Data search
Results for MligTC455_13656
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_13656 | 118 | 2.45 | Mlig455_027799 | Neo: Irradiation Age: Down-Up-Down Region-enriched R6: 2.903/0.03822 |
Mlig455_027799 {REF} {Length: 4703} {RNA1509_57337} {RNA1310_9265} {RNA815_13115} |
Cumulative graph for MligTC455_13656
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -6.592 | 2.161 | 0.99954 | 1.00000 | |
| RegionR2 | 2.943 | 2.161 | 0.01337 | 0.12085 | |
| RegionR3 | 1.434 | 2.161 | 0.17769 | 0.70691 | |
| RegionR4 | -1.188 | 2.161 | 0.93502 | 1.00000 | |
| RegionR5 | 1.868 | 2.161 | 0.03584 | 0.14715 | |
| RegionR6 | 2.903 | 2.161 | 0.00099 | 0.03822 | |
| RegionR7 | -3.795 | 2.161 | 0.99957 | 1.00000 | |
| RegionR8 | 2.426 | 2.161 | 0.10022 | 0.59433 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | 2.234 | 2.161 | 0.99988 | 1.00000 | |
| RegenerationR2 | 0.307 | 2.161 | 0.63424 | 0.92899 | |
| RegenerationR3 | 1.31 | 2.161 | 0.08428 | 0.47437 | |
| RegenerationR4 | 2.502 | 2.161 | 0.00105 | 0.03629 | |
| RegenerationR5 | 1.753 | 2.161 | 0.00130 | 0.06062 | |
| RegenerationR6 | 0.247 | 2.161 | 0.70250 | 0.92578 | |
| RegenerationBL | 0.199 | 2.161 | 0.71005 | 1.00000 | |
| RegenerationTP | 2.784 | 2.161 | 0.10825 | 0.50788 |
Genes with expression patterns similar to MligTC455_13656
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_13656 | 118 | 2.45 | Mlig455_027799 | Neo: Irradiation Age: Down-Up-Down Region-enriched R6: 2.903/0.03822 |
6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_027799 {REF} {Length: 4703} {RNA1509_57337} {RNA1310_9265} {RNA815_13115} | |
| 2. | MligTC455_44227 | 341 | 7.1 | Mlig455_009906 | Neo: Irradiation Age: logFC(26M/2M)=0.313 Region-enriched R5: 2.802/0.00001 |
2.424 | 0.950 | - | - | - | 0.747 | 0.727 | Mlig455_009906 {REF} {Length: 1440} {TRANSSPLICED} {RNA1509_28854, RNA1509_57336} {RNA1310_23098.2, RNA1509_28854, RNA1509_57336} {RNA1509_28854, RNA1509_57336, RNA815_19680.1} | |
| 3. | MligTC455_36836 | 71 | 1.47 | Mlig455_048099 | Neo: - Age: - |
1.778 | 0.825 | - | - | - | 0.953 | - | Mlig455_048099 {REF} {Length: 1394} {TRANSSPLICED} {RNA1509_58153} {RNA1310_20702.1, RNA1509_58153} {RNA1509_58153, RNA815_50889} | |
| 4. | MligTC455_45073 | 90 | 1.87 | Mlig455_060170 | Neo: - Age: Down-Down-Up |
ASIC5 | 0.97 | - | - | 0.970 | - | - | - | Mlig455_060170 {REF} {Length: 2809} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=199.0]} {Human: ENSG00000256394, ASIC5, acid sensing ion channel subunit family member 5, [Score=63.9, Expect=6e-10]} {Mouse: ENSMUSG00000028008, Asic5, acid-sensing (proton-gated) ion channel family member 5, [Score=61.6, Expect=2e-09]} {Celegans: WBGene00010278, F58G6.8, [Score=57.0, Expect=5e-09]} {Smed: dd_Smed_v6_12037_0_1, dd_Smed_v6_12037_0_1, [RH, Score=442, Expect=1e-145]} {RNA1509_30695} {RNA1310_7174.1} {RNA815_3961} |
| 5. | MligTC455_22864 | 210 | 4.38 | Mlig455_017044 | Neo: - Age: Up-Down-Down Region-enriched R5: 1.634/0.00913 |
TOPORS | 0.964 | - | - | - | - | - | 0.964 | Mlig455_017044 {REF} {Length: 4096} {Pfam: Ring finger domain [PF13639.8, score=34.1]; RING-H2 zinc finger domain [PF12678.9, score=29.2]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=26.2]; RING-type zinc-finger [PF13445.8, score=23.4]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=22.7]; Zinc-ribbon, C4HC2 type [PF17120.7, score=22.5]} {Human: ENSG00000197579, TOPORS, TOP1 binding arginine/serine rich protein, [Score=50.1, Expect=6e-06]} {Mouse: ENSMUSG00000036822, Topors, topoisomerase I binding, arginine/serine-rich, [Score=49.3, Expect=6e-06]} {Dmel: FBgn0037344, CG2926, [Score=65.1, Expect=5e-11]} {Smed: dd_Smed_v6_8691_0_1, dd_Smed_v6_8691_0_1, [Score=47.4, Expect=1e-06]} {RNA1509_14851} {RNA1310_7090.1, RNA1509_14851} {RNA1509_14851, RNA815_11461} |
| 6. | MligTC455_13937 | 387 | 8.07 | Mlig455_028006, Mlig455_028036 | Neo: Irradiation Age: - Region-enriched R5: 2.460/0.00025 |
CDC6 | 0.963 | - | - | - | - | - | 0.963 | Mlig455_028006 {REF} {Length: 2767} {TRANSSPLICED} {Pfam: CDC6, C terminal winged helix domain [PF09079.13, score=33.5]; AAA domain [PF13401.8, score=28.9]; AAA ATPase domain [PF13191.8, score=26.6]; AAA lid domain [PF17872.3, score=21.5]; AAA domain [PF13245.8, score=21.4]; Type II/IV secretion system protein [PF00437.22, score=19.3]} {Human: ENSG00000094804, CDC6, cell division cycle 6, [Score=110, Expect=3e-25]} {Mouse: ENSMUSG00000017499, Cdc6, cell division cycle 6, [Score=115, Expect=6e-27]} {Dmel: FBgn0035918, Cdc6, [Score=93.6, Expect=5e-20]} {Smed: dd_Smed_v6_18778_0_1, dd_Smed_v6_18778_0_1, [Score=92.4, Expect=5e-20]} {RNA1509_55655} {RNA1310_35548} {RNA815_7333.1} Mlig455_028036 {REF} {Length: 3756} {TRANSSPLICED} {Pfam: AAA domain [PF13401.8, score=42.2]; AAA ATPase domain [PF13191.8, score=37.7]; CDC6, C terminal winged helix domain [PF09079.13, score=33.9]; AAA domain [PF13245.8, score=27.0]; ATPase family associated with various cellular activities (AAA) [PF00004.31, score=24.5]; AAA lid domain [PF17872.3, score=21.2]; NACHT domain [PF05729.14, score=20.3]; Type II/IV secretion system protein [PF00437.22, score=18.2]} {Human: ENSG00000094804, CDC6, cell division cycle 6, [Score=132, Expect=2e-32]} {Mouse: ENSMUSG00000017499, Cdc6, cell division cycle 6, [Score=138, Expect=1e-34]} {Dmel: FBgn0035918, Cdc6, [Score=116, Expect=2e-27]} {Celegans: WBGene00000382, cdc-6, Cell Division Cycle related, [Score=112, Expect=2e-26]} {Smed: dd_Smed_v6_18778_0_1, dd_Smed_v6_18778_0_1, [Score=116, Expect=5e-28]} {RNA1509_16975, RNA1509_55655} {RNA1310_16898.1, RNA1509_16975, RNA1509_55655} {RNA1509_16975, RNA1509_55655, RNA815_7333.1} |
| 7. | MligTC455_41109 | 212 | 4.42 | Mlig455_044541, Mlig455_068558 | Neo: - Age: Down-Down-Up |
0.96 | - | - | - | 0.960 | - | - | Mlig455_044541 {REF} {Length: 2618} {RNA1509_50994} {RNA1310_14102} {RNA815_21266} Mlig455_068558 {REF} {Length: 2571} {RNA1509_50994} {RNA1310_14102} {RNA815_21266} |
|
| 8. | MligTC455_22512 | 144 | 3.01 | Mlig455_021249 | Neo: - Age: Down-Up-Down Region-enriched R5: 1.394/0.04502 |
DCAF5 | 0.958 | - | - | - | - | - | 0.958 | Mlig455_021249 {REF} {Length: 3184} {Pfam: WD domain, G-beta repeat [PF00400.34, score=48.0]} {Human: ENSG00000139990, DCAF5, DDB1 and CUL4 associated factor 5, [Score=207, Expect=3e-55]} {Mouse: ENSMUSG00000049106, Dcaf5, DDB1 and CUL4 associated factor 5, [Score=206, Expect=3e-55]} {Dmel: FBgn0250755, CG42233, [Score=199, Expect=1e-53]} {Celegans: WBGene00011242, R11D1.1, [RH, Score=117, Expect=3e-27]} {Smed: dd_Smed_v6_3099_0_1, dd_Smed_v6_3099_0_1, [Score=65.5, Expect=7e-11]} {RNA1509_10750} {RNA1310_849} {RNA815_4050} |
| 9. | MligTC455_15858 | 219 | 4.57 | Mlig455_007627, Mlig455_007649 | Neo: - Age: - |
0.955 | - | - | 0.955 | - | - | - | Mlig455_007627 {REF} {Length: 1538} {Pfam: WSC domain [PF01822.21, score=51.8]} {Mouse: ENSMUSG00000063430, Wscd2, WSC domain containing 2, [Score=56.6, Expect=1e-08]} {Dmel: FBgn0015360, oxt, peptide O-xylosyltransferase, [Score=52.4, Expect=2e-07]} {RNA1509_16706} {RNA1310_13076.1} {RNA815_4668} Mlig455_007649 {REF} {Length: 1622} {TRANSSPLICED} {Pfam: WSC domain [PF01822.21, score=50.5]} {Mouse: ENSMUSG00000063430, Wscd2, WSC domain containing 2, [Score=53.9, Expect=3e-08]} {Dmel: FBgn0015360, oxt, peptide O-xylosyltransferase, [Score=55.8, Expect=6e-09]} {RNA1509_16706} {RNA1310_13076.1} {RNA815_4668} |
|
| 10. | MligTC455_25472 | 100 | 2.07 | Mlig455_040494 | Neo: - Age: Up-Up-Down |
RAPH1 | 0.952 | - | - | 0.952 | - | - | - | Mlig455_040494 {REF} {Length: 1705} {Pfam: PH domain [PF00169.31, score=40.6]} {Human: ENSG00000173166, RAPH1, Ras association (RalGDS/AF-6) and pleckstrin homology domains 1, [Score=107, Expect=2e-26]} {Mouse: ENSMUSG00000026014, Raph1, Ras association (RalGDS/AF-6) and pleckstrin homology domains 1, [Score=104, Expect=7e-26]} {Dmel: FBgn0261811, pico, [Score=88.2, Expect=4e-20]} {Celegans: WBGene00003243, mig-10, Abnormal cell migration protein 10, [Score=90.5, Expect=3e-21]} {Smed: dd_Smed_v6_3216_0_1, dd_Smed_v6_3216_0_1, [Score=120, Expect=9e-32]} {RNA1509_24403} {RNA1310_12419} {RNA815_13072} |
| 11. | MligTC455_43986 | 93 | 1.93 | Mlig455_041502 | Neo: - Age: Down-Up-Up |
0.952 | - | - | 0.952 | - | - | - | Mlig455_041502 {REF} {Length: 1445} {NoTransDecoderORF} {RNA1310_32341.1} {RNA815_43781} | |
| 12. | MligTC455_25950 | 82 | 1.7 | Mlig455_019766 | Neo: - Age: - |
SNTG1 | 0.951 | - | - | - | 0.951 | - | - | Mlig455_019766 {REF} {Length: 3597} {TRANSSPLICED} {Pfam: PDZ domain [PF00595.26, score=32.4]} {Human: ENSG00000147481, SNTG1, syntrophin gamma 1, [RH, Score=147, Expect=1e-37]} {Mouse: ENSMUSG00000025909, Sntg1, syntrophin, gamma 1, [RH, Score=141, Expect=8e-36]} {Dmel: FBgn0034135, Syn2, Syntrophin-like 2, [Score=172, Expect=4e-47]} {Celegans: WBGene00017866, stn-2, SynTrophiN, [Score=121, Expect=3e-29]} {Smed: dd_Smed_v6_14961_0_1, dd_Smed_v6_14961_0_1, [Score=70.5, Expect=1e-12]} {RNA1509_47711} {RNA1310_23114} {RNA815_3631} |
| 13. | MligTC455_19603 | 707 | 14.74 | Mlig455_056946 | Neo: - Age: - |
SPG11 | 0.95 | - | - | - | - | 0.950 | - | Mlig455_056946 {REF} {Length: 5169} {Pfam: Spatacsin C-terminus [PF14649.8, score=86.2]} {Human: ENSG00000104133, SPG11, SPG11, spatacsin vesicle trafficking associated, [RH, Score=77.4, Expect=1e-13]} {Mouse: ENSMUSG00000033396, Spg11, SPG11, spatacsin vesicle trafficking associated, [RH, Score=78.6, Expect=7e-14]} {RNA1509_13653, RNA1509_47896, RNA1509_53456} {RNA1310_1096.1, RNA1509_13653, RNA1509_47896, RNA1509_53456} {RNA1509_13653, RNA1509_47896, RNA1509_53456, RNA815_16392} |
Berezikov Lab - 2020-2021 © ERIBA