TomoSeq data search

Data search

Results for MligTC455_14218

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_14218

37

0.77

Mlig455_029441, Mlig455_029460

Neo: -

Age: -

Mlig455_029441 {REF} {Length: 2810} {RNA1310_70183}

Mlig455_029460 {REF} {Length: 1628} {RNA1310_70183}

Cumulative graph for MligTC455_14218

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-5.672	1.128	0.99989	1.00000
RegionR2	5.157	1.128	0.08390	0.35575
RegionR3	3.526	1.128	0.09117	0.53275
RegionR4	-2.102	1.128	0.99293	1.00000
RegionR5	-3.375	1.128	0.99919	1.00000
RegionR6	4.031	1.128	0.08762	0.54508
RegionR7	-1.074	1.128	0.99995	1.00000
RegionR8	-0.492	1.128	0.99990	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	6.478	1.128	0.99990	1.00000
RegenerationR2	2.411	1.128	0.14558	0.57727
RegenerationR3	3.099	1.128	0.13426	0.55807
RegenerationR4	3.33	1.128	0.16397	0.59776
RegenerationR5	4.163	1.128	0.06417	0.39998
RegenerationR6	2.919	1.128	0.13450	0.45014
RegenerationBL	0.956	1.128	0.99990	1.00000
RegenerationTP	2.337	1.128	1.00000	1.00000

Genes with expression patterns similar to MligTC455_14218

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_14218	37	0.77	Mlig455_029441, Mlig455_029460	Neo: - Age: -		3	1.000	-	-	-	1.000	1.000	Mlig455_029441 {REF} {Length: 2810} {RNA1310_70183} Mlig455_029460 {REF} {Length: 1628} {RNA1310_70183}
2.	MligTC455_22843	35	0.73	Mlig455_047583, Mlig455_069702	Neo: - Age: Up-Down-Down		1.71	-	-	-	-	0.747	0.963	Mlig455_047583 {REF} {Length: 1867} {Pfam: Lectin C-type domain [PF00059.23, score=31.2]} {RNA1310_65565} {RNA815_34849} Mlig455_069702 {REF} {Length: 2065} {Pfam: Lectin C-type domain [PF00059.23, score=24.8]} {RNA1310_70487} {RNA815_34849}
3.	MligTC455_13739	27	0.57	Mlig455_003060	Neo: - Age: Down-Down-Down, logFC(26M/2M)=-1.158	GLUL	0.98	-	-	-	-	0.980	-	Mlig455_003060 {REF} {Length: 3073} {Pfam: Glutamine synthetase, beta-Grasp domain [PF03951.21, score=49.3]; Glutamine synthetase, catalytic domain [PF00120.26, score=46.0]} {Human: ENSG00000135821, GLUL, glutamate-ammonia ligase, [RH, Score=519, Expect=0.0]} {Mouse: ENSMUSG00000026473, Glul, glutamate-ammonia ligase (glutamine synthetase), [RH, Score=522, Expect=0.0]} {Dmel: FBgn0001145, Gs2, Glutamine synthetase 2, [RH, Score=529, Expect=0.0]} {Celegans: WBGene00001604, gln-3, Glutamine synthetase, [RH, Score=530, Expect=0.0]} {Smed: dd_Smed_v6_646_0_1, dd_Smed_v6_646_0_1, [RH, Score=573, Expect=0.0]} {RNA1509_3029, RNA1509_54181, RNA1509_7928} {RNA1310_32301, RNA1509_3029, RNA1509_54181, RNA1509_7928}
4.	MligTC455_30155	7	0.15	Mlig455_069271	Neo: - Age: -		0.98	-	-	-	-	0.980	-	Mlig455_069271 {REF} {Length: 3746} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=119.8]} {Smed: dd_Smed_v6_26484_0_6, dd_Smed_v6_26484_0_6, [Score=65.1, Expect=3e-12]} {RNA1509_47056} {RNA1310_5710.1, RNA1509_47056} {RNA1509_47056, RNA815_6291.1}
5.	MligTC455_28400	91	1.9	Mlig455_023643	Neo: - Age: Down-Up-Down		0.969	-	-	-	-	-	0.969	Mlig455_023643 {REF} {Length: 1957} {TRANSSPLICED} {Pfam: Ctr copper transporter family [PF04145.17, score=30.8]} {Dmel: FBgn0062413, Ctr1A, Copper transporter 1A, [Score=45.4, Expect=5e-06]} {RNA1509_2913} {RNA1310_42494} {RNA815_39416}
6.	MligTC455_14210	108	2.25	Mlig455_060739	Neo: Int S/G2/M Age: Down-Up-Down		0.967	-	-	-	-	-	0.967	Mlig455_060739 {REF} {Length: 1276} {RNA1509_42122} {RNA1310_19443} {RNA815_21271}
7.	MligTC455_08374	6	0.13	Mlig455_067349	Neo: - Age: -		0.965	-	-	-	-	0.965	-	Mlig455_067349 {REF} {Length: 119} {NoTransDecoderORF} {RNA1310_62433} {RNA815_41961}
8.	MligTC455_11137	65	1.36	Mlig455_007742	Neo: - Age: -	FAT1	0.959	-	-	-	-	-	0.959	Mlig455_007742 {REF} {Length: 4301} {Pfam: Cadherin domain [PF00028.19, score=102.1]; EGF-like domain [PF00008.29, score=51.2]; Calcium-binding EGF domain [PF07645.17, score=33.3]} {Human: ENSG00000083857, FAT1, FAT atypical cadherin 1, [Score=207, Expect=2e-53]; ENSG00000165323, FAT3, FAT atypical cadherin 3, [Score=205, Expect=1e-52]; ENSG00000282908, FAT3, FAT atypical cadherin 3, [Score=205, Expect=1e-52]} {Mouse: ENSMUSG00000070047, Fat1, FAT atypical cadherin 1, [Score=212, Expect=5e-55]; ENSMUSG00000074505, Fat3, FAT atypical cadherin 3, [Score=210, Expect=2e-54]} {Dmel: FBgn0261574, kug, kugelei, [Score=155, Expect=9e-38]} {Celegans: WBGene00000396, cdh-4, Cadherin-4, [Score=121, Expect=2e-27]} {Smed: dd_Smed_v6_7638_0_1, dd_Smed_v6_7638_0_1, [Score=161, Expect=1e-39]} {RNA1509_55673} {RNA1310_45646} {RNA815_38697}
9.	MligTC455_14874	161	3.35	Mlig455_029824	Neo: - Age: - Region-enriched R2: 7.222/0.00004	CALM3	0.959	-	-	-	-	-	0.959	Mlig455_029824 {REF} {Length: 1110} {Pfam: EF hand [PF00036.34, score=94.5]; EF-hand domain pair [PF13499.8, score=87.3]; EF-hand domain pair [PF13833.8, score=80.3]; EF-hand domain [PF13405.8, score=73.9]; EF hand [PF13202.8, score=62.9]; EF-hand domain [PF14658.8, score=36.9]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=27.6]; EF-hand domain [PF08976.13, score=22.5]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=19.8]; Ca2+ insensitive EF hand [PF08726.12, score=18.7]} {Human: ENSG00000160014, CALM3, calmodulin 3, [Score=130, Expect=1e-38]; ENSG00000198668, CALM1, calmodulin 1, [Score=130, Expect=1e-38]; ENSG00000143933, CALM2, calmodulin 2, [Score=130, Expect=1e-38]} {Mouse: ENSMUSG00000019370, Calm3, calmodulin 3, [Score=130, Expect=9e-39]; ENSMUSG00000001175, Calm1, calmodulin 1, [Score=130, Expect=9e-39]; ENSMUSG00000036438, Calm2, calmodulin 2, [Score=130, Expect=9e-39]; ENSMUSG00000063130, Calml3, calmodulin-like 3, [Score=127, Expect=1e-37]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=128, Expect=3e-38]} {Celegans: WBGene00000552, cmd-1, Calmodulin, [Score=128, Expect=2e-38]} {Smed: dd_Smed_v6_414_0_1, dd_Smed_v6_414_0_1, [Score=128, Expect=2e-38]} {RNA1310_51975.1} {RNA815_24980}
10.	MligTC455_10121	35	0.73	Mlig455_063072	Neo: - Age: -		0.957	-	-	-	-	-	0.957	Mlig455_063072 {REF} {Length: 984} {RNA1509_30913} {RNA1310_4887.1} {RNA815_17996}
11.	MligTC455_29902	134	2.79	Mlig455_036021	Neo: - Age: Down-Up-Up	MAP3K4	0.956	-	-	-	-	-	0.956	Mlig455_036021 {REF} {Length: 1657} {Pfam: Protein kinase domain [PF00069.27, score=164.6]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=127.0]; Fungal protein kinase [PF17667.3, score=29.9]; Phosphotransferase enzyme family [PF01636.25, score=20.6]; ABC1 atypical kinase-like domain [PF03109.18, score=20.2]; Kinase-like [PF14531.8, score=18.2]} {Human: ENSG00000085511, MAP3K4, mitogen-activated protein kinase kinase kinase 4, [Score=130, Expect=1e-32]} {Mouse: ENSMUSG00000014426, Map3k4, mitogen-activated protein kinase kinase kinase 4, [Score=126, Expect=3e-31]; ENSMUSG00000028862, Map3k6, mitogen-activated protein kinase kinase kinase 6, [Score=125, Expect=7e-31]; ENSMUSG00000071369, Map3k5, mitogen-activated protein kinase kinase kinase 5, [Score=122, Expect=5e-30]; ENSMUSG00000031303, Map3k15, mitogen-activated protein kinase kinase kinase 15, [Score=122, Expect=5e-30]} {Dmel: FBgn0024329, Mekk1, [Score=127, Expect=7e-32]} {Celegans: WBGene00003472, mtk-1, MTK1/MEKK4 homolog, [Score=135, Expect=8e-35]} {Smed: dd_Smed_v6_4849_0_1, dd_Smed_v6_4849_0_1, [Score=113, Expect=4e-27]} {RNA1509_43621} {RNA1310_32013} {RNA815_6977.1}
12.	MligTC455_38257	159	3.31	Mlig455_012808, Mlig455_047421, Mlig455_070483	Neo: - Age: -		0.956	-	-	-	-	-	0.956	Mlig455_012808 {REF} {Length: 4065} {RNA1310_64880} Mlig455_047421 {REF} {Length: 6870} {RNA1509_15668} {RNA1310_64880} {RNA815_39775} Mlig455_070483 {REF} {Length: 3618} {RNA1310_64880}
13.	MligTC455_32401	14	0.29	Mlig455_041339, Mlig455_045291	Neo: - Age: -	RTL1	0.953	-	-	-	-	0.953	-	Mlig455_041339 {REF} {Length: 1735} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=26.5]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=62.4, Expect=7e-11]} {RNA1509_23603} {RNA1310_89790} {RNA815_27316} Mlig455_045291 {REF} {Length: 4056} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=113.3]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=112.8]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=94.5]; Integrase zinc binding domain [PF17921.3, score=59.2]; Integrase core domain [PF00665.28, score=34.3]; H2C2 zinc finger [PF09337.12, score=27.4]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=118, Expect=3e-26]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=400, Expect=6e-123]} {RNA1509_23603} {RNA1310_89790} {RNA815_8663}
14.	MligTC455_19982	171	3.57	Mlig455_040004	Neo: - Age: -	SH3PXD2A	0.952	-	-	-	-	-	0.952	Mlig455_040004 {REF} {Length: 1905} {TRANSSPLICED} {Pfam: PX domain [PF00787.26, score=53.5]; Variant SH3 domain [PF14604.8, score=24.8]; Variant SH3 domain [PF07653.19, score=21.9]} {Human: ENSG00000107957, SH3PXD2A, SH3 and PX domains 2A, [RH, Score=131, Expect=2e-32]; ENSG00000174705, SH3PXD2B, SH3 and PX domains 2B, [RH, Score=128, Expect=2e-31]} {Mouse: ENSMUSG00000053617, Sh3pxd2a, SH3 and PX domains 2A, [RH, Score=130, Expect=5e-32]; ENSMUSG00000040711, Sh3pxd2b, SH3 and PX domains 2B, [RH, Score=129, Expect=9e-32]} {RNA1509_20826} {RNA1310_30403} {RNA815_36408}
15.	MligTC455_02593	58	1.21	Mlig455_067504	Neo: - Age: logFC(26M/2M)=-0.359	MX2	0.951	-	-	-	-	-	0.951	Mlig455_067504 {REF} {Length: 3763} {Pfam: Dynamin central region [PF01031.22, score=149.9]; Dynamin family [PF00350.25, score=124.7]; Dynamin GTPase effector domain [PF02212.20, score=53.5]; 50S ribosome-binding GTPase [PF01926.25, score=23.7]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=22.7]; AAA ATPase domain [PF13175.8, score=22.5]} {Human: ENSG00000183486, MX2, MX dynamin like GTPase 2, [RH, Score=347, Expect=1e-107]; ENSG00000157601, MX1, MX dynamin like GTPase 1, [RH, Score=333, Expect=1e-102]} {Mouse: ENSMUSG00000023341, Mx2, MX dynamin-like GTPase 2, [RH, Score=339, Expect=2e-105]} {Dmel: FBgn0003392, shi, shibire, [Score=154, Expect=3e-38]} {Celegans: WBGene00001130, dyn-1, Dynamin, [Score=166, Expect=3e-42]} {Smed: dd_Smed_v6_6863_0_4, dd_Smed_v6_6863_0_4, [Score=164, Expect=7e-42]} {RNA1509_52436} {RNA1310_1482.1} {RNA815_3194}
16.	MligTC455_39406	44	0.92	Mlig455_026121	Neo: - Age: Up-Down-Down	RBMS1	0.95	-	-	-	-	0.950	-	Mlig455_026121 {REF} {Length: 2550} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=40.0]} {Human: ENSG00000153250, RBMS1, RNA binding motif single stranded interacting protein 1, [Score=106, Expect=1e-24]; ENSG00000144642, RBMS3, RNA binding motif single stranded interacting protein 3, [Score=102, Expect=5e-23]; ENSG00000076067, RBMS2, RNA binding motif single stranded interacting protein 2, [Score=102, Expect=4e-23]} {Mouse: ENSMUSG00000026970, Rbms1, RNA binding motif, single stranded interacting protein 1, [Score=110, Expect=4e-26]} {Dmel: FBgn0052423, shep, alan shepard, [Score=84.7, Expect=3e-17]} {Celegans: WBGene00006331, sup-26, SUPpressor, [Score=100, Expect=9e-23]} {Smed: dd_Smed_v6_3832_0_1, dd_Smed_v6_3832_0_1, [RH, Score=105, Expect=9e-25]} {RNA1310_39053} {RNA815_20087}

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