M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_13899

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_13899 14 0.29 Mlig455_007781

Neo: -

Age: Up-Down-Up

 CACNA1H Mlig455_007781 {REF} {Length: 6753} {Pfam: Ion transport protein [PF00520.33, score=786.6]; Polycystin cation channel [PF08016.14, score=57.8]; FAM176 family [PF14851.8, score=19.4]} {Human: ENSG00000196557, CACNA1H, calcium voltage-gated channel subunit alpha1 H, [RH, Score=1032, Expect=0.0]; ENSG00000006283, CACNA1G, calcium voltage-gated channel subunit alpha1 G, [RH, Score=1006, Expect=0.0]} {Mouse: ENSMUSG00000024112, Cacna1h, calcium channel, voltage-dependent, T type, alpha 1H subunit, [RH, Score=1035, Expect=0.0]; ENSMUSG00000020866, Cacna1g, calcium channel, voltage-dependent, T type, alpha 1G subunit, [RH, Score=1003, Expect=0.0]} {Dmel: FBgn0264386, Ca-alpha1T, Ca[2+]-channel protein alpha[[1]] subunit T, [RH, Score=862, Expect=0.0]} {Celegans: WBGene00000367, cca-1, Voltage-dependent T-type calcium channel subunit alpha, [RH, Score=758, Expect=0.0]} {Smed: dd_Smed_v6_14730_0_1, dd_Smed_v6_14730_0_1, [RH, Score=1701, Expect=0.0]} {RNA1509_48619} {RNA1310_5687} {RNA815_28647}

Cumulative graph for MligTC455_13899

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_13899

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_13899 14 0.29 Mlig455_007781

Neo: -

Age: Up-Down-Up

 CACNA1H 1 - - - - 1.000 - Mlig455_007781 {REF} {Length: 6753} {Pfam: Ion transport protein [PF00520.33, score=786.6]; Polycystin cation channel [PF08016.14, score=57.8]; FAM176 family [PF14851.8, score=19.4]} {Human: ENSG00000196557, CACNA1H, calcium voltage-gated channel subunit alpha1 H, [RH, Score=1032, Expect=0.0]; ENSG00000006283, CACNA1G, calcium voltage-gated channel subunit alpha1 G, [RH, Score=1006, Expect=0.0]} {Mouse: ENSMUSG00000024112, Cacna1h, calcium channel, voltage-dependent, T type, alpha 1H subunit, [RH, Score=1035, Expect=0.0]; ENSMUSG00000020866, Cacna1g, calcium channel, voltage-dependent, T type, alpha 1G subunit, [RH, Score=1003, Expect=0.0]} {Dmel: FBgn0264386, Ca-alpha1T, Ca[2+]-channel protein alpha[[1]] subunit T, [RH, Score=862, Expect=0.0]} {Celegans: WBGene00000367, cca-1, Voltage-dependent T-type calcium channel subunit alpha, [RH, Score=758, Expect=0.0]} {Smed: dd_Smed_v6_14730_0_1, dd_Smed_v6_14730_0_1, [RH, Score=1701, Expect=0.0]} {RNA1509_48619} {RNA1310_5687} {RNA815_28647}
2. MligTC455_03936 12 0.24 Mlig455_060223, Mlig455_060238

Neo: -

Age: logFC(26M/2M)=-0.322

 RXRA 0.997 - - - - 0.997 -

Mlig455_060223 {REF} {Length: 1175} {TRANSSPLICED} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=100.0]; Ligand-binding domain of nuclear hormone receptor [PF00104.32, score=33.3]} {Human: ENSG00000186350, RXRA, retinoid X receptor alpha, [Score=205, Expect=3e-61]; ENSG00000143171, RXRG, retinoid X receptor gamma, [Score=200, Expect=1e-60]; ENSG00000227322, RXRB, retinoid X receptor beta, [Score=198, Expect=1e-59]} {Mouse: ENSMUSG00000015846, Rxra, retinoid X receptor alpha, [Score=205, Expect=2e-61]; ENSMUSG00000015843, Rxrg, retinoid X receptor gamma, [Score=202, Expect=2e-61]; ENSMUSG00000039656, Rxrb, retinoid X receptor beta, [Score=196, Expect=3e-58]} {Dmel: FBgn0003964, usp, ultraspiracle, [Score=147, Expect=1e-39]} {Celegans: WBGene00003613, nhr-14, Nuclear hormone receptor family member nhr-14, [RH, Score=145, Expect=3e-39]} {Smed: dd_Smed_v6_12210_0_1, dd_Smed_v6_12210_0_1, [Score=152, Expect=1e-41]} {RNA1509_9759} {RNA1310_9134.2} {RNA815_45364}

Mlig455_060238 {REF} {Length: 1175} {TRANSSPLICED} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=100.8]; Ligand-binding domain of nuclear hormone receptor [PF00104.32, score=33.3]} {Human: ENSG00000186350, RXRA, retinoid X receptor alpha, [Score=204, Expect=6e-61]; ENSG00000143171, RXRG, retinoid X receptor gamma, [Score=200, Expect=1e-60]; ENSG00000227322, RXRB, retinoid X receptor beta, [Score=198, Expect=8e-60]; ENSG00000235712, RXRB, retinoid X receptor beta, [Score=195, Expect=1e-56]; ENSG00000231321, RXRB, retinoid X receptor beta, [Score=195, Expect=1e-56]; ENSG00000228333, RXRB, retinoid X receptor beta, [Score=195, Expect=1e-56]; ENSG00000206289, RXRB, retinoid X receptor beta, [Score=195, Expect=1e-56]; ENSG00000204231, RXRB, retinoid X receptor beta, [Score=195, Expect=1e-56]} {Mouse: ENSMUSG00000015846, Rxra, retinoid X receptor alpha, [Score=205, Expect=3e-61]; ENSMUSG00000015843, Rxrg, retinoid X receptor gamma, [Score=202, Expect=2e-61]; ENSMUSG00000039656, Rxrb, retinoid X receptor beta, [Score=196, Expect=2e-58]} {Dmel: FBgn0003964, usp, ultraspiracle, [Score=147, Expect=2e-39]} {Celegans: WBGene00003613, nhr-14, Nuclear hormone receptor family member nhr-14, [RH, Score=146, Expect=1e-39]} {Smed: dd_Smed_v6_12210_0_1, dd_Smed_v6_12210_0_1, [Score=155, Expect=6e-43]} {RNA1509_9759} {RNA1310_9134.2} {RNA815_45364}
3. MligTC455_07572 8 0.16 Mlig455_030571

Neo: -

Age: -

 0.997 - - - - 0.997 - Mlig455_030571 {REF} {Length: 824} {NoTransDecoderORF}
4. MligTC455_23548 13 0.28 Mlig455_029881

Neo: -

Age: -

 0.997 - - - - 0.997 - Mlig455_029881 {REF} {Length: 2293} {RNA1310_58945} {RNA815_43403}
5. MligTC455_34874 4 0.09 Mlig455_017496

Neo: -

Age: -

 0.997 - - - - 0.997 - Mlig455_017496 {REF} {Length: 1002} {NoTransDecoderORF} {RNA1509_52469} {RNA1310_33267} {RNA815_18908}
6. MligTC455_10332 16 0.33 Mlig455_040016

Neo: -

Age: -

 0.994 - - - - 0.994 - Mlig455_040016 {REF} {Length: 402} {TRANSSPLICED}
7. MligTC455_01495 2 0.05 Mlig455_061058

Neo: -

Age: -

 0.992 - - - - 0.992 - Mlig455_061058 {REF} {Length: 750} {NoTransDecoderORF} {RNA1509_31500} {RNA1310_39524} {RNA815_50438}
8. MligTC455_55286 4 0.08 Mlig455_013528

Neo: -

Age: -

 TRHR 0.992 - - - - 0.992 - Mlig455_013528 {REF} {Length: 827} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=105.7]; Serpentine type 7TM GPCR chemoreceptor Srv [PF10323.11, score=24.2]; Serpentine type 7TM GPCR chemoreceptor Srx [PF10328.11, score=20.5]} {Human: ENSG00000174417, TRHR, thyrotropin releasing hormone receptor, [Score=156, Expect=1e-44]} {Mouse: ENSMUSG00000038760, Trhr, thyrotropin releasing hormone receptor, [Score=154, Expect=8e-44]; ENSMUSG00000039079, Trhr2, thyrotropin releasing hormone receptor 2, [Score=150, Expect=1e-42]} {Dmel: FBgn0038874, ETHR, [Score=101, Expect=3e-24]} {Celegans: WBGene00016265, trhr-1, Thyrotropin-Releasing Hormone Receptor, [Score=143, Expect=3e-40]} {Smed: dd_Smed_v6_19246_0_1, dd_Smed_v6_19246_0_1, [Score=157, Expect=5e-46]} {RNA1310_139198}
9. MligTC455_08696 9 0.19 Mlig455_068591

Neo: -

Age: -

 0.991 - - - - 0.991 - Mlig455_068591 {REF} {Length: 89} {NoTransDecoderORF} {RNA1509_22353} {RNA1310_3519} {RNA815_9210.1}
10. MligTC455_01088 6 0.13 Mlig455_025587

Neo: -

Age: -

 0.987 - - - - 0.987 - Mlig455_025587 {REF} {Length: 311} {NoTransDecoderORF}
11. MligTC455_12447 7 0.14 Mlig455_026816

Neo: -

Age: -

 0.987 - - - - 0.987 - Mlig455_026816 {REF} {Length: 812} {NoTransDecoderORF}
12. MligTC455_03660 11 0.23 Mlig455_053334

Neo: -

Age: -

 0.982 - - - - 0.982 - Mlig455_053334 {REF} {Length: 10438} {RNA1509_13570} {RNA1310_105265, RNA1509_13570}
13. MligTC455_00534 9 0.19 Mlig455_046895

Neo: -

Age: -

 0.977 - - - - 0.977 - Mlig455_046895 {REF} {Length: 262} {NoTransDecoderORF}
14. MligTC455_08202 22 0.46 Mlig455_046373

Neo: -

Age: -

 0.977 - - - - 0.977 - Mlig455_046373 {REF} {Length: 280} {NoTransDecoderORF} {RNA1310_80724} {RNA815_19863}
15. MligTC455_08777 8 0.17 Mlig455_068101

Neo: -

Age: Down-Up-Down

 0.977 - - - - 0.977 - Mlig455_068101 {REF} {Length: 601} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_54477} {RNA1310_61043} {RNA815_11673}
16. MligTC455_13057 19 0.39 Mlig455_053259

Neo: -

Age: -

 0.977 - - - - 0.977 - Mlig455_053259 {REF} {Length: 192} {NoTransDecoderORF} {RNA1310_113177.2}
17. MligTC455_25061 16 0.34 Mlig455_013138

Neo: -

Age: logFC(26M/2M)=-0.554

 RASEF 0.977 - - - - 0.977 - Mlig455_013138 {REF} {Length: 3781} {Pfam: Ras family [PF00071.24, score=110.9]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=56.0]; EF-hand domain pair [PF13499.8, score=42.2]; EF hand [PF00036.34, score=41.5]; ADP-ribosylation factor family [PF00025.23, score=40.5]; EF-hand domain [PF13405.8, score=39.5]; EF-hand domain pair [PF13833.8, score=33.0]; EF hand [PF13202.8, score=29.0]; Elongation factor Tu GTP binding domain [PF00009.29, score=23.7]} {Human: ENSG00000165105, RASEF, RAS and EF-hand domain containing, [Score=149, Expect=2e-36]} {Mouse: ENSMUSG00000043003, Rasef, RAS and EF hand domain containing, [Score=142, Expect=3e-35]} {Dmel: FBgn0285937, Rab1, [Score=93.2, Expect=2e-21]} {Celegans: WBGene00007067, 4R79.2, Rab-44, [Score=119, Expect=2e-29]} {Smed: dd_Smed_v6_4284_0_1, dd_Smed_v6_4284_0_1, [Score=171, Expect=4e-44]} {RNA1509_21698} {RNA1310_2939.1} {RNA815_9067}
18. MligTC455_41216 14 0.29 Mlig455_048411

Neo: -

Age: -

 0.977 - - - - 0.977 - Mlig455_048411 {REF} {Length: 1979} {NoTransDecoderORF} {RNA1310_52358}
19. MligTC455_42765 49 1.03 Mlig455_055136

Neo: -

Age: logFC(26M/2M)=0.439

Region-enriched R5: 2.826/0.04177

 AHNAK2 0.977 - - - - 0.977 - Mlig455_055136 {REF} {Length: 6053} {TRANSSPLICED} {Human: ENSG00000185567, AHNAK2, AHNAK nucleoprotein 2, [Score=68.2, Expect=2e-10]} {Mouse: ENSMUSG00000072812, Ahnak2, AHNAK nucleoprotein 2, [Score=51.2, Expect=1e-05]} {RNA1509_23810} {RNA1310_9986} {RNA815_12447.1}
20. MligTC455_31046 12 0.25 Mlig455_054928

Neo: -

Age: -

 LRRN3 0.976 - - - - 0.976 - Mlig455_054928 {REF} {Length: 3787} {Pfam: Immunoglobulin domain [PF13927.8, score=35.6]; Immunoglobulin I-set domain [PF07679.18, score=34.7]; Immunoglobulin domain [PF00047.27, score=29.3]; Apolipoprotein A1/A4/E domain [PF01442.20, score=20.1]} {Human: ENSG00000173114, LRRN3, leucine rich repeat neuronal 3, [Score=53.5, Expect=1e-06]} {Dmel: FBgn0032479, CG16974, [RH, Score=114, Expect=1e-25]} {RNA1509_10344} {RNA1310_3046.1} {RNA815_12103}
21. MligTC455_04548 10 0.21 Mlig455_047007

Neo: -

Age: -

 TYMP 0.973 - - - - 0.973 - Mlig455_047007 {REF} {Length: 1462} {TRANSSPLICED} {Pfam: Glycosyl transferase family, a/b domain [PF00591.23, score=114.4]; Glycosyl transferase family, helical bundle domain [PF02885.19, score=55.5]; Pyrimidine nucleoside phosphorylase C-terminal domain [PF07831.15, score=27.3]} {Human: ENSG00000025708, TYMP, thymidine phosphorylase, [RH, Score=324, Expect=7e-106]} {Mouse: ENSMUSG00000022615, Tymp, thymidine phosphorylase, [RH, Score=320, Expect=1e-104]} {Smed: dd_Smed_v6_869_0_1, dd_Smed_v6_869_0_1, [RH, Score=323, Expect=2e-106]} {RNA1509_12879} {RNA1310_15453} {RNA815_1859}
22. MligTC455_14435 12 0.24 Mlig455_037430

Neo: -

Age: -

 0.97 - - - - 0.970 - Mlig455_037430 {REF} {Length: 1602} {Pfam: Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=22.4]} {RNA1310_101337}
23. MligTC455_04858 23 0.48 Mlig455_024920

Neo: -

Age: Up-Down-Down

 0.969 - - - - 0.969 - Mlig455_024920 {REF} {Length: 3968} {Pfam: PMP-22/EMP/MP20/Claudin family [PF00822.22, score=23.5]} {Smed: dd_Smed_v6_20712_0_1, dd_Smed_v6_20712_0_1, [Score=62.0, Expect=5e-12]} {RNA1509_36367} {RNA1310_69230} {RNA815_43979}
24. MligTC455_51716 160 3.34 Mlig455_070217

Neo: -

Age: Up-Down-Down

 0.969 - - - - 0.969 - Mlig455_070217 {REF} {Length: 2635} {RNA1509_54215} {RNA1310_88667, RNA1509_54215} {RNA1509_54215, RNA815_36352}
25. MligTC455_00388 5 0.1 Mlig455_044945

Neo: -

Age: -

 0.965 - - - - 0.965 - Mlig455_044945 {REF} {Length: 549}
26. MligTC455_08841 17 0.35 Mlig455_031469

Neo: -

Age: -

 0.965 - - - - 0.965 - Mlig455_031469 {REF} {Length: 1393} {RNA1509_41272} {RNA1310_8791.1} {RNA815_53113}
27. MligTC455_51989 2 0.05 Mlig455_051194

Neo: -

Age: Up-Down-Up

 PLEKHG5 0.965 - - - - 0.965 - Mlig455_051194 {REF} {Length: 3355} {Pfam: RhoGEF domain [PF00621.22, score=89.4]} {Human: ENSG00000171680, PLEKHG5, pleckstrin homology and RhoGEF domain containing G5, [Score=139, Expect=1e-33]} {Mouse: ENSMUSG00000039713, Plekhg5, pleckstrin homology domain containing, family G (with RhoGef domain) member 5, [Score=144, Expect=4e-35]} {Dmel: FBgn0261556, CG42674, [Score=148, Expect=1e-36]} {Celegans: WBGene00006476, rhgf-2, RHGF-2; RHo Guanine nucleotide exchange Factor, [Score=81.3, Expect=1e-15]} {Smed: dd_Smed_v6_10072_0_1, dd_Smed_v6_10072_0_1, [Score=117, Expect=3e-27]} {RNA1509_23460} {RNA1310_8231} {RNA815_5839}
28. MligTC455_00458 2 0.05 Mlig455_031857

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_031857 {REF} {Length: 112} {NoTransDecoderORF}
29. MligTC455_47765 12 0.25 Mlig455_068551

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_068551 {REF} {Length: 4208} {RNA1509_51612} {RNA1310_8696} {RNA815_20831}
30. MligTC455_56260 12 0.25 Mlig455_006491

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_006491 {REF} {Length: 588} {NoTransDecoderORF} {RNA1310_98545}
31. MligTC455_23679 4 0.08 Mlig455_011968

Neo: -

Age: -

 MEIS3 0.961 - - - - 0.961 - Mlig455_011968 {REF} {Length: 2619} {TRANSSPLICED} {Pfam: Homeobox KN domain [PF05920.13, score=68.9]; N-terminal of Homeobox Meis and PKNOX1 [PF16493.7, score=60.8]; Homeodomain [PF00046.31, score=34.1]} {Human: ENSG00000105419, MEIS3, Meis homeobox 3, [Score=146, Expect=3e-39]; ENSG00000134138, MEIS2, Meis homeobox 2, [Score=144, Expect=1e-38]; ENSG00000160199, PKNOX1, PBX/knotted 1 homeobox 1, [Score=141, Expect=5e-37]} {Mouse: ENSMUSG00000006705, Pknox1, Pbx/knotted 1 homeobox, [Score=145, Expect=2e-38]; ENSMUSG00000027210, Meis2, Meis homeobox 2, [Score=144, Expect=1e-38]; ENSMUSG00000041420, Meis3, Meis homeobox 3, [Score=144, Expect=8e-39]; ENSMUSG00000020160, Meis1, Meis homeobox 1, [Score=138, Expect=1e-36]} {Dmel: FBgn0001235, hth, homothorax, [Score=102, Expect=3e-23]} {Celegans: WBGene00006796, unc-62, Homeobox protein unc-62, [Score=97.8, Expect=7e-22]} {Smed: dd_Smed_v6_8606_0_1, dd_Smed_v6_8606_0_1, [RH, Score=204, Expect=8e-59]} {RNA1509_11055} {RNA1310_21005.1} {RNA815_8428.1}
32. MligTC455_37424 15 0.32 Mlig455_026287

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_026287 {REF} {Length: 1087} {RNA1509_43962} {RNA1310_29023} {RNA815_25289}
33. MligTC455_06695 4 0.08 Mlig455_042165

Neo: -

Age: -

 MUC4 0.954 - - - - 0.954 - Mlig455_042165 {REF} {Length: 507} {Pfam: NigD-like N-terminal OB domain [PF12667.9, score=23.1]; NUMOD3 motif [PF07460.13, score=19.9]} {Human: ENSG00000278468, MUC4, mucin 4, cell surface associated, [Score=45.8, Expect=1e-05]; ENSG00000277585, MUC4, mucin 4, cell surface associated, [Score=45.8, Expect=1e-05]; ENSG00000276613, MUC4, mucin 4, cell surface associated, [Score=45.4, Expect=1e-05]; ENSG00000273984, MUC4, mucin 4, cell surface associated, [Score=45.4, Expect=1e-05]; ENSG00000273822, MUC4, mucin 4, cell surface associated, [Score=45.4, Expect=1e-05]; ENSG00000145113, MUC4, mucin 4, cell surface associated, [Score=45.4, Expect=1e-05]; ENSG00000278303, MUC4, mucin 4, cell surface associated, [Score=45.4, Expect=1e-05]} {RNA1509_35421} {RNA1310_79093} {RNA815_24569.1}
34. MligTC455_21949 42 0.88 Mlig455_011909

Neo: Int S/G2/M

Age: logFC(26M/2M)=1.149

 0.952 - - - - 0.952 - Mlig455_011909 {REF} {Length: 2730} {RNA1509_59141} {RNA1310_57197} {RNA815_37903}
35. MligTC455_54914 3 0.06 Mlig455_004626

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_004626 {REF} {Length: 27} {TRANSSPLICED} {NoTransDecoderORF}
36. MligTC455_39444 71 1.47 Mlig455_038780

Neo: -

Age: Down-Up-Down

 0.951 - - - - 0.951 - Mlig455_038780 {REF} {Length: 4569} {TRANSSPLICED} {RNA1509_58744} {RNA1310_20052} {RNA815_3028.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA