M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_45389

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_45389 18 0.37 Mlig455_040503, Mlig455_057939

Neo: -

Age: -

Mlig455_040503 {REF} {Length: 804} {RNA1509_26883} {RNA1310_27896} {RNA815_42909}

Mlig455_057939 {REF} {Length: 1147} {RNA1509_26883} {RNA1310_27896} {RNA815_42909}

Cumulative graph for MligTC455_45389

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.285 0.836 1.00000 1.00000
RegionR2 -1.828 0.836 1.00000 1.00000
RegionR3 0.964 0.836 0.97881 1.00000
RegionR4 2.825 0.836 0.99955 1.00000
RegionR5 1.714 0.836 0.34754 0.69641
RegionR6 -0.824 0.836 0.99008 1.00000
RegionR7 -1.85 0.836 0.99951 1.00000
RegionR8 -0.716 0.836 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.757 0.836 0.99949 1.00000
RegenerationR2 -3.169 0.836 0.28823 0.73109
RegenerationR3 -1.211 0.836 0.44615 0.83039
RegenerationR4 -1.608 0.836 0.95496 1.00000
RegenerationR5 -0.998 0.836 0.41713 0.81006
RegenerationR6 -0.323 0.836 0.53744 0.83139
RegenerationBL -2.037 0.836 0.99987 1.00000
RegenerationTP 0.9 0.836 0.98831 1.00000


Genes with expression patterns similar to MligTC455_45389

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_45389 18 0.37 Mlig455_040503, Mlig455_057939

Neo: -

Age: -

 3 - - 1.000 - 1.000 1.000

Mlig455_040503 {REF} {Length: 804} {RNA1509_26883} {RNA1310_27896} {RNA815_42909}

Mlig455_057939 {REF} {Length: 1147} {RNA1509_26883} {RNA1310_27896} {RNA815_42909}
2. MligTC455_28650 110 2.28 Mlig455_048259

Neo: -

Age: Down-Down-Up

 RNF213 1.678 - - 0.976 - 0.702 - Mlig455_048259 {REF} {Length: 11132} {Pfam: ATPase family associated with various cellular activities (AAA) [PF00004.31, score=26.0]; AAA domain (dynein-related subfamily) [PF07728.16, score=23.9]} {Human: ENSG00000173821, RNF213, ring finger protein 213, [Score=342, Expect=3e-93]} {Mouse: ENSMUSG00000070327, Rnf213, ring finger protein 213, [Score=337, Expect=6e-92]} {RNA1509_34013} {RNA1310_20549} {RNA815_15}
3. MligTC455_10597 50 1.03 Mlig455_000567

Neo: -

Age: -

 GRIK3 0.98 - - 0.980 - - - Mlig455_000567 {REF} {Length: 3419} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=70.9]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=51.0]; Ligand-gated ion channel [PF00060.28, score=43.2]} {Human: ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=148, Expect=5e-36]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=145, Expect=3e-35]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=141, Expect=8e-34]} {Mouse: ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=146, Expect=1e-35]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=145, Expect=2e-35]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=144, Expect=8e-35]} {Dmel: FBgn0039916, Ekar, Eye-enriched kainate receptor, [Score=131, Expect=4e-31]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [Score=134, Expect=4e-32]} {Smed: dd_Smed_v6_14655_0_1, dd_Smed_v6_14655_0_1, [Score=148, Expect=1e-36]} {RNA1509_59839} {RNA1310_4586, RNA1509_59839} {RNA1509_59839, RNA815_2154.1}
4. MligTC455_10598 46 0.97 Mlig455_030367

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.975

 GRIK3 0.98 - - 0.980 - - - Mlig455_030367 {REF} {Length: 3072} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=74.5]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=38.8]} {Human: ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=97.4, Expect=2e-20]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=93.2, Expect=5e-19]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=92.8, Expect=6e-19]} {Mouse: ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=97.1, Expect=2e-20]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=95.9, Expect=6e-20]} {Dmel: FBgn0039916, Ekar, Eye-enriched kainate receptor, [Score=90.1, Expect=2e-18]} {Celegans: WBGene00001613, glr-2, Glutamate receptor 2, [Score=88.2, Expect=8e-18]} {Smed: dd_Smed_v6_14655_0_1, dd_Smed_v6_14655_0_1, [Score=94.0, Expect=9e-20]} {RNA1509_59839} {RNA1310_4586} {RNA815_2154.1}
5. MligTC455_10600 44 0.91 Mlig455_000569

Neo: -

Age: -

 GRIK3 0.98 - - 0.980 - - - Mlig455_000569 {REF} {Length: 2818} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=74.0]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=55.9]; Ligand-gated ion channel [PF00060.28, score=42.5]} {Human: ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=146, Expect=2e-35]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=143, Expect=2e-34]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=141, Expect=5e-34]; ENSG00000105737, GRIK5, glutamate ionotropic receptor kainate type subunit 5, [Score=139, Expect=3e-33]} {Mouse: ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=145, Expect=3e-35]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=144, Expect=6e-35]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=141, Expect=6e-34]; ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=140, Expect=2e-33]; ENSMUSG00000003378, Grik5, glutamate receptor, ionotropic, kainate 5 (gamma 2), [Score=139, Expect=4e-33]} {Dmel: FBgn0026255, clumsy, [Score=132, Expect=4e-31]} {Celegans: WBGene00001613, glr-2, Glutamate receptor 2, [Score=135, Expect=2e-32]} {Smed: dd_Smed_v6_14655_0_1, dd_Smed_v6_14655_0_1, [Score=155, Expect=6e-39]} {RNA1509_59839} {RNA1310_4586} {RNA815_2154.1}
6. MligTC455_27922 448 9.33 Mlig455_063289

Neo: -

Age: logFC(26M/2M)=0.662

Region-enriched R5: 1.115/0.00885

 ACP7 0.979 - - - - 0.979 - Mlig455_063289 {REF} {Length: 2304} {Pfam: Calcineurin-like phosphoesterase [PF00149.30, score=89.4]; Iron/zinc purple acid phosphatase-like protein C [PF14008.8, score=68.8]; Purple acid Phosphatase, N-terminal domain [PF16656.7, score=57.1]} {Human: ENSG00000183760, ACP7, acid phosphatase 7, tartrate resistant (putative), [RH, Score=422, Expect=1e-144]} {Mouse: ENSMUSG00000037469, Acp7, acid phosphatase 7, tartrate resistant, [Score=426, Expect=9e-146]} {Dmel: FBgn0030245, CG1637, [RH, Score=427, Expect=7e-147]} {Celegans: WBGene00219316, F21A3.11, Purple acid phosphatase, [Score=358, Expect=2e-119]} {Smed: dd_Smed_v6_2643_0_1, dd_Smed_v6_2643_0_1, [RH, Score=394, Expect=5e-134]} {RNA1509_17577} {RNA1310_12439, RNA1509_17577} {RNA1509_17577, RNA815_4397}
7. MligTC455_50286 107 2.22 Mlig455_056616

Neo: -

Age: -

 LENG1 0.969 - - 0.969 - - - Mlig455_056616 {REF} {Length: 2994} {TRANSSPLICED} {Pfam: N-terminal domain of CBF1 interacting co-repressor CIR [PF10197.11, score=33.9]} {Human: ENSG00000105617, LENG1, leukocyte receptor cluster member 1, [Score=86.3, Expect=2e-19]} {Mouse: ENSMUSG00000078813, Leng1, leukocyte receptor cluster (LRC) member 1, [Score=55.8, Expect=8e-09]} {Dmel: FBgn0037809, CG12818, [RH, Score=82.0, Expect=5e-18]} {Smed: dd_Smed_v6_7939_0_1, dd_Smed_v6_7939_0_1, [Score=62.4, Expect=2e-11]} {RNA1509_27956} {RNA1310_27973} {RNA815_32915}
8. MligTC455_49177 223 4.65 Mlig455_001811, Mlig455_001838, Mlig455_062230, Mlig455_062238

Neo: -

Age: -

 0.962 - - 0.962 - - -

Mlig455_001811 {REF} {Length: 1258} {RNA1310_20936} {RNA815_9080}

Mlig455_001838 {REF} {Length: 1782} {RNA1310_20936} {RNA815_9080}

Mlig455_062230 {REF} {Length: 1082} {RNA1310_20936} {RNA815_9080}

Mlig455_062238 {REF} {Length: 713} {RNA1310_20936} {RNA815_9080}
9. MligTC455_27545 130 2.71 Mlig455_042355

Neo: -

Age: logFC(26M/2M)=-0.989

 KREMEN1 0.961 - - - - - 0.961 Mlig455_042355 {REF} {Length: 5033} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=63.6]; Ankyrin repeats (many copies) [PF13637.8, score=52.3]; WSC domain [PF01822.21, score=42.5]; Ankyrin repeat [PF13606.8, score=38.6]; Ankyrin repeat [PF00023.32, score=30.8]; Ankyrin repeats (many copies) [PF13857.8, score=26.9]} {Human: ENSG00000183762, KREMEN1, kringle containing transmembrane protein 1, [Score=50.1, Expect=3e-07]} {Mouse: ENSMUSG00000020393, Kremen1, kringle containing transmembrane protein 1, [Score=52.8, Expect=6e-08]} {RNA1509_48795} {RNA1310_1739} {RNA815_2547.1}
10. MligTC455_25129 104 2.17 Mlig455_009262

Neo: Irradiation

Age: -

 GPR75-ASB3 0.96 - - - - - 0.960 Mlig455_009262 {REF} {Length: 3797} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=114.7]; Ankyrin repeats (many copies) [PF13637.8, score=89.9]; Ankyrin repeats (many copies) [PF13857.8, score=83.0]; Ankyrin repeat [PF13606.8, score=78.8]; Ankyrin repeat [PF00023.32, score=70.5]; SOCS box [PF07525.18, score=35.8]} {Human: ENSG00000270898, GPR75-ASB3, GPR75-ASB3 readthrough, [Score=105, Expect=2e-23]; ENSG00000115239, ASB3, ankyrin repeat and SOCS box containing 3, [Score=105, Expect=1e-23]} {Mouse: ENSMUSG00000020305, Asb3, ankyrin repeat and SOCS box-containing 3, [Score=99.0, Expect=9e-22]} {Dmel: FBgn0011747, Ank, Ankyrin, [Score=85.1, Expect=4e-17]} {Celegans: WBGene00019782, M60.7, [RH, Score=133, Expect=4e-34]} {Smed: dd_Smed_v6_2072_0_8, dd_Smed_v6_2072_0_8, [Score=90.9, Expect=4e-19]} {RNA1509_11976} {RNA1310_19298} {RNA815_7424.1}
11. MligTC455_47075 126 2.63 Mlig455_033745

Neo: -

Age: Up-Up-Down

 PCDH1 0.957 - - 0.957 - - - Mlig455_033745 {REF} {Length: 4991} {Pfam: Cadherin domain [PF00028.19, score=181.7]; Cadherin-like [PF16184.7, score=27.8]; Cadherin-like [PF08266.14, score=24.6]} {Human: ENSG00000156453, PCDH1, protocadherin 1, [Score=203, Expect=2e-52]} {Mouse: ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=204, Expect=2e-53]} {Dmel: FBgn0284247, ds, dachsous, [Score=162, Expect=9e-40]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=149, Expect=4e-36]} {Smed: dd_Smed_v6_21207_0_1, dd_Smed_v6_21207_0_1, [Score=273, Expect=4e-76]} {RNA1509_26484} {RNA1310_13116, RNA1509_26484} {RNA1509_26484, RNA815_12525}
12. MligTC455_32016 177 3.69 Mlig455_031532

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.249

 DNAJC7 0.955 - - 0.955 - - - Mlig455_031532 {REF} {Length: 4248} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=47.3]; Tetratricopeptide repeat [PF07719.19, score=39.4]; Tetratricopeptide repeat [PF00515.30, score=27.6]; Tetratricopeptide repeat [PF13371.8, score=27.4]; DnaJ domain [PF00226.33, score=26.8]; UBA/TS-N domain [PF00627.33, score=23.7]; Occluded RNA-recognition motif [PF16842.7, score=19.7]; Tetratricopeptide repeat [PF13428.8, score=19.4]} {Human: ENSG00000168259, DNAJC7, DnaJ heat shock protein family (Hsp40) member C7, [Score=66.2, Expect=8e-11]; ENSG00000011485, PPP5C, protein phosphatase 5 catalytic subunit, [Score=63.9, Expect=5e-10]} {Mouse: ENSMUSG00000014195, Dnajc7, DnaJ heat shock protein family (Hsp40) member C7, [Score=66.6, Expect=2e-12]; ENSMUSG00000003099, Ppp5c, protein phosphatase 5, catalytic subunit, [Score=65.1, Expect=1e-10]} {Dmel: FBgn0052423, shep, alan shepard, [Score=53.9, Expect=3e-07]} {Celegans: WBGene00019893, sgt-1, Small Glutamine-rich Tetratrico repeat protein, [Score=49.7, Expect=4e-06]} {Smed: dd_Smed_v6_1462_0_1, dd_Smed_v6_1462_0_1, [Score=52.4, Expect=4e-07]} {RNA1509_7162} {RNA1310_9351.1, RNA1509_7162} {RNA1509_7162, RNA815_11968}
13. MligTC455_02060 78 1.63 Mlig455_009570

Neo: -

Age: logFC(26M/2M)=-0.292

 PCM1 0.953 - - 0.953 - - - Mlig455_009570 {REF} {Length: 2628} {Pfam: Pericentriolar material 1 C terminus [PF15717.7, score=22.3]} {Human: ENSG00000078674, PCM1, pericentriolar material 1, [Score=51.6, Expect=3e-06]} {Mouse: ENSMUSG00000031592, Pcm1, pericentriolar material 1, [Score=51.2, Expect=2e-06]} {RNA1509_46460} {RNA1310_12986} {RNA815_6776}
14. MligTC455_29115 1506 31.37 Mlig455_040502, Mlig455_040519

Neo: Irradiation

Age: logFC(26M/2M)=0.365

Region-specific R5: 3.179

Region-enriched R5: 2.708/0.00000

 ZNF608, ZNF609 0.951 - - - - 0.951 -

Mlig455_040502 {REF} {Length: 4871} {Human: ENSG00000180357, ZNF609, zinc finger protein 609, [RH, Score=120, Expect=2e-27]; ENSG00000168916, ZNF608, zinc finger protein 608, [RH, Score=118, Expect=1e-26]} {Mouse: ENSMUSG00000052713, Zfp608, zinc finger protein 608, [RH, Score=119, Expect=4e-27]} {Dmel: FBgn0285917, sbb, scribbler, [RH, Score=115, Expect=7e-26]} {Smed: dd_Smed_v6_9549_0_1, dd_Smed_v6_9549_0_1, [Score=102, Expect=4e-23]} {RNA1509_6603} {RNA1310_4038.2} {RNA815_6448}

Mlig455_040519 {REF} {Length: 3263} {Human: ENSG00000168916, ZNF608, zinc finger protein 608, [RH, Score=112, Expect=4e-25]; ENSG00000180357, ZNF609, zinc finger protein 609, [RH, Score=110, Expect=3e-24]} {Mouse: ENSMUSG00000052713, Zfp608, zinc finger protein 608, [RH, Score=117, Expect=1e-26]} {Dmel: FBgn0285917, sbb, scribbler, [RH, Score=114, Expect=1e-25]} {Smed: dd_Smed_v6_9549_0_1, dd_Smed_v6_9549_0_1, [Score=101, Expect=3e-23]} {RNA1509_6603} {RNA1310_4038.2} {RNA815_6448}
15. MligTC455_52953 200 4.16 Mlig455_020418

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_020418 {REF} {Length: 532} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_57020} {RNA1310_45915} {RNA815_51517}
16. MligTC455_18433 17 0.36 Mlig455_054750

Neo: -

Age: -

Region-enriched R5: 3.611/0.04620

 0.95 - - 0.950 - - - Mlig455_054750 {REF} {Length: 1418} {RNA1509_53910} {RNA1310_24056} {RNA815_30226}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA