M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_11059

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_11059 54 1.13 Mlig455_034683

Neo: -

Age: -

 Mlig455_034683 {REF} {Length: 1017} {NoTransDecoderORF} {RNA1509_16318} {RNA1310_94190} {RNA815_40826}

Cumulative graph for MligTC455_11059

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.736 1.362 0.99970 1.00000
RegionR2 1.891 1.362 0.21664 0.58369
RegionR3 1.465 1.362 0.27670 0.82038
RegionR4 0.842 1.362 0.49984 0.82663
RegionR5 1.787 1.362 0.13144 0.36876
RegionR6 0.292 1.362 0.72679 1.00000
RegionR7 0.451 1.362 0.71403 1.00000
RegionR8 -2.992 1.362 0.99960 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.089 1.362 0.99999 1.00000
RegenerationR2 0.146 1.362 0.86297 1.00000
RegenerationR3 0.629 1.362 0.53670 0.87542
RegenerationR4 -0.11 1.362 0.92455 1.00000
RegenerationR5 0.329 1.362 0.70725 0.95444
RegenerationR6 1.191 1.362 0.34984 0.69489
RegenerationBL 3.037 1.362 0.06820 0.30370
RegenerationTP 3.244 1.362 0.13688 0.55449


Genes with expression patterns similar to MligTC455_11059

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_11059 54 1.13 Mlig455_034683

Neo: -

Age: -

 4 - - 1.000 1.000 1.000 1.000 Mlig455_034683 {REF} {Length: 1017} {NoTransDecoderORF} {RNA1509_16318} {RNA1310_94190} {RNA815_40826}
2. MligTC455_22796 48 1.01 Mlig455_066731, Mlig455_066745

Neo: -

Age: Up-Down-Up

Region-enriched R5: 5.599/0.00476
Region-enriched R4: 3.896/0.00273

Regeneration-upregulated BL: 6.528

Regeneration-enriched BL: 6.528

 ANKRD23 1.721 - - 0.978 0.743 - -

Mlig455_066731 {REF} {Length: 575} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=70.8]; Ankyrin repeats (many copies) [PF13637.8, score=55.0]; Ankyrin repeats (many copies) [PF13857.8, score=43.9]; Ankyrin repeat [PF00023.32, score=42.1]; Ankyrin repeat [PF13606.8, score=32.2]} {Human: ENSG00000163126, ANKRD23, ankyrin repeat domain 23, [Score=65.9, Expect=1e-12]; ENSG00000085185, BCORL1, BCL6 corepressor like 1, [Score=64.3, Expect=9e-12]; ENSG00000183337, BCOR, BCL6 corepressor, [Score=63.9, Expect=7e-12]; ENSG00000064490, RFXANK, regulatory factor X associated ankyrin containing protein, [Score=63.9, Expect=5e-12]; ENSG00000170921, TANC2, tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2, [Score=63.9, Expect=2e-11]; ENSG00000101752, MIB1, mindbomb E3 ubiquitin protein ligase 1, [Score=62.8, Expect=3e-11]; ENSG00000029534, ANK1, ankyrin 1, [Score=62.8, Expect=4e-11]} {Mouse: ENSMUSG00000053580, Tanc2, tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2, [Score=65.5, Expect=3e-12]; ENSMUSG00000036959, Bcorl1, BCL6 co-repressor-like 1, [Score=63.9, Expect=9e-12]; ENSMUSG00000036333, Kidins220, kinase D-interacting substrate 220, [Score=63.9, Expect=1e-11]; ENSMUSG00000024294, Mib1, mindbomb E3 ubiquitin protein ligase 1, [Score=63.2, Expect=2e-11]} {Dmel: FBgn0261554, CG42672, [Score=65.9, Expect=2e-12]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=56.6, Expect=1e-09]} {Smed: dd_Smed_v6_2072_0_20, dd_Smed_v6_2072_0_20, [Score=63.2, Expect=7e-12]} {RNA1509_15876} {RNA1310_604.1} {RNA815_475}

Mlig455_066745 {REF} {Length: 575} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=70.8]; Ankyrin repeats (many copies) [PF13637.8, score=55.0]; Ankyrin repeats (many copies) [PF13857.8, score=43.9]; Ankyrin repeat [PF00023.32, score=42.1]; Ankyrin repeat [PF13606.8, score=32.2]} {Human: ENSG00000163126, ANKRD23, ankyrin repeat domain 23, [Score=65.9, Expect=1e-12]; ENSG00000085185, BCORL1, BCL6 corepressor like 1, [Score=64.3, Expect=9e-12]; ENSG00000183337, BCOR, BCL6 corepressor, [Score=63.9, Expect=7e-12]; ENSG00000064490, RFXANK, regulatory factor X associated ankyrin containing protein, [Score=63.9, Expect=5e-12]; ENSG00000170921, TANC2, tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2, [Score=63.9, Expect=2e-11]; ENSG00000101752, MIB1, mindbomb E3 ubiquitin protein ligase 1, [Score=62.8, Expect=3e-11]; ENSG00000029534, ANK1, ankyrin 1, [Score=62.8, Expect=4e-11]} {Mouse: ENSMUSG00000053580, Tanc2, tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2, [Score=65.5, Expect=3e-12]; ENSMUSG00000036959, Bcorl1, BCL6 co-repressor-like 1, [Score=63.9, Expect=9e-12]; ENSMUSG00000036333, Kidins220, kinase D-interacting substrate 220, [Score=63.9, Expect=1e-11]; ENSMUSG00000024294, Mib1, mindbomb E3 ubiquitin protein ligase 1, [Score=63.2, Expect=2e-11]} {Dmel: FBgn0261554, CG42672, [Score=65.9, Expect=2e-12]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=56.6, Expect=1e-09]} {Smed: dd_Smed_v6_2072_0_20, dd_Smed_v6_2072_0_20, [Score=63.2, Expect=7e-12]} {RNA1509_15876} {RNA1310_604.1} {RNA815_475}
3. MligTC455_50655 31 0.64 Mlig455_066290

Neo: -

Age: -

Region-enriched R4: 3.890/0.04771

 1.698 - - 0.748 - - 0.950 Mlig455_066290 {REF} {Length: 1602} {NoTransDecoderORF} {RNA1509_22341} {RNA1310_75156} {RNA815_42813}
4. MligTC455_31700 61 1.27 Mlig455_029534, Mlig455_043006, Mlig455_043044, Mlig455_043060

Neo: Germline

Age: Up-Down-Down

 0.977 - - 0.977 - - -

Mlig455_029534 {REF} {Length: 233} {NoTransDecoderORF} {RNA1310_141162}

Mlig455_043006 {REF} {Length: 2891} {Smed: dd_Smed_v6_24671_0_1, dd_Smed_v6_24671_0_1, [Score=71.6, Expect=7e-14]} {RNA1509_18736} {RNA1310_33325} {RNA815_43331}

Mlig455_043044 {REF} {Length: 2804} {Smed: dd_Smed_v6_24671_0_1, dd_Smed_v6_24671_0_1, [Score=70.1, Expect=2e-13]} {RNA1509_18736} {RNA1310_33325} {RNA815_43331}

Mlig455_043060 {REF} {Length: 3069} {Smed: dd_Smed_v6_24671_0_1, dd_Smed_v6_24671_0_1, [Score=71.2, Expect=8e-14]} {RNA1509_18736} {RNA1310_33325} {RNA815_43331}
5. MligTC455_52502 67 1.4 Mlig455_006483

Neo: -

Age: -

 0.977 - - - - - 0.977 Mlig455_006483 {REF} {Length: 1692} {RNA1509_9393} {RNA1310_41685} {RNA815_34926}
6. MligTC455_08445 29 0.61 Mlig455_006264

Neo: -

Age: -

Region-enriched R5: 3.548/0.04688

 0.971 - - 0.971 - - - Mlig455_006264 {REF} {Length: 1686} {RNA1310_16425} {RNA815_48971}
7. MligTC455_17960 44 0.92 Mlig455_021047

Neo: -

Age: -

Region-enriched R2: 4.515/0.04131
Region-enriched R4: 3.266/0.03072

 0.97 - - - 0.970 - - Mlig455_021047 {REF} {Length: 2114} {Pfam: SH3 domain [PF17902.3, score=25.9]; Plectin repeat [PF00681.22, score=23.8]} {Smed: dd_Smed_v6_16329_0_1, dd_Smed_v6_16329_0_1, [Score=56.6, Expect=2e-08]} {RNA1509_53557} {RNA1310_11354} {RNA815_18566}
8. MligTC455_11373 41 0.85 Mlig455_041253

Neo: -

Age: -

Region-enriched R4: 4.164/0.01537

 0.964 - - 0.964 - - - Mlig455_041253 {REF} {Length: 979} {RNA1310_44893} {RNA815_18400}
9. MligTC455_20215 53 1.1 Mlig455_034733

Neo: -

Age: -

 0.964 - - - - - 0.964 Mlig455_034733 {REF} {Length: 1330} {NoTransDecoderORF} {RNA1310_91476} {RNA815_62025}
10. MligTC455_39425 108 2.25 Mlig455_056747

Neo: -

Age: Up-Down-Down

Region-enriched R2: 3.524/0.03122

 TFPI 0.964 - - 0.964 - - - Mlig455_056747 {REF} {Length: 6396} {Pfam: Kunitz/Bovine pancreatic trypsin inhibitor domain [PF00014.25, score=255.9]; Immunoglobulin domain [PF13927.8, score=72.2]; Immunoglobulin domain [PF13895.8, score=60.2]; Immunoglobulin I-set domain [PF07679.18, score=48.8]; Immunoglobulin domain [PF00047.27, score=44.3]; Immunoglobulin V-set domain [PF07686.19, score=37.1]; Antistasin family [PF02822.16, score=30.1]} {Human: ENSG00000003436, TFPI, tissue factor pathway inhibitor, [Score=90.5, Expect=7e-19]} {Mouse: ENSMUSG00000027082, Tfpi, tissue factor pathway inhibitor, [RH, Score=93.6, Expect=5e-20]} {Dmel: FBgn0003137, Ppn, Papilin, [RH, Score=153, Expect=9e-37]} {Celegans: WBGene00003242, mig-6, Papilin, [RH, Score=125, Expect=2e-28]} {Smed: dd_Smed_v6_8833_0_1, dd_Smed_v6_8833_0_1, [RH, Score=160, Expect=3e-39]} {RNA1509_1956} {RNA1310_1956} {RNA815_29941}
11. MligTC455_18080 42 0.87 Mlig455_000856, Mlig455_022733, Mlig455_023592, Mlig455_046633, Mlig455_065232

Neo: -

Age: -

Region-enriched R4: 7.913/0.00453

 0.961 - - 0.961 - - -

Mlig455_000856 {REF} {Length: 943} {NoTransDecoderORF} {RNA1310_100982} {RNA815_59781}

Mlig455_022733 {REF} {Length: 1176} {NoTransDecoderORF} {RNA1310_79060} {RNA815_46098}

Mlig455_023592 {REF} {Length: 894} {NoTransDecoderORF} {RNA1310_100982} {RNA815_46098}

Mlig455_046633 {REF} {Length: 743} {Pfam: Dynein light chain type 1 [PF01221.20, score=25.7]} {RNA1310_101340} {RNA815_38271}

Mlig455_065232 {REF} {Length: 1039} {NoTransDecoderORF} {RNA1310_79060} {RNA815_46098}
12. MligTC455_23923 82 1.7 Mlig455_001767

Neo: -

Age: Up-Down-Down

Region-enriched R7: 2.762/0.03987

 0.961 - - - - 0.961 - Mlig455_001767 {REF} {Length: 1714} {NoTransDecoderORF} {RNA1509_37800} {RNA1310_88352} {RNA815_44560}
13. MligTC455_49345 298 6.22 Mlig455_039437, Mlig455_039482

Neo: -

Age: Up-Down-Down

Region-enriched R4: 2.924/0.03227

 GFI1 0.96 - - - 0.960 - -

Mlig455_039437 {REF} {Length: 3270} {Pfam: Zinc-finger double domain [PF13465.8, score=104.5]; Zinc finger, C2H2 type [PF00096.28, score=98.0]; C2H2-type zinc finger [PF13894.8, score=58.0]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=43.7]; C2H2-type zinc finger [PF13912.8, score=37.0]; Zinc-finger of C2H2 type [PF12874.9, score=19.6]; LYAR-type C2HC zinc finger [PF08790.13, score=19.3]} {Human: ENSG00000162676, GFI1, growth factor independent 1 transcriptional repressor, [RH, Score=312, Expect=2e-100]; ENSG00000165702, GFI1B, growth factor independent 1B transcriptional repressor, [RH, Score=300, Expect=5e-97]} {Mouse: ENSMUSG00000029275, Gfi1, growth factor independent 1 transcription repressor, [RH, Score=314, Expect=2e-100]; ENSMUSG00000026815, Gfi1b, growth factor independent 1B, [RH, Score=303, Expect=4e-98]} {Dmel: FBgn0051632, sens-2, senseless-2, [RH, Score=313, Expect=3e-97]} {Celegans: WBGene00003909, pag-3, Zinc finger protein PAG-3, [RH, Score=239, Expect=1e-73]} {Smed: dd_Smed_v6_14824_0_1, dd_Smed_v6_14824_0_1, [RH, Score=290, Expect=5e-93]} {RNA1509_50869} {RNA1310_15988} {RNA815_35565}

Mlig455_039482 {REF} {Length: 3266} {Pfam: Zinc-finger double domain [PF13465.8, score=104.5]; Zinc finger, C2H2 type [PF00096.28, score=98.0]; C2H2-type zinc finger [PF13894.8, score=58.0]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=43.7]; C2H2-type zinc finger [PF13912.8, score=37.0]; Zinc-finger of C2H2 type [PF12874.9, score=19.6]; LYAR-type C2HC zinc finger [PF08790.13, score=19.3]} {Human: ENSG00000162676, GFI1, growth factor independent 1 transcriptional repressor, [RH, Score=313, Expect=2e-100]; ENSG00000165702, GFI1B, growth factor independent 1B transcriptional repressor, [RH, Score=300, Expect=4e-97]} {Mouse: ENSMUSG00000029275, Gfi1, growth factor independent 1 transcription repressor, [RH, Score=314, Expect=2e-100]; ENSMUSG00000026815, Gfi1b, growth factor independent 1B, [RH, Score=303, Expect=4e-98]} {Dmel: FBgn0051632, sens-2, senseless-2, [RH, Score=313, Expect=3e-97]} {Celegans: WBGene00003909, pag-3, Zinc finger protein PAG-3, [RH, Score=239, Expect=1e-73]} {Smed: dd_Smed_v6_14824_0_1, dd_Smed_v6_14824_0_1, [RH, Score=290, Expect=5e-93]} {RNA1509_50869} {RNA1310_15988} {RNA815_35565}
14. MligTC455_29890 8 0.17 Mlig455_052117

Neo: -

Age: logFC(26M/2M)=-0.339

 ANKRD52 0.959 - - - - 0.959 - Mlig455_052117 {REF} {Length: 5723} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=99.4]; Ankyrin repeats (many copies) [PF13637.8, score=62.6]; Ankyrin repeat [PF13606.8, score=53.0]; Ankyrin repeats (many copies) [PF13857.8, score=48.5]; Ankyrin repeat [PF00023.32, score=43.3]; Mab-21 protein [PF03281.16, score=39.5]} {Human: ENSG00000139645, ANKRD52, ankyrin repeat domain 52, [Score=68.9, Expect=8e-11]; ENSG00000151458, ANKRD50, ankyrin repeat domain 50, [Score=66.2, Expect=7e-10]; ENSG00000029534, ANK1, ankyrin 1, [Score=65.5, Expect=1e-09]} {Mouse: ENSMUSG00000078487, Ankrd65, ankyrin repeat domain 65, [Score=67.8, Expect=5e-11]; ENSMUSG00000044864, Ankrd50, ankyrin repeat domain 50, [Score=67.0, Expect=3e-10]} {Dmel: FBgn0043884, mask, multiple ankyrin repeats single KH domain, [Score=67.0, Expect=2e-10]} {Celegans: WBGene00011240, R11A8.7, Ankyrin repeat and KH domain-containing protein R11A8.7, [Score=56.2, Expect=2e-07]} {Smed: dd_Smed_v6_7952_0_2, dd_Smed_v6_7952_0_2, [Score=60.8, Expect=8e-09]} {RNA1509_44391} {RNA1310_3771.1} {RNA815_6576.1}
15. MligTC455_30506 16 0.33 Mlig455_055246

Neo: -

Age: logFC(26M/2M)=-0.628

 CHRNA3 0.957 - - - - - 0.957 Mlig455_055246 {REF} {Length: 2612} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=199.4]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=164.9]} {Human: ENSG00000080644, CHRNA3, cholinergic receptor nicotinic alpha 3 subunit, [Score=338, Expect=7e-110]; ENSG00000147434, CHRNA6, cholinergic receptor nicotinic alpha 6 subunit, [Score=330, Expect=7e-107]} {Mouse: ENSMUSG00000031491, Chrna6, cholinergic receptor, nicotinic, alpha polypeptide 6, [Score=347, Expect=2e-113]; ENSMUSG00000032303, Chrna3, cholinergic receptor, nicotinic, alpha polypeptide 3, [Score=334, Expect=1e-108]} {Dmel: FBgn0266347, nAChRalpha4, nicotinic Acetylcholine Receptor alpha4, [Score=394, Expect=8e-132]} {Celegans: WBGene00006797, unc-63, Acetylcholine receptor subunit alpha-type unc-63, [Score=336, Expect=2e-109]} {Smed: dd_Smed_v6_9799_0_1, dd_Smed_v6_9799_0_1, [Score=475, Expect=5e-164]} {RNA1509_13864} {RNA1310_13542, RNA1509_13864} {RNA1509_13864, RNA815_5136}
16. MligTC455_31537 21 0.44 Mlig455_029620, Mlig455_070637

Neo: -

Age: -

 GVQW3 0.956 - - - - 0.956 -

Mlig455_029620 {REF} {Length: 1393} {RNA1509_8096} {RNA1310_1771} {RNA815_801}

Mlig455_070637 {REF} {Length: 894} {Human: ENSG00000179240, GVQW3, GVQW motif containing 3, [Score=48.5, Expect=9e-07]} {RNA1509_8096} {RNA1310_3502} {RNA815_801}
17. MligTC455_50990 120 2.5 Mlig455_062680

Neo: -

Age: -

 0.953 - - 0.953 - - - Mlig455_062680 {REF} {Length: 1289} {RNA1509_19235} {RNA1310_6372.2} {RNA815_3528}
18. MligTC455_39183 136 2.84 Mlig455_045539

Neo: -

Age: -

 0.95 - - - 0.950 - - Mlig455_045539 {REF} {Length: 5635} {Pfam: Poxvirus A32 protein [PF04665.14, score=27.0]} {Celegans: WBGene00021498, Y40C7B.1, [Score=51.6, Expect=2e-07]} {RNA1509_5514} {RNA1310_683.1} {RNA815_1542.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA