M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_04548

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_04548 10 0.21 Mlig455_047007

Neo: -

Age: -

 TYMP Mlig455_047007 {REF} {Length: 1462} {TRANSSPLICED} {Pfam: Glycosyl transferase family, a/b domain [PF00591.23, score=114.4]; Glycosyl transferase family, helical bundle domain [PF02885.19, score=55.5]; Pyrimidine nucleoside phosphorylase C-terminal domain [PF07831.15, score=27.3]} {Human: ENSG00000025708, TYMP, thymidine phosphorylase, [RH, Score=324, Expect=7e-106]} {Mouse: ENSMUSG00000022615, Tymp, thymidine phosphorylase, [RH, Score=320, Expect=1e-104]} {Smed: dd_Smed_v6_869_0_1, dd_Smed_v6_869_0_1, [RH, Score=323, Expect=2e-106]} {RNA1509_12879} {RNA1310_15453} {RNA815_1859}

Cumulative graph for MligTC455_04548

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.293 0.663 0.99973 1.00000
RegionR2 -1.484 0.663 0.99975 1.00000
RegionR3 0.637 0.663 0.99973 1.00000
RegionR4 2.001 0.663 0.99987 1.00000
RegionR5 1.668 0.663 0.99990 1.00000
RegionR6 0.261 0.663 0.99997 1.00000
RegionR7 -0.423 0.663 0.99999 1.00000
RegionR8 -0.367 0.663 0.99992 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.051 0.663 0.99994 1.00000
RegenerationR2 1.022 0.663 0.59342 0.91255
RegenerationR3 2.247 0.663 0.19009 0.62532
RegenerationR4 -0.612 0.663 0.90898 1.00000
RegenerationR5 0.238 0.663 0.67244 0.94193
RegenerationR6 2.532 0.663 0.49645 0.80339
RegenerationBL -1.039 0.663 0.99991 1.00000
RegenerationTP -0.658 0.663 0.99990 1.00000


Genes with expression patterns similar to MligTC455_04548

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_04548 10 0.21 Mlig455_047007

Neo: -

Age: -

 TYMP 2 - - - 1.000 1.000 - Mlig455_047007 {REF} {Length: 1462} {TRANSSPLICED} {Pfam: Glycosyl transferase family, a/b domain [PF00591.23, score=114.4]; Glycosyl transferase family, helical bundle domain [PF02885.19, score=55.5]; Pyrimidine nucleoside phosphorylase C-terminal domain [PF07831.15, score=27.3]} {Human: ENSG00000025708, TYMP, thymidine phosphorylase, [RH, Score=324, Expect=7e-106]} {Mouse: ENSMUSG00000022615, Tymp, thymidine phosphorylase, [RH, Score=320, Expect=1e-104]} {Smed: dd_Smed_v6_869_0_1, dd_Smed_v6_869_0_1, [RH, Score=323, Expect=2e-106]} {RNA1509_12879} {RNA1310_15453} {RNA815_1859}
2. MligTC455_13057 19 0.39 Mlig455_053259

Neo: -

Age: -

 1.88 - - - 0.909 0.971 - Mlig455_053259 {REF} {Length: 192} {NoTransDecoderORF} {RNA1310_113177.2}
3. MligTC455_51311 17 0.36 Mlig455_003546

Neo: -

Age: Up-Down-Down

 TRPC4 1.701 - - - 0.747 0.954 - Mlig455_003546 {REF} {Length: 3667} {Human: ENSG00000133107, TRPC4, transient receptor potential cation channel subfamily C member 4, [Score=175, Expect=1e-48]} {Mouse: ENSMUSG00000027748, Trpc4, transient receptor potential cation channel, subfamily C, member 4, [Score=173, Expect=3e-48]; ENSMUSG00000041710, Trpc5, transient receptor potential cation channel, subfamily C, member 5, [Score=166, Expect=7e-46]} {Dmel: FBgn0032593, Trpgamma, Transient receptor potential cation channel gamma, [Score=210, Expect=2e-61]} {Celegans: WBGene00006615, trp-2, TRP (Transient receptor potential) channel family; TRP homlogous cation channel protein, [Score=131, Expect=5e-34]} {Smed: dd_Smed_v6_15627_0_2, dd_Smed_v6_15627_0_2, [Score=251, Expect=1e-79]} {RNA1509_39535} {RNA1310_51104} {RNA815_28901}
4. MligTC455_49872 7 0.15 Mlig455_069574

Neo: -

Age: -

 CHRM4 1.683 - - - 0.954 0.729 - Mlig455_069574 {REF} {Length: 3648} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=158.8]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=61.4]; Serpentine type 7TM GPCR chemoreceptor Srx [PF10328.11, score=36.4]} {Human: ENSG00000180720, CHRM4, cholinergic receptor muscarinic 4, [Score=161, Expect=8e-43]; ENSG00000184984, CHRM5, cholinergic receptor muscarinic 5, [Score=156, Expect=8e-41]; ENSG00000133019, CHRM3, cholinergic receptor muscarinic 3, [Score=156, Expect=1e-40]; ENSG00000181072, CHRM2, cholinergic receptor muscarinic 2, [Score=154, Expect=1e-40]; ENSG00000168539, CHRM1, cholinergic receptor muscarinic 1, [Score=154, Expect=1e-40]} {Mouse: ENSMUSG00000040495, Chrm4, cholinergic receptor, muscarinic 4, [Score=162, Expect=2e-43]; ENSMUSG00000046159, Chrm3, cholinergic receptor, muscarinic 3, cardiac, [Score=157, Expect=6e-41]; ENSMUSG00000045613, Chrm2, cholinergic receptor, muscarinic 2, cardiac, [Score=156, Expect=2e-41]; ENSMUSG00000074939, Chrm5, cholinergic receptor, muscarinic 5, [Score=154, Expect=4e-40]; ENSMUSG00000032773, Chrm1, cholinergic receptor, muscarinic 1, CNS, [Score=154, Expect=8e-41]} {Dmel: FBgn0037546, mAChR-B, muscarinic Acetylcholine Receptor, B-type, [RH, Score=244, Expect=4e-70]} {Celegans: WBGene00001518, gar-2, Probable muscarinic acetylcholine receptor gar-2, [RH, Score=196, Expect=2e-54]} {Smed: dd_Smed_v6_13962_0_1, dd_Smed_v6_13962_0_1, [Score=321, Expect=4e-101]} {RNA1310_12338} {RNA815_52171}
5. MligTC455_08202 22 0.46 Mlig455_046373

Neo: -

Age: -

 0.999 - - - - 0.999 - Mlig455_046373 {REF} {Length: 280} {NoTransDecoderORF} {RNA1310_80724} {RNA815_19863}
6. MligTC455_06942 18 0.37 Mlig455_047631

Neo: -

Age: -

 0.99 - - - 0.990 - - Mlig455_047631 {REF} {Length: 1570} {RNA1310_122756}
7. MligTC455_51716 160 3.34 Mlig455_070217

Neo: -

Age: Up-Down-Down

 0.989 - - - - 0.989 - Mlig455_070217 {REF} {Length: 2635} {RNA1509_54215} {RNA1310_88667, RNA1509_54215} {RNA1509_54215, RNA815_36352}
8. MligTC455_25787 2 0.04 Mlig455_040930

Neo: -

Age: -

 PHKG1 0.988 - - - - 0.988 - Mlig455_040930 {REF} {Length: 1415} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=244.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=116.6]; Haspin like kinase domain [PF12330.10, score=28.2]; Kinase-like [PF14531.8, score=24.6]; Phosphotransferase enzyme family [PF01636.25, score=23.4]; Fungal protein kinase [PF17667.3, score=19.8]; Lipopolysaccharide kinase (Kdo/WaaP) family [PF06293.16, score=18.6]} {Human: ENSG00000164776, PHKG1, phosphorylase kinase catalytic subunit gamma 1, [Score=311, Expect=3e-104]; ENSG00000156873, PHKG2, phosphorylase kinase catalytic subunit gamma 2, [Score=307, Expect=7e-103]} {Mouse: ENSMUSG00000030815, Phkg2, phosphorylase kinase, gamma 2 (testis), [Score=309, Expect=2e-103]; ENSMUSG00000025537, Phkg1, phosphorylase kinase gamma 1, [Score=307, Expect=5e-103]} {Dmel: FBgn0011754, PhKgamma, Phosphorylase kinase gamma, [RH, Score=333, Expect=5e-111]} {Celegans: WBGene00021753, Y50D7A.3, [Score=276, Expect=8e-90]} {Smed: dd_Smed_v6_7480_0_2, dd_Smed_v6_7480_0_2, [Score=216, Expect=5e-66]} {RNA1509_44607} {RNA1310_10334.1} {RNA815_18526}
9. MligTC455_23679 4 0.08 Mlig455_011968

Neo: -

Age: -

 MEIS3 0.986 - - - - 0.986 - Mlig455_011968 {REF} {Length: 2619} {TRANSSPLICED} {Pfam: Homeobox KN domain [PF05920.13, score=68.9]; N-terminal of Homeobox Meis and PKNOX1 [PF16493.7, score=60.8]; Homeodomain [PF00046.31, score=34.1]} {Human: ENSG00000105419, MEIS3, Meis homeobox 3, [Score=146, Expect=3e-39]; ENSG00000134138, MEIS2, Meis homeobox 2, [Score=144, Expect=1e-38]; ENSG00000160199, PKNOX1, PBX/knotted 1 homeobox 1, [Score=141, Expect=5e-37]} {Mouse: ENSMUSG00000006705, Pknox1, Pbx/knotted 1 homeobox, [Score=145, Expect=2e-38]; ENSMUSG00000027210, Meis2, Meis homeobox 2, [Score=144, Expect=1e-38]; ENSMUSG00000041420, Meis3, Meis homeobox 3, [Score=144, Expect=8e-39]; ENSMUSG00000020160, Meis1, Meis homeobox 1, [Score=138, Expect=1e-36]} {Dmel: FBgn0001235, hth, homothorax, [Score=102, Expect=3e-23]} {Celegans: WBGene00006796, unc-62, Homeobox protein unc-62, [Score=97.8, Expect=7e-22]} {Smed: dd_Smed_v6_8606_0_1, dd_Smed_v6_8606_0_1, [RH, Score=204, Expect=8e-59]} {RNA1509_11055} {RNA1310_21005.1} {RNA815_8428.1}
10. MligTC455_39444 71 1.47 Mlig455_038780

Neo: -

Age: Down-Up-Down

 0.984 - - - - 0.984 - Mlig455_038780 {REF} {Length: 4569} {TRANSSPLICED} {RNA1509_58744} {RNA1310_20052} {RNA815_3028.1}
11. MligTC455_01495 2 0.05 Mlig455_061058

Neo: -

Age: -

 0.977 - - - - 0.977 - Mlig455_061058 {REF} {Length: 750} {NoTransDecoderORF} {RNA1509_31500} {RNA1310_39524} {RNA815_50438}
12. MligTC455_10332 16 0.33 Mlig455_040016

Neo: -

Age: -

 0.977 - - - - 0.977 - Mlig455_040016 {REF} {Length: 402} {TRANSSPLICED}
13. MligTC455_23548 13 0.28 Mlig455_029881

Neo: -

Age: -

 0.977 - - - - 0.977 - Mlig455_029881 {REF} {Length: 2293} {RNA1310_58945} {RNA815_43403}
14. MligTC455_34874 4 0.09 Mlig455_017496

Neo: -

Age: -

 0.977 - - - - 0.977 - Mlig455_017496 {REF} {Length: 1002} {NoTransDecoderORF} {RNA1509_52469} {RNA1310_33267} {RNA815_18908}
15. MligTC455_10288 17 0.35 Mlig455_019678

Neo: -

Age: -

 0.976 - - - 0.976 - - Mlig455_019678 {REF} {Length: 1244} {NoTransDecoderORF} {RNA1509_44393} {RNA1310_97891}
16. MligTC455_42765 49 1.03 Mlig455_055136

Neo: -

Age: logFC(26M/2M)=0.439

Region-enriched R5: 2.826/0.04177

 AHNAK2 0.976 - - - - 0.976 - Mlig455_055136 {REF} {Length: 6053} {TRANSSPLICED} {Human: ENSG00000185567, AHNAK2, AHNAK nucleoprotein 2, [Score=68.2, Expect=2e-10]} {Mouse: ENSMUSG00000072812, Ahnak2, AHNAK nucleoprotein 2, [Score=51.2, Expect=1e-05]} {RNA1509_23810} {RNA1310_9986} {RNA815_12447.1}
17. MligTC455_01088 6 0.13 Mlig455_025587

Neo: -

Age: -

 0.975 - - - - 0.975 - Mlig455_025587 {REF} {Length: 311} {NoTransDecoderORF}
18. MligTC455_12447 7 0.14 Mlig455_026816

Neo: -

Age: -

 0.975 - - - - 0.975 - Mlig455_026816 {REF} {Length: 812} {NoTransDecoderORF}
19. MligTC455_13899 14 0.29 Mlig455_007781

Neo: -

Age: Up-Down-Up

 CACNA1H 0.973 - - - - 0.973 - Mlig455_007781 {REF} {Length: 6753} {Pfam: Ion transport protein [PF00520.33, score=786.6]; Polycystin cation channel [PF08016.14, score=57.8]; FAM176 family [PF14851.8, score=19.4]} {Human: ENSG00000196557, CACNA1H, calcium voltage-gated channel subunit alpha1 H, [RH, Score=1032, Expect=0.0]; ENSG00000006283, CACNA1G, calcium voltage-gated channel subunit alpha1 G, [RH, Score=1006, Expect=0.0]} {Mouse: ENSMUSG00000024112, Cacna1h, calcium channel, voltage-dependent, T type, alpha 1H subunit, [RH, Score=1035, Expect=0.0]; ENSMUSG00000020866, Cacna1g, calcium channel, voltage-dependent, T type, alpha 1G subunit, [RH, Score=1003, Expect=0.0]} {Dmel: FBgn0264386, Ca-alpha1T, Ca[2+]-channel protein alpha[[1]] subunit T, [RH, Score=862, Expect=0.0]} {Celegans: WBGene00000367, cca-1, Voltage-dependent T-type calcium channel subunit alpha, [RH, Score=758, Expect=0.0]} {Smed: dd_Smed_v6_14730_0_1, dd_Smed_v6_14730_0_1, [RH, Score=1701, Expect=0.0]} {RNA1509_48619} {RNA1310_5687} {RNA815_28647}
20. MligTC455_40400 21 0.44 Mlig455_017027

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_017027 {REF} {Length: 3642} {RNA1509_51520} {RNA1310_42231} {RNA815_27203}
21. MligTC455_31046 12 0.25 Mlig455_054928

Neo: -

Age: -

 LRRN3 0.968 - - - - 0.968 - Mlig455_054928 {REF} {Length: 3787} {Pfam: Immunoglobulin domain [PF13927.8, score=35.6]; Immunoglobulin I-set domain [PF07679.18, score=34.7]; Immunoglobulin domain [PF00047.27, score=29.3]; Apolipoprotein A1/A4/E domain [PF01442.20, score=20.1]} {Human: ENSG00000173114, LRRN3, leucine rich repeat neuronal 3, [Score=53.5, Expect=1e-06]} {Dmel: FBgn0032479, CG16974, [RH, Score=114, Expect=1e-25]} {RNA1509_10344} {RNA1310_3046.1} {RNA815_12103}
22. MligTC455_14435 12 0.24 Mlig455_037430

Neo: -

Age: -

 0.966 - - - - 0.966 - Mlig455_037430 {REF} {Length: 1602} {Pfam: Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=22.4]} {RNA1310_101337}
23. MligTC455_00458 2 0.05 Mlig455_031857

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_031857 {REF} {Length: 112} {NoTransDecoderORF}
24. MligTC455_00388 5 0.1 Mlig455_044945

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_044945 {REF} {Length: 549}
25. MligTC455_03936 12 0.24 Mlig455_060223, Mlig455_060238

Neo: -

Age: logFC(26M/2M)=-0.322

 RXRA 0.963 - - - - 0.963 -

Mlig455_060223 {REF} {Length: 1175} {TRANSSPLICED} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=100.0]; Ligand-binding domain of nuclear hormone receptor [PF00104.32, score=33.3]} {Human: ENSG00000186350, RXRA, retinoid X receptor alpha, [Score=205, Expect=3e-61]; ENSG00000143171, RXRG, retinoid X receptor gamma, [Score=200, Expect=1e-60]; ENSG00000227322, RXRB, retinoid X receptor beta, [Score=198, Expect=1e-59]} {Mouse: ENSMUSG00000015846, Rxra, retinoid X receptor alpha, [Score=205, Expect=2e-61]; ENSMUSG00000015843, Rxrg, retinoid X receptor gamma, [Score=202, Expect=2e-61]; ENSMUSG00000039656, Rxrb, retinoid X receptor beta, [Score=196, Expect=3e-58]} {Dmel: FBgn0003964, usp, ultraspiracle, [Score=147, Expect=1e-39]} {Celegans: WBGene00003613, nhr-14, Nuclear hormone receptor family member nhr-14, [RH, Score=145, Expect=3e-39]} {Smed: dd_Smed_v6_12210_0_1, dd_Smed_v6_12210_0_1, [Score=152, Expect=1e-41]} {RNA1509_9759} {RNA1310_9134.2} {RNA815_45364}

Mlig455_060238 {REF} {Length: 1175} {TRANSSPLICED} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=100.8]; Ligand-binding domain of nuclear hormone receptor [PF00104.32, score=33.3]} {Human: ENSG00000186350, RXRA, retinoid X receptor alpha, [Score=204, Expect=6e-61]; ENSG00000143171, RXRG, retinoid X receptor gamma, [Score=200, Expect=1e-60]; ENSG00000227322, RXRB, retinoid X receptor beta, [Score=198, Expect=8e-60]; ENSG00000235712, RXRB, retinoid X receptor beta, [Score=195, Expect=1e-56]; ENSG00000231321, RXRB, retinoid X receptor beta, [Score=195, Expect=1e-56]; ENSG00000228333, RXRB, retinoid X receptor beta, [Score=195, Expect=1e-56]; ENSG00000206289, RXRB, retinoid X receptor beta, [Score=195, Expect=1e-56]; ENSG00000204231, RXRB, retinoid X receptor beta, [Score=195, Expect=1e-56]} {Mouse: ENSMUSG00000015846, Rxra, retinoid X receptor alpha, [Score=205, Expect=3e-61]; ENSMUSG00000015843, Rxrg, retinoid X receptor gamma, [Score=202, Expect=2e-61]; ENSMUSG00000039656, Rxrb, retinoid X receptor beta, [Score=196, Expect=2e-58]} {Dmel: FBgn0003964, usp, ultraspiracle, [Score=147, Expect=2e-39]} {Celegans: WBGene00003613, nhr-14, Nuclear hormone receptor family member nhr-14, [RH, Score=146, Expect=1e-39]} {Smed: dd_Smed_v6_12210_0_1, dd_Smed_v6_12210_0_1, [Score=155, Expect=6e-43]} {RNA1509_9759} {RNA1310_9134.2} {RNA815_45364}
26. MligTC455_07572 8 0.16 Mlig455_030571

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_030571 {REF} {Length: 824} {NoTransDecoderORF}
27. MligTC455_08841 17 0.35 Mlig455_031469

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_031469 {REF} {Length: 1393} {RNA1509_41272} {RNA1310_8791.1} {RNA815_53113}
28. MligTC455_06158 9 0.18 Mlig455_032880

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_032880 {REF} {Length: 2008} {Pfam: Glycine rich protein [PF12810.9, score=29.8]} {RNA1310_1880.1} {RNA815_25152}
29. MligTC455_29547 2 0.05 Mlig455_029277, Mlig455_068569

Neo: -

Age: -

 0.96 - - - - 0.960 -

Mlig455_029277 {REF} {Length: 1962} {Dmel: FBgn0029807, CG3108, [Score=57.4, Expect=1e-08]} {RNA1509_13531} {RNA1310_20135} {RNA815_212.1}

Mlig455_068569 {REF} {Length: 1316} {Pfam: Procyclic acidic repetitive protein (PARP) [PF05887.13, score=19.5]} {RNA1509_9867} {RNA1310_20135} {RNA815_212.1}
30. MligTC455_06695 4 0.08 Mlig455_042165

Neo: -

Age: -

 MUC4 0.956 - - - - 0.956 - Mlig455_042165 {REF} {Length: 507} {Pfam: NigD-like N-terminal OB domain [PF12667.9, score=23.1]; NUMOD3 motif [PF07460.13, score=19.9]} {Human: ENSG00000278468, MUC4, mucin 4, cell surface associated, [Score=45.8, Expect=1e-05]; ENSG00000277585, MUC4, mucin 4, cell surface associated, [Score=45.8, Expect=1e-05]; ENSG00000276613, MUC4, mucin 4, cell surface associated, [Score=45.4, Expect=1e-05]; ENSG00000273984, MUC4, mucin 4, cell surface associated, [Score=45.4, Expect=1e-05]; ENSG00000273822, MUC4, mucin 4, cell surface associated, [Score=45.4, Expect=1e-05]; ENSG00000145113, MUC4, mucin 4, cell surface associated, [Score=45.4, Expect=1e-05]; ENSG00000278303, MUC4, mucin 4, cell surface associated, [Score=45.4, Expect=1e-05]} {RNA1509_35421} {RNA1310_79093} {RNA815_24569.1}
31. MligTC455_54914 3 0.06 Mlig455_004626

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_004626 {REF} {Length: 27} {TRANSSPLICED} {NoTransDecoderORF}
32. MligTC455_55286 4 0.08 Mlig455_013528

Neo: -

Age: -

 TRHR 0.954 - - - - 0.954 - Mlig455_013528 {REF} {Length: 827} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=105.7]; Serpentine type 7TM GPCR chemoreceptor Srv [PF10323.11, score=24.2]; Serpentine type 7TM GPCR chemoreceptor Srx [PF10328.11, score=20.5]} {Human: ENSG00000174417, TRHR, thyrotropin releasing hormone receptor, [Score=156, Expect=1e-44]} {Mouse: ENSMUSG00000038760, Trhr, thyrotropin releasing hormone receptor, [Score=154, Expect=8e-44]; ENSMUSG00000039079, Trhr2, thyrotropin releasing hormone receptor 2, [Score=150, Expect=1e-42]} {Dmel: FBgn0038874, ETHR, [Score=101, Expect=3e-24]} {Celegans: WBGene00016265, trhr-1, Thyrotropin-Releasing Hormone Receptor, [Score=143, Expect=3e-40]} {Smed: dd_Smed_v6_19246_0_1, dd_Smed_v6_19246_0_1, [Score=157, Expect=5e-46]} {RNA1310_139198}
33. MligTC455_08898 44 0.91 Mlig455_023398, Mlig455_045568

Neo: -

Age: -

 PRR9 0.953 - - - 0.953 - -

Mlig455_023398 {REF} {Length: 1264} {Pfam: Cryptococcal mannosyltransferase 1 [PF11735.10, score=27.2]} {RNA1509_37639} {RNA1310_23440} {RNA815_10032}

Mlig455_045568 {REF} {Length: 8230} {Human: ENSG00000203783, PRR9, proline rich 9, [Score=46.2, Expect=2e-06]} {RNA1509_37639} {RNA1310_23440, RNA1509_37639} {RNA1509_37639, RNA815_10032}
34. MligTC455_51989 2 0.05 Mlig455_051194

Neo: -

Age: Up-Down-Up

 PLEKHG5 0.953 - - - - 0.953 - Mlig455_051194 {REF} {Length: 3355} {Pfam: RhoGEF domain [PF00621.22, score=89.4]} {Human: ENSG00000171680, PLEKHG5, pleckstrin homology and RhoGEF domain containing G5, [Score=139, Expect=1e-33]} {Mouse: ENSMUSG00000039713, Plekhg5, pleckstrin homology domain containing, family G (with RhoGef domain) member 5, [Score=144, Expect=4e-35]} {Dmel: FBgn0261556, CG42674, [Score=148, Expect=1e-36]} {Celegans: WBGene00006476, rhgf-2, RHGF-2; RHo Guanine nucleotide exchange Factor, [Score=81.3, Expect=1e-15]} {Smed: dd_Smed_v6_10072_0_1, dd_Smed_v6_10072_0_1, [Score=117, Expect=3e-27]} {RNA1509_23460} {RNA1310_8231} {RNA815_5839}
35. MligTC455_38108 59 1.23 Mlig455_029176, Mlig455_030240

Neo: -

Age: -

 GABRR2 0.952 - - - 0.952 - -

Mlig455_029176 {REF} {Length: 1196} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=83.5]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=65.2]} {Human: ENSG00000111886, GABRR2, gamma-aminobutyric acid type A receptor rho2 subunit, [Score=152, Expect=1e-40]; ENSG00000145451, GLRA3, glycine receptor alpha 3, [Score=150, Expect=5e-40]} {Mouse: ENSMUSG00000023267, Gabrr2, gamma-aminobutyric acid (GABA) C receptor, subunit rho 2, [Score=148, Expect=2e-39]; ENSMUSG00000038257, Glra3, glycine receptor, alpha 3 subunit, [Score=147, Expect=4e-39]; ENSMUSG00000018595, Glra4, glycine receptor, alpha 4 subunit, [Score=145, Expect=2e-38]; ENSMUSG00000000263, Glra1, glycine receptor, alpha 1 subunit, [Score=145, Expect=1e-38]; ENSMUSG00000018589, Glra2, glycine receptor, alpha 2 subunit, [Score=143, Expect=9e-38]; ENSMUSG00000028280, Gabrr1, gamma-aminobutyric acid (GABA) C receptor, subunit rho 1, [Score=142, Expect=3e-37]} {Dmel: FBgn0024963, GluClalpha, [Score=144, Expect=3e-38]} {Celegans: WBGene00001592, glc-2, Glutamate-gated chloride channel subunit beta, [Score=156, Expect=4e-43]} {Smed: dd_Smed_v6_14811_0_1, dd_Smed_v6_14811_0_1, [Score=186, Expect=2e-54]} {RNA1310_127675}

Mlig455_030240 {REF} {Length: 2005} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=83.5]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=65.2]} {Human: ENSG00000111886, GABRR2, gamma-aminobutyric acid type A receptor rho2 subunit, [Score=152, Expect=1e-40]; ENSG00000145451, GLRA3, glycine receptor alpha 3, [Score=150, Expect=5e-40]} {Mouse: ENSMUSG00000023267, Gabrr2, gamma-aminobutyric acid (GABA) C receptor, subunit rho 2, [Score=148, Expect=2e-39]; ENSMUSG00000038257, Glra3, glycine receptor, alpha 3 subunit, [Score=147, Expect=4e-39]; ENSMUSG00000018595, Glra4, glycine receptor, alpha 4 subunit, [Score=145, Expect=2e-38]; ENSMUSG00000000263, Glra1, glycine receptor, alpha 1 subunit, [Score=145, Expect=1e-38]; ENSMUSG00000018589, Glra2, glycine receptor, alpha 2 subunit, [Score=143, Expect=9e-38]; ENSMUSG00000028280, Gabrr1, gamma-aminobutyric acid (GABA) C receptor, subunit rho 1, [Score=142, Expect=3e-37]} {Dmel: FBgn0024963, GluClalpha, [Score=144, Expect=3e-38]} {Celegans: WBGene00001592, glc-2, Glutamate-gated chloride channel subunit beta, [Score=156, Expect=4e-43]} {Smed: dd_Smed_v6_14811_0_1, dd_Smed_v6_14811_0_1, [Score=186, Expect=2e-54]} {RNA1310_127675} {RNA815_24496}
36. MligTC455_39452 312 6.5 Mlig455_006309, Mlig455_007633, Mlig455_032279, Mlig455_063014, Mlig455_063016

Neo: -

Age: Down-Up-Down

 0.952 - - - - 0.952 -

Mlig455_006309 {REF} {Length: 157} {NoTransDecoderORF} {RNA1509_32997} {RNA1310_7467} {RNA815_50376}

Mlig455_007633 {REF} {Length: 3588} {Pfam: Phage integrase family [PF00589.24, score=23.0]} {RNA1509_4722} {RNA1310_655.1} {RNA815_335.1}

Mlig455_032279 {REF} {Length: 328} {NoTransDecoderORF} {RNA1509_32997} {RNA1310_7467} {RNA815_50376}

Mlig455_063014 {REF} {Length: 3040} {RNA1509_32997} {RNA1310_7467} {RNA815_11709}

Mlig455_063016 {REF} {Length: 346} {NoTransDecoderORF} {RNA1509_32997} {RNA1310_7467} {RNA815_50376}
37. MligTC455_08696 9 0.19 Mlig455_068591

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_068591 {REF} {Length: 89} {NoTransDecoderORF} {RNA1509_22353} {RNA1310_3519} {RNA815_9210.1}
38. MligTC455_37424 15 0.32 Mlig455_026287

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_026287 {REF} {Length: 1087} {RNA1509_43962} {RNA1310_29023} {RNA815_25289}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA