphate 3-kinase C, [Score=197, Expect=2e-55]; ENSMUSG00000038855, Itpkb, inositol 1,4,5-trisphosphate 3-kinase B, [Score=197, Expect=4e-54]} {Dmel: FBgn0032147, IP3K1, Inositol 1,4,5-triphosphate kinase 1, [Score=180, Expect=4e-52]} {Celegans: WBGene00002979, lfe-2, Inositol-trisphosphate 3-kinase homolog, [Score=207, Expect=8e-62]} {Smed: dd_Smed_v6_3687_0_2, dd_Smed_v6_3687_0_2, [Score=182, Expect=6e-51]} {RNA1509_15208} {RNA1310_45410.1} {RNA815_8803}
18. MligTC455_30868 86 1.8 Mlig455_007682, Mlig455_020997

Neo: -

Age: -

 0.952 - - - - 0.952 -

Mlig455_007682 {REF} {Length: 3292} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=45.5]; Ankyrin repeat [PF13606.8, score=36.3]; Ankyrin repeat [PF00023.32, score=35.1]; Ankyrin repeats (many copies) [PF13637.8, score=26.8]; Ankyrin repeats (many copies) [PF13857.8, score=26.3]} {RNA1509_14810} {RNA1310_3488.1, RNA1509_14810} {RNA1509_14810, RNA815_6042.1}

Mlig455_020997 {REF} {Length: 4389} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=45.5]; Ankyrin repeat [PF13606.8, score=36.3]; Ankyrin repeat [PF00023.32, score=35.1]; Ankyrin repeats (many copies) [PF13637.8, score=26.8]; Ankyrin repeats (many copies) [PF13857.8, score=26.3]} {RNA1509_14810} {RNA1310_3488.1} {RNA815_6042.1}
19. MligTC455_47824 375 7.82 Mlig455_045590, Mlig455_045647

Neo: -

Age: Up-Down-Down

 0.952 - - - - 0.952 -

Mlig455_045590 {REF} {Length: 6854} {TRANSSPLICED} {Pfam: Band 3 cytoplasmic domain [PF07565.15, score=20.5]} {Smed: dd_Smed_v6_9699_0_3, dd_Smed_v6_9699_0_3, [RH, Score=62.0, Expect=2e-09]} {RNA1509_11574} {RNA1310_1258} {RNA815_816}

Mlig455_045647 {REF} {Length: 7619} {TRANSSPLICED} {Pfam: Band 3 cytoplasmic domain [PF07565.15, score=21.6]} {Smed: dd_Smed_v6_9699_0_3, dd_Smed_v6_9699_0_3, [RH, Score=62.0, Expect=2e-09]} {RNA1509_11574, RNA1509_19895} {RNA1310_1258, RNA1509_11574, RNA1509_19895} {RNA1509_11574, RNA1509_19895, RNA815_816}
20. MligTC455_20111 14 0.29 Mlig455_028941

Neo: -

Age: -

 IGSF9 0.951 - - - - 0.951 - Mlig455_028941 {REF} {Length: 3748} {Pfam: Immunoglobulin domain [PF13927.8, score=128.9]; Immunoglobulin I-set domain [PF07679.18, score=93.2]; Immunoglobulin domain [PF13895.8, score=81.2]; Immunoglobulin domain [PF00047.27, score=74.0]; Immunoglobulin V-set domain [PF07686.19, score=70.7]; Fibronectin type III domain [PF00041.23, score=38.4]; Izumo-like Immunoglobulin domain [PF16706.7, score=26.6]; Immunoglobulin domain [PF18452.3, score=21.2]} {Human: ENSG00000085552, IGSF9, immunoglobulin superfamily member 9, [Score=149, Expect=1e-35]} {Mouse: ENSMUSG00000037995, Igsf9, immunoglobulin superfamily, member 9, [Score=149, Expect=6e-36]; ENSMUSG00000034275, Igsf9b, immunoglobulin superfamily, member 9B, [Score=145, Expect=8e-35]} {Dmel: FBgn0028482, bdl, borderless, [Score=125, Expect=6e-29]} {Celegans: WBGene00020130, igcm-2, ImmunoGlobulin-like Cell adhesion Molecule family, [Score=137, Expect=6e-33]} {Smed: dd_Smed_v6_17743_0_1, dd_Smed_v6_17743_0_1, [Score=140, Expect=9e-34]} {RNA1310_20896} {RNA815_28649}
21. MligTC455_39771 140 2.91 Mlig455_016986

Neo: -

Age: -

Region-enriched R7: 2.817/0.02272

 GEM 0.95 - - - - 0.950 - Mlig455_016986 {REF} {Length: 2406} {Pfam: Ras family [PF00071.24, score=42.2]} {Human: ENSG00000164949, GEM, GTP binding protein overexpressed in skeletal muscle, [Score=70.1, Expect=2e-12]} {Mouse: ENSMUSG00000028214, Gem, GTP binding protein (gene overexpressed in skeletal muscle), [Score=70.1, Expect=9e-13]} {Dmel: FBgn0085419, Rgk2, Rad, Gem/Kir family member 2, [Score=120, Expect=2e-28]} {Celegans: WBGene00013124, Y52B11A.4, [Score=66.2, Expect=2e-11]} {Smed: dd_Smed_v6_11010_0_1, dd_Smed_v6_11010_0_1, [Score=127, Expect=8e-32]} {RNA1310_32533.2} {RNA815_17720}
22. MligTC455_42092 367 7.65 Mlig455_004422, Mlig455_004425, Mlig455_037263

Neo: -

Age: Up-Down-Up

 KIAA1217 0.95 - - - - 0.950 -

Mlig455_004422 {REF} {Length: 2718} {Human: ENSG00000120549, KIAA1217, KIAA1217, [Score=56.2, Expect=2e-07]} {Mouse: ENSMUSG00000036617, Etl4, enhancer trap locus 4, [Score=55.1, Expect=3e-07]; ENSMUSG00000038453, Srcin1, SRC kinase signaling inhibitor 1, [Score=52.8, Expect=2e-06]} {Dmel: FBgn0023531, CG32809, [Score=52.0, Expect=2e-06]} {RNA1310_27406} {RNA815_32070}

Mlig455_004425 {REF} {Length: 1652} {RNA1310_27406} {RNA815_32070}

Mlig455_037263 {REF} {Length: 1802} {RNA1310_27406} {RNA815_32070}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA