TomoSeq data search

Data search

Results for MligTC455_07322

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_07322	15	0.32	Mlig455_015072	Neo: - Age: -		Mlig455_015072 {REF} {Length: 1524} {RNA1509_58516} {RNA1310_95465} {RNA815_5756}

Cluster

Total UMI counts

Global CPM

Transcripts

Cumulative graph for MligTC455_07322

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-0.594	0.706	0.99997	1.00000
RegionR2	3.104	0.706	0.99995	1.00000
RegionR3	1.461	0.706	0.99974	1.00000
RegionR4	-1.784	0.706	1.00000	1.00000
RegionR5	-0.918	0.706	0.99985	1.00000
RegionR6	-1.487	0.706	0.99985	1.00000
RegionR7	-0.601	0.706	0.99988	1.00000
RegionR8	0.818	0.706	0.99988	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-2.032	0.706	0.99993	1.00000
RegenerationR2	-1.84	0.706	0.00731	0.13594
RegenerationR3	-0.999	0.706	0.99971	1.00000
RegenerationR4	0.352	0.706	0.99958	1.00000
RegenerationR5	0.281	0.706	0.99964	1.00000
RegenerationR6	1.86	0.706	0.99965	1.00000
RegenerationBL	0.903	0.706	1.00000	1.00000
RegenerationTP	-1.878	0.706	0.99992	1.00000

Genes with expression patterns similar to MligTC455_07322

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_07322	15	0.32	Mlig455_015072	Neo: - Age: -		2	-	-	1.000	-	1.000	-	Mlig455_015072 {REF} {Length: 1524} {RNA1509_58516} {RNA1310_95465} {RNA815_5756}
2.	MligTC455_09432	22	0.46	Mlig455_019395	Neo: - Age: Up-Down-Up	GRIK4	1	-	-	1.000	-	-	-	Mlig455_019395 {REF} {Length: 2144} {Pfam: Ligand-gated ion channel [PF00060.28, score=23.4]} {Human: ENSG00000149403, GRIK4, glutamate ionotropic receptor kainate type subunit 4, [Score=57.0, Expect=5e-09]} {Mouse: ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=57.4, Expect=2e-09]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=54.7, Expect=2e-08]} {Dmel: FBgn0039927, CG11155, [Score=58.2, Expect=1e-09]} {Smed: dd_Smed_v6_21015_0_2, dd_Smed_v6_21015_0_2, [Score=97.1, Expect=5e-24]} {RNA1509_10728} {RNA1310_6710} {RNA815_12426}
3.	MligTC455_07393	66	1.37	Mlig455_006210	Neo: - Age: -		0.997	-	-	0.997	-	-	-	Mlig455_006210 {REF} {Length: 804} {NoTransDecoderORF} {RNA1310_52033}
4.	MligTC455_07394	59	1.22	Mlig455_057223	Neo: Int S/G2/M Age: -		0.997	-	-	0.997	-	-	-	Mlig455_057223 {REF} {Length: 738} {NoTransDecoderORF} {RNA1310_52033}
5.	MligTC455_12972	4	0.08	Mlig455_008186	Neo: - Age: -	KREMEN1	0.989	-	-	0.989	-	-	-	Mlig455_008186 {REF} {Length: 1218} {Pfam: WSC domain [PF01822.21, score=61.7]; PAN domain [PF00024.28, score=22.7]} {Human: ENSG00000183762, KREMEN1, kringle containing transmembrane protein 1, [Score=59.7, Expect=3e-10]} {Mouse: ENSMUSG00000020393, Kremen1, kringle containing transmembrane protein 1, [Score=57.8, Expect=1e-09]} {Dmel: FBgn0015360, oxt, peptide O-xylosyltransferase, [Score=61.2, Expect=7e-11]} {RNA1509_45595} {RNA1310_9218} {RNA815_6917.1}
6.	MligTC455_56421	59	1.23	Mlig455_066824	Neo: - Age: -		0.987	-	-	0.987	-	-	-	Mlig455_066824 {REF} {Length: 413} {RNA1509_38728} {RNA1310_9789} {RNA815_21216}
7.	MligTC455_11632	18	0.38	Mlig455_064774	Neo: - Age: -	CFAP126	0.985	-	-	0.985	-	-	-	Mlig455_064774 {REF} {Length: 2533} {Human: ENSG00000188931, CFAP126, cilia and flagella associated protein 126, [Score=59.7, Expect=5e-10]} {Mouse: ENSMUSG00000026649, Cfap126, cilia and flagella associated protein 126, [Score=63.2, Expect=3e-11]} {RNA1310_44557.2} {RNA815_31853}
8.	MligTC455_38859	28	0.59	Mlig455_071137	Neo: - Age: -		0.98	-	-	0.980	-	-	-	Mlig455_071137 {REF} {Length: 409} {NoTransDecoderORF} {RNA1509_22707} {RNA1310_90313} {RNA815_24119.1}
9.	MligTC455_36770	30	0.63	Mlig455_032449	Neo: - Age: -		0.978	-	-	0.978	-	-	-	Mlig455_032449 {REF} {Length: 657} {NoTransDecoderORF} {RNA1310_93637}
10.	MligTC455_30786	16	0.34	Mlig455_010220	Neo: - Age: Up-Down-Down		0.973	-	-	0.973	-	-	-	Mlig455_010220 {REF} {Length: 3201} {TRANSSPLICED} {RNA1509_34939} {RNA1310_613.1} {RNA815_8156}
11.	MligTC455_37789	16	0.34	Mlig455_002723	Neo: - Age: -		0.972	-	-	0.972	-	-	-	Mlig455_002723 {REF} {Length: 349} {NoTransDecoderORF} {RNA1310_134759}
12.	MligTC455_32263	39	0.82	Mlig455_063832	Neo: - Age: -		0.968	-	-	0.968	-	-	-	Mlig455_063832 {REF} {Length: 3384} {RNA1310_57875} {RNA815_33358}
13.	MligTC455_35694	30	0.63	Mlig455_022388	Neo: - Age: -	WSCD2	0.967	-	-	0.967	-	-	-	Mlig455_022388 {REF} {Length: 1446} {Pfam: WSC domain [PF01822.21, score=47.1]; PAN domain [PF00024.28, score=21.9]; PAN domain [PF14295.8, score=19.3]} {Human: ENSG00000075035, WSCD2, WSC domain containing 2, [Score=51.6, Expect=3e-07]; ENSG00000131650, KREMEN2, kringle containing transmembrane protein 2, [Score=50.4, Expect=7e-07]} {Mouse: ENSMUSG00000063430, Wscd2, WSC domain containing 2, [Score=52.8, Expect=9e-08]; ENSMUSG00000040680, Kremen2, kringle containing transmembrane protein 2, [Score=52.4, Expect=1e-07]} {RNA1310_119799} {RNA815_23500}
14.	MligTC455_01710	41	0.85	Mlig455_013827	Neo: - Age: -		0.965	-	-	0.965	-	-	-	Mlig455_013827 {REF} {Length: 2546} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=29.2]} {RNA1310_100507} {RNA815_49026}
15.	MligTC455_17533	156	3.25	Mlig455_018291	Neo: - Age: -		0.965	-	-	0.965	-	-	-	Mlig455_018291 {REF} {Length: 1866} {TRANSSPLICED} {RNA1509_48476} {RNA1310_24654.1} {RNA815_19410}
16.	MligTC455_34853	23	0.47	Mlig455_045034	Neo: - Age: -		0.965	-	-	0.965	-	-	-	Mlig455_045034 {REF} {Length: 2444} {RNA1310_85929} {RNA815_43650}
17.	MligTC455_38652	14	0.28	Mlig455_053085	Neo: - Age: logFC(26M/2M)=3.457		0.965	-	-	0.965	-	-	-	Mlig455_053085 {REF} {Length: 1326} {RNA1310_36111} {RNA815_20767}
18.	MligTC455_41296	43	0.9	Mlig455_021118	Neo: - Age: -		0.965	-	-	0.965	-	-	-	Mlig455_021118 {REF} {Length: 2049} {RNA1509_59262} {RNA1310_31928} {RNA815_32415}
19.	MligTC455_13740	11	0.23	Mlig455_003266	Neo: - Age: Down-Down-Up	GLUL	0.96	-	-	0.960	-	-	-	Mlig455_003266 {REF} {Length: 2636} {Pfam: Glutamine synthetase, beta-Grasp domain [PF03951.21, score=49.3]; Glutamine synthetase, catalytic domain [PF00120.26, score=46.2]} {Human: ENSG00000135821, GLUL, glutamate-ammonia ligase, [RH, Score=520, Expect=0.0]} {Mouse: ENSMUSG00000026473, Glul, glutamate-ammonia ligase (glutamine synthetase), [RH, Score=523, Expect=0.0]} {Dmel: FBgn0001145, Gs2, Glutamine synthetase 2, [RH, Score=530, Expect=0.0]} {Celegans: WBGene00001604, gln-3, Glutamine synthetase, [RH, Score=531, Expect=0.0]} {Smed: dd_Smed_v6_646_0_1, dd_Smed_v6_646_0_1, [RH, Score=574, Expect=0.0]} {RNA1509_3029, RNA1509_56096} {RNA1310_32301, RNA1509_56096}
20.	MligTC455_45206	17	0.35	Mlig455_058664	Neo: Germline Age: - Regeneration-downregulated R4: -6.232 Regeneration-depleted R4: -6.232		0.96	-	-	0.960	-	-	-	Mlig455_058664 {REF} {Length: 1283} {RNA1509_48085} {RNA1310_40804} {RNA815_27336}
21.	MligTC455_06714	20	0.41	Mlig455_058305	Neo: - Age: -		0.959	-	-	0.959	-	-	-	Mlig455_058305 {REF} {Length: 391} {NoTransDecoderORF}
22.	MligTC455_28992	248	5.17	Mlig455_007574	Neo: - Age: - Region-enriched R3: 5.359/0.00013	SIX1	0.959	-	-	0.959	-	-	-	Mlig455_007574 {REF} {Length: 2756} {Pfam: Transcriptional regulator, SIX1, N-terminal SD domain [PF16878.7, score=146.3]; Homeodomain [PF00046.31, score=56.2]; Homeobox KN domain [PF05920.13, score=49.9]} {Human: ENSG00000126778, SIX1, SIX homeobox 1, [Score=313, Expect=9e-104]; ENSG00000170577, SIX2, SIX homeobox 2, [Score=307, Expect=3e-101]} {Mouse: ENSMUSG00000051367, Six1, sine oculis-related homeobox 1, [Score=313, Expect=5e-104]; ENSMUSG00000024134, Six2, sine oculis-related homeobox 2, [Score=308, Expect=1e-101]} {Dmel: FBgn0003460, so, sine oculis, [Score=303, Expect=3e-98]} {Celegans: WBGene00000454, ceh-33, Homeobox protein ceh-33, [RH, Score=246, Expect=2e-78]} {Smed: dd_Smed_v6_15436_0_1, dd_Smed_v6_15436_0_1, [RH, Score=326, Expect=2e-106]} {RNA1509_55511} {RNA1310_27700, RNA1509_55511} {RNA1509_55511, RNA815_16067}
23.	MligTC455_28596	52	1.08	Mlig455_039629	Neo: - Age: -		0.958	-	-	0.958	-	-	-	Mlig455_039629 {REF} {Length: 1244} {Pfam: Integrase core domain [PF00665.28, score=31.2]} {Smed: dd_Smed_v6_11155_0_2, dd_Smed_v6_11155_0_2, [Score=58.2, Expect=2e-10]} {RNA1509_21400} {RNA1310_576.1} {RNA815_2733.1}
24.	MligTC455_05546	106	2.22	Mlig455_001104	Neo: - Age: -		0.953	-	-	0.953	-	-	-	Mlig455_001104 {REF} {Length: 742} {NoTransDecoderORF} {RNA1509_54498} {RNA1310_15427} {RNA815_19080.1}
25.	MligTC455_17873	15	0.31	Mlig455_009883	Neo: - Age: -		0.952	-	-	0.952	-	-	-	Mlig455_009883 {REF} {Length: 261} {NoTransDecoderORF} {RNA1310_66137}
26.	MligTC455_10000	22	0.45	Mlig455_018215, Mlig455_018222, Mlig455_024893	Neo: - Age: -	NYNRIN	0.95	-	-	0.950	-	-	-	Mlig455_018215 {REF} {Length: 1346} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=50.6]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=115, Expect=9e-28]} {RNA1509_37150} {RNA1310_27350} {RNA815_53271} Mlig455_018222 {REF} {Length: 2972} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=111.2]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=93.6]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=78.7]; Integrase zinc binding domain [PF17921.3, score=48.7]; Integrase core domain [PF00665.28, score=44.0]; H2C2 zinc finger [PF09337.12, score=18.8]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=67.0, Expect=2e-10]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=60.8, Expect=9e-09]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=333, Expect=2e-98]} {RNA1509_24311} {RNA1310_27350} {RNA815_49943} Mlig455_024893 {REF} {Length: 1453} {Smed: dd_Smed_v6_15720_0_1, dd_Smed_v6_15720_0_1, [Score=44.7, Expect=1e-06]} {RNA1310_25709} {RNA815_53271}