TomoSeq data search

Data search

Results for MligTC455_13354

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_13354

12

0.26

Mlig455_019393

Neo: -

Age: -

GRIK4

Mlig455_019393 {REF} {Length: 2465} {Pfam: Ligand-gated ion channel [PF00060.28, score=92.8]} {Human: ENSG00000149403, GRIK4, glutamate ionotropic receptor kainate type subunit 4, [Score=101, Expect=4e-23]} {Mouse: ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=99.4, Expect=1e-22]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=95.1, Expect=3e-21]} {Dmel: FBgn0038837, CG3822, [Score=103, Expect=3e-24]} {Celegans: WBGene00001612, glr-1, Glutamate receptor 1, [Score=89.0, Expect=2e-19]} {Smed: dd_Smed_v6_31078_0_1, dd_Smed_v6_31078_0_1, [Score=209, Expect=4e-65]} {RNA1509_10728} {RNA1310_13608.1} {RNA815_15283}

Cumulative graph for MligTC455_13354

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-	-	-	-
RegionR2	-	-	-	-
RegionR3	-	-	-	-
RegionR4	-	-	-	-
RegionR5	-	-	-	-
RegionR6	-	-	-	-
RegionR7	-	-	-	-
RegionR8	-	-	-	-

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-	-	-	-
RegenerationR2	-	-	-	-
RegenerationR3	-	-	-	-
RegenerationR4	-	-	-	-
RegenerationR5	-	-	-	-
RegenerationR6	-	-	-	-
RegenerationBL	-	-	-	-
RegenerationTP	-	-	-	-

Genes with expression patterns similar to MligTC455_13354

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_13354	12	0.26	Mlig455_019393	Neo: - Age: -	GRIK4	1	-	-	-	-	1.000	-	Mlig455_019393 {REF} {Length: 2465} {Pfam: Ligand-gated ion channel [PF00060.28, score=92.8]} {Human: ENSG00000149403, GRIK4, glutamate ionotropic receptor kainate type subunit 4, [Score=101, Expect=4e-23]} {Mouse: ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=99.4, Expect=1e-22]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=95.1, Expect=3e-21]} {Dmel: FBgn0038837, CG3822, [Score=103, Expect=3e-24]} {Celegans: WBGene00001612, glr-1, Glutamate receptor 1, [Score=89.0, Expect=2e-19]} {Smed: dd_Smed_v6_31078_0_1, dd_Smed_v6_31078_0_1, [Score=209, Expect=4e-65]} {RNA1509_10728} {RNA1310_13608.1} {RNA815_15283}
2.	MligTC455_56068	7	0.15	Mlig455_050265	Neo: - Age: -		0.988	-	-	-	-	0.988	-	Mlig455_050265 {REF} {Length: 408} {NoTransDecoderORF} {RNA1509_8112} {RNA1310_65693} {RNA815_1829.1}
3.	MligTC455_32969	4	0.09	Mlig455_031795	Neo: - Age: -		0.986	-	-	-	-	0.986	-	Mlig455_031795 {REF} {Length: 1884}
4.	MligTC455_23653	43	0.89	Mlig455_017999	Neo: Irradiation Age: Down-Down-Down	SPDYC	0.979	-	-	-	-	0.979	-	Mlig455_017999 {REF} {Length: 1728} {TRANSSPLICED} {Pfam: Cell cycle regulatory protein [PF11357.10, score=101.1]} {Human: ENSG00000204710, SPDYC, speedy/RINGO cell cycle regulator family member C, [RH, Score=92.0, Expect=1e-20]; ENSG00000163806, SPDYA, speedy/RINGO cell cycle regulator family member A, [RH, Score=87.8, Expect=4e-19]} {Mouse: ENSMUSG00000052525, Spdya, speedy/RINGO cell cycle regulator family, member A, [RH, Score=87.4, Expect=4e-19]} {Smed: dd_Smed_v6_29468_0_1, dd_Smed_v6_29468_0_1, [RH, Score=102, Expect=9e-25]} {RNA1509_12112, RNA1509_25393} {RNA1310_23429, RNA1509_25393} {RNA1509_25393, RNA815_28518}
5.	MligTC455_08038	8	0.18	Mlig455_002909	Neo: - Age: -	ARHGAP19	0.976	-	-	-	-	0.976	-	Mlig455_002909 {REF} {Length: 2124} {Pfam: RhoGAP domain [PF00620.29, score=73.7]} {Human: ENSG00000213390, ARHGAP19, Rho GTPase activating protein 19, [Score=80.5, Expect=2e-15]; ENSG00000269891, ARHGAP19-SLIT1, ARHGAP19-SLIT1 readthrough (NMD candidate), [Score=80.5, Expect=2e-15]} {Mouse: ENSMUSG00000025154, Arhgap19, Rho GTPase activating protein 19, [Score=79.3, Expect=4e-15]} {Dmel: FBgn0034249, RhoGAP54D, Rho GTPase activating protein at 54D, [Score=61.2, Expect=2e-09]} {Celegans: WBGene00013135, rga-2, Rho GTPase Activating protein, [Score=62.8, Expect=5e-10]} {Smed: dd_Smed_v6_6320_0_1, dd_Smed_v6_6320_0_1, [Score=54.3, Expect=1e-07]} {RNA1310_147775}
6.	MligTC455_22272	6	0.13	Mlig455_050013	Neo: - Age: -		0.975	-	-	-	-	0.975	-	Mlig455_050013 {REF} {Length: 1355} {NoTransDecoderORF} {RNA1509_12830} {RNA1310_79708} {RNA815_9685.1}
7.	MligTC455_43177	11	0.22	Mlig455_049065	Neo: - Age: -		0.975	-	-	-	-	0.975	-	Mlig455_049065 {REF} {Length: 1047} {NoTransDecoderORF} {RNA1310_144315}
8.	MligTC455_18452	224	4.66	Mlig455_057585	Neo: - Age: -	SLC25A19	0.967	-	-	-	-	0.967	-	Mlig455_057585 {REF} {Length: 2123} {TRANSSPLICED} {Pfam: Mitochondrial carrier protein [PF00153.29, score=175.6]; Keratin, high sulfur B2 protein [PF13885.8, score=25.5]} {Human: ENSG00000125454, SLC25A19, solute carrier family 25 member 19, [RH, Score=217, Expect=8e-66]} {Mouse: ENSMUSG00000020744, Slc25a19, solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19, [RH, Score=209, Expect=5e-63]} {Dmel: FBgn0037852, Tpc1, Thiamine pyrophosphate carrier protein 1, [Score=157, Expect=1e-43]} {Celegans: WBGene00016588, hpo-12, [RH, Score=179, Expect=4e-52]} {Smed: dd_Smed_v6_8180_0_1, dd_Smed_v6_8180_0_1, [RH, Score=208, Expect=4e-63]} {RNA1509_10133} {RNA1310_17797} {RNA815_5564}
9.	MligTC455_53595	20	0.42	Mlig455_067432	Neo: - Age: -	SLC24A2	0.965	-	-	-	-	0.965	-	Mlig455_067432 {REF} {Length: 4224} {Pfam: Sodium/calcium exchanger protein [PF01699.26, score=186.7]} {Human: ENSG00000155886, SLC24A2, solute carrier family 24 member 2, [RH, Score=498, Expect=4e-168]} {Mouse: ENSMUSG00000037996, Slc24a2, solute carrier family 24 (sodium/potassium/calcium exchanger), member 2, [RH, Score=502, Expect=2e-169]} {Dmel: FBgn0028704, Nckx30C, [RH, Score=499, Expect=2e-166]} {Celegans: WBGene00003569, ncx-4, Na/Ca eXchangers, [Score=223, Expect=3e-64]} {Smed: dd_Smed_v6_5868_0_4, dd_Smed_v6_5868_0_4, [Score=184, Expect=9e-51]} {RNA1509_26587} {RNA1310_76563} {RNA815_21902.1}
10.	MligTC455_11416	9	0.18	Mlig455_070337	Neo: - Age: -		0.964	-	-	-	-	0.964	-	Mlig455_070337 {REF} {Length: 3699} {NoTransDecoderORF} {RNA1310_92196} {RNA815_36940}
11.	MligTC455_29859	11	0.22	Mlig455_011021	Neo: - Age: -	ITPR1	0.962	-	-	-	-	0.962	-	Mlig455_011021 {REF} {Length: 2073} {Pfam: Ion transport protein [PF00520.33, score=19.8]} {Human: ENSG00000150995, ITPR1, inositol 1,4,5-trisphosphate receptor type 1, [Score=153, Expect=2e-38]} {Mouse: ENSMUSG00000030102, Itpr1, inositol 1,4,5-trisphosphate receptor 1, [Score=154, Expect=1e-38]} {Dmel: FBgn0010051, Itp-r83A, Inositol 1,4,5,-tris-phosphate receptor, [Score=138, Expect=1e-33]} {Celegans: WBGene00002173, itr-1, Inositol 1,4,5-trisphosphate receptor itr-1, [Score=136, Expect=3e-33]} {Smed: dd_Smed_v6_3814_1_2, dd_Smed_v6_3814_1_2, [Score=551, Expect=0.0]} {RNA1509_25537} {RNA1310_434.1} {RNA815_101}
12.	MligTC455_43700	28	0.58	Mlig455_047711	Neo: - Age: - Regeneration-upregulated R2: 3.521 Regeneration-enriched R2: 3.521	LZTS3	0.96	-	-	-	-	0.960	-	Mlig455_047711 {REF} {Length: 3139} {Pfam: Fez1 [PF06818.17, score=51.8]} {Human: ENSG00000088899, LZTS3, leucine zipper tumor suppressor family member 3, [Score=55.8, Expect=1e-07]} {Smed: dd_Smed_v6_9487_0_1, dd_Smed_v6_9487_0_1, [RH, Score=65.1, Expect=5e-11]} {RNA1509_57436} {RNA1310_22131} {RNA815_51549}
13.	MligTC455_28356	50	1.03	Mlig455_037254	Neo: - Age: Up-Down-Down		0.958	-	-	-	-	0.958	-	Mlig455_037254 {REF} {Length: 1961} {RNA1509_11960} {RNA1310_11061} {RNA815_18873}
14.	MligTC455_30533	175	3.66	Mlig455_011508	Neo: - Age: logFC(26M/2M)=-0.396	ODF2	0.955	-	-	-	-	0.955	-	Mlig455_011508 {REF} {Length: 3294} {TRANSSPLICED} {Human: ENSG00000136811, ODF2, outer dense fiber of sperm tails 2, [Score=109, Expect=5e-24]} {Mouse: ENSMUSG00000026790, Odf2, outer dense fiber of sperm tails 2, [Score=109, Expect=4e-24]} {Smed: dd_Smed_v6_3609_0_2, dd_Smed_v6_3609_0_2, [Score=89.4, Expect=3e-18]} {RNA1509_12480} {RNA1310_8290} {RNA815_8319}
15.	MligTC455_57008	10	0.22	Mlig455_044186	Neo: - Age: -		0.955	-	-	-	-	0.955	-	Mlig455_044186 {REF} {Length: 852} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=46.6]} {RNA1509_47056} {RNA1310_46488.2} {RNA815_14744.1}
16.	MligTC455_22024	15	0.32	Mlig455_020103, Mlig455_069893	Neo: Int S/G2/M Age: -		0.954	-	-	-	-	0.954	-	Mlig455_020103 {REF} {Length: 2186} {Pfam: gag-polyprotein putative aspartyl protease [PF13975.8, score=33.6]; Aspartyl protease [PF13650.8, score=27.9]; PNMA [PF14893.8, score=24.8]; Retroviral aspartyl protease [PF00077.22, score=22.0]} {RNA1509_39864} {RNA1310_9809} {RNA815_20192} Mlig455_069893 {REF} {Length: 2527} {Pfam: PNMA [PF14893.8, score=25.8]; Aspartyl protease [PF13650.8, score=19.9]; gag-polyprotein putative aspartyl protease [PF13975.8, score=19.4]} {RNA1509_38146} {RNA1310_9809} {RNA815_20192}

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