Data search
Results for MligTC455_08735
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_08735 | 46 | 0.96 | Mlig455_028395 | Neo: - Age: - Regeneration-upregulated R2: 5.641 Regeneration-enriched R2: 5.641 |
Mlig455_028395 {REF} {Length: 2509} {TRANSSPLICED} {NoTransDecoderORF} |
Cumulative graph for MligTC455_08735
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | 0.452 | 1.265 | 0.99998 | 1.00000 | |
| RegionR2 | -0.344 | 1.265 | 0.99996 | 1.00000 | |
| RegionR3 | -0.134 | 1.265 | 0.99998 | 1.00000 | |
| RegionR4 | 0.329 | 1.265 | 1.00000 | 1.00000 | |
| RegionR5 | -0.022 | 1.265 | 0.99998 | 1.00000 | |
| RegionR6 | -0.127 | 1.265 | 1.00000 | 1.00000 | |
| RegionR7 | -0.092 | 1.265 | 1.00000 | 1.00000 | |
| RegionR8 | -0.061 | 1.265 | 1.00000 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -0.228 | 1.265 | 1.00000 | 1.00000 | |
| RegenerationR2 | 5.641 | 1.265 | 0.00000 | 0.00131 | Specific for R2: 5.641 |
| RegenerationR3 | 4.988 | 1.265 | 0.00382 | 0.11136 | |
| RegenerationR4 | 3.4 | 1.265 | 0.02617 | 0.25983 | |
| RegenerationR5 | 4.19 | 1.265 | 0.00332 | 0.10171 | |
| RegenerationR6 | 3.825 | 1.265 | 0.04512 | 0.26530 | |
| RegenerationBL | 3.506 | 1.265 | 0.10876 | 0.38908 | |
| RegenerationTP | 4.601 | 1.265 | 0.07336 | 0.43369 |
Genes with expression patterns similar to MligTC455_08735
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_08735 | 46 | 0.96 | Mlig455_028395 | Neo: - Age: - Regeneration-upregulated R2: 5.641 Regeneration-enriched R2: 5.641 |
3 | - | - | - | 1.000 | 1.000 | 1.000 | Mlig455_028395 {REF} {Length: 2509} {TRANSSPLICED} {NoTransDecoderORF} | |
| 2. | MligTC455_28754 | 101 | 2.11 | Mlig455_007328 | Neo: - Age: - |
1.678 | - | - | - | - | 0.720 | 0.958 | Mlig455_007328 {REF} {Length: 4271} {Pfam: Protein of unknown function (DUF1104) [PF06518.13, score=22.6]} {RNA1509_29114} {RNA1310_11511, RNA1509_29114} {RNA1509_29114, RNA815_1857} | |
| 3. | MligTC455_24406 | 204 | 4.25 | Mlig455_043947 | Neo: - Age: - Region-specific R2: 3.852 Region-enriched R2: 3.953/0.00003 |
0.978 | - | - | - | - | 0.978 | - | Mlig455_043947 {REF} {Length: 1609} {RNA1509_54091} {RNA1310_68348.1, RNA1509_54091} {RNA1509_54091, RNA815_33570.1} | |
| 4. | MligTC455_24721 | 21 | 0.43 | Mlig455_007749 | Neo: - Age: - |
0.976 | - | - | - | - | 0.976 | - | Mlig455_007749 {REF} {Length: 4358} {TRANSSPLICED} {Celegans: WBGene00022195, Y71H2B.5, [Score=178, Expect=9e-49]} {Smed: dd_Smed_v6_16438_0_1, dd_Smed_v6_16438_0_1, [Score=164, Expect=3e-44]} {RNA1509_7760} {RNA1310_1776} {RNA815_14346} | |
| 5. | MligTC455_36087 | 78 | 1.63 | Mlig455_033950 | Neo: - Age: - |
0.963 | - | - | - | - | - | 0.963 | Mlig455_033950 {REF} {Length: 2975} {RNA1310_107185.1} | |
| 6. | MligTC455_50823 | 13 | 0.28 | Mlig455_052398, Mlig455_052414 | Neo: - Age: - |
0.963 | - | - | - | - | 0.963 | - | Mlig455_052398 {REF} {Length: 582} {NoTransDecoderORF} {RNA1509_43398} {RNA1310_11789.1} {RNA815_4854} Mlig455_052414 {REF} {Length: 288} {NoTransDecoderORF} {RNA1509_43398} {RNA1310_11789.1} {RNA815_4854} |
|
| 7. | MligTC455_27813 | 66 | 1.37 | Mlig455_071014 | Neo: - Age: - |
0.955 | - | - | - | - | - | 0.955 | Mlig455_071014 {REF} {Length: 2810} {RNA1509_55315} {RNA1310_683.1} {RNA815_2170.1} | |
| 8. | MligTC455_11889 | 66 | 1.37 | Mlig455_040154 | Neo: - Age: - |
0.953 | - | - | - | - | - | 0.953 | Mlig455_040154 {REF} {Length: 1508} {RNA1509_18432} {RNA1310_134295} {RNA815_29071} | |
| 9. | MligTC455_43398 | 31 | 0.65 | Mlig455_068365 | Neo: - Age: - |
GRIA1 | 0.952 | - | - | - | - | 0.952 | - | Mlig455_068365 {REF} {Length: 3108} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=77.1]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=40.4]} {Human: ENSG00000155511, GRIA1, glutamate ionotropic receptor AMPA type subunit 1, [Score=77.4, Expect=3e-16]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=75.5, Expect=8e-17]; ENSG00000120251, GRIA2, glutamate ionotropic receptor AMPA type subunit 2, [Score=74.7, Expect=2e-15]} {Mouse: ENSMUSG00000020524, Gria1, glutamate receptor, ionotropic, AMPA1 (alpha 1), [Score=77.0, Expect=2e-16]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=74.7, Expect=1e-15]; ENSMUSG00000033981, Gria2, glutamate receptor, ionotropic, AMPA2 (alpha 2), [Score=74.7, Expect=1e-15]} {Dmel: FBgn0026255, clumsy, [Score=74.7, Expect=9e-16]} {Celegans: WBGene00001617, glr-6, GLutamate Receptor family (AMPA), [Score=80.9, Expect=6e-18]} {Smed: dd_Smed_v6_20242_0_1, dd_Smed_v6_20242_0_1, [Score=74.7, Expect=5e-16]} {RNA1310_18228} {RNA815_23153} |
| 10. | MligTC455_46115 | 57 | 1.18 | Mlig455_048801 | Neo: - Age: Up-Down-Down |
CRY1 | 0.95 | - | - | - | - | 0.950 | - | Mlig455_048801 {REF} {Length: 3004} {TRANSSPLICED} {Pfam: FAD binding domain of DNA photolyase [PF03441.16, score=194.5]; DNA photolyase [PF00875.20, score=139.4]} {Human: ENSG00000008405, CRY1, cryptochrome circadian regulator 1, [RH, Score=466, Expect=3e-157]; ENSG00000121671, CRY2, cryptochrome circadian regulator 2, [RH, Score=452, Expect=5e-152]} {Mouse: ENSMUSG00000020038, Cry1, cryptochrome 1 (photolyase-like), [RH, Score=465, Expect=6e-157]; ENSMUSG00000068742, Cry2, cryptochrome 2 (photolyase-like), [RH, Score=460, Expect=3e-155]} {Dmel: FBgn0016054, phr6-4, (6-4)-photolyase, [Score=361, Expect=1e-117]} {RNA1509_28219} {RNA1310_6554, RNA1509_28219} {RNA1509_28219, RNA815_8162} |
Berezikov Lab - 2020-2021 © ERIBA