M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_13739

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_13739 27 0.57 Mlig455_003060

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-1.158

 GLUL Mlig455_003060 {REF} {Length: 3073} {Pfam: Glutamine synthetase, beta-Grasp domain [PF03951.21, score=49.3]; Glutamine synthetase, catalytic domain [PF00120.26, score=46.0]} {Human: ENSG00000135821, GLUL, glutamate-ammonia ligase, [RH, Score=519, Expect=0.0]} {Mouse: ENSMUSG00000026473, Glul, glutamate-ammonia ligase (glutamine synthetase), [RH, Score=522, Expect=0.0]} {Dmel: FBgn0001145, Gs2, Glutamine synthetase 2, [RH, Score=529, Expect=0.0]} {Celegans: WBGene00001604, gln-3, Glutamine synthetase, [RH, Score=530, Expect=0.0]} {Smed: dd_Smed_v6_646_0_1, dd_Smed_v6_646_0_1, [RH, Score=573, Expect=0.0]} {RNA1509_3029, RNA1509_54181, RNA1509_7928} {RNA1310_32301, RNA1509_3029, RNA1509_54181, RNA1509_7928}

Cumulative graph for MligTC455_13739

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.962 1.041 1.00000 1.00000
RegionR2 2.379 1.041 0.36383 0.75843
RegionR3 1.494 1.041 0.42347 0.94563
RegionR4 1.009 1.041 0.51639 0.84195
RegionR5 1.955 1.041 0.31056 0.64930
RegionR6 -2.483 1.041 1.00000 1.00000
RegionR7 -1.726 1.041 1.00000 1.00000
RegionR8 -1.667 1.041 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.053 1.041 1.00000 1.00000
RegenerationR2 -1.871 1.041 0.46334 0.85418
RegenerationR3 0.789 1.041 0.82701 0.98991
RegenerationR4 -0.005 1.041 0.92441 1.00000
RegenerationR5 -0.969 1.041 0.75365 0.97283
RegenerationR6 2.708 1.041 0.34652 0.69193
RegenerationBL 5.341 1.041 0.07349 0.31628
RegenerationTP 3.882 1.041 0.32022 0.76504


Genes with expression patterns similar to MligTC455_13739

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_13739 27 0.57 Mlig455_003060

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-1.158

 GLUL 3 - - 1.000 - 1.000 1.000 Mlig455_003060 {REF} {Length: 3073} {Pfam: Glutamine synthetase, beta-Grasp domain [PF03951.21, score=49.3]; Glutamine synthetase, catalytic domain [PF00120.26, score=46.0]} {Human: ENSG00000135821, GLUL, glutamate-ammonia ligase, [RH, Score=519, Expect=0.0]} {Mouse: ENSMUSG00000026473, Glul, glutamate-ammonia ligase (glutamine synthetase), [RH, Score=522, Expect=0.0]} {Dmel: FBgn0001145, Gs2, Glutamine synthetase 2, [RH, Score=529, Expect=0.0]} {Celegans: WBGene00001604, gln-3, Glutamine synthetase, [RH, Score=530, Expect=0.0]} {Smed: dd_Smed_v6_646_0_1, dd_Smed_v6_646_0_1, [RH, Score=573, Expect=0.0]} {RNA1509_3029, RNA1509_54181, RNA1509_7928} {RNA1310_32301, RNA1509_3029, RNA1509_54181, RNA1509_7928}
2. MligTC455_10153 61 1.27 Mlig455_068250, Mlig455_068270

Neo: -

Age: -

 ERBB4 1.789 - - 0.957 - 0.832 -

Mlig455_068250 {REF} {Length: 5331} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=269.3]; Protein kinase domain [PF00069.27, score=110.9]; Receptor L domain [PF01030.26, score=51.2]; Growth factor receptor domain IV [PF14843.8, score=47.2]; Furin-like cysteine rich region [PF00757.22, score=45.7]} {Human: ENSG00000178568, ERBB4, erb-b2 receptor tyrosine kinase 4, [Score=307, Expect=1e-85]; ENSG00000146648, EGFR, epidermal growth factor receptor, [Score=296, Expect=1e-82]} {Mouse: ENSMUSG00000062209, Erbb4, erb-b2 receptor tyrosine kinase 4, [Score=309, Expect=2e-86]; ENSMUSG00000020122, Egfr, epidermal growth factor receptor, [Score=295, Expect=4e-82]} {Dmel: FBgn0003731, Egfr, Epidermal growth factor receptor, [Score=311, Expect=7e-87]} {Celegans: WBGene00002299, let-23, Receptor tyrosine-protein kinase let-23, [Score=209, Expect=2e-54]} {Smed: dd_Smed_v6_11310_0_1, dd_Smed_v6_11310_0_1, [Score=303, Expect=3e-84]} {RNA1509_1271} {RNA1310_65071} {RNA815_42809}

Mlig455_068270 {REF} {Length: 5369} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=271.6]; Protein kinase domain [PF00069.27, score=111.6]} {Human: ENSG00000178568, ERBB4, erb-b2 receptor tyrosine kinase 4, [Score=303, Expect=3e-89]; ENSG00000146648, EGFR, epidermal growth factor receptor, [Score=293, Expect=7e-86]} {Mouse: ENSMUSG00000062209, Erbb4, erb-b2 receptor tyrosine kinase 4, [Score=305, Expect=4e-90]; ENSMUSG00000020122, Egfr, epidermal growth factor receptor, [Score=291, Expect=2e-85]} {Dmel: FBgn0003731, Egfr, Epidermal growth factor receptor, [Score=288, Expect=5e-84]} {Celegans: WBGene00002299, let-23, Receptor tyrosine-protein kinase let-23, [Score=207, Expect=3e-56]} {Smed: dd_Smed_v6_11310_0_1, dd_Smed_v6_11310_0_1, [Score=300, Expect=5e-88]} {RNA1509_1271} {RNA1310_65071} {RNA815_42809}
3. MligTC455_53734 59 1.23 Mlig455_055711

Neo: -

Age: -

 1.705 - - - - 0.745 0.960 Mlig455_055711 {REF} {Length: 2272} {RNA1509_48475} {RNA1310_18466} {RNA815_22605}
4. MligTC455_11808 21 0.44 Mlig455_048904

Neo: -

Age: -

 MAP2 1.661 - - 0.708 - 0.953 - Mlig455_048904 {REF} {Length: 1147} {Pfam: Tau and MAP protein, tubulin-binding repeat [PF00418.21, score=156.4]} {Human: ENSG00000078018, MAP2, microtubule associated protein 2, [Score=96.7, Expect=2e-23]} {Mouse: ENSMUSG00000015222, Map2, microtubule-associated protein 2, [Score=96.3, Expect=2e-23]; ENSMUSG00000032479, Map4, microtubule-associated protein 4, [Score=91.7, Expect=2e-22]} {Dmel: FBgn0266579, tau, [Score=112, Expect=2e-30]} {Celegans: WBGene00004212, ptl-1, Microtubule-associated protein, [Score=110, Expect=5e-29]} {Smed: dd_Smed_v6_7133_0_2, dd_Smed_v6_7133_0_2, [Score=95.5, Expect=5e-24]} {RNA1310_139049}
5. MligTC455_41376 50 1.04 Mlig455_057140

Neo: -

Age: Up-Down-Up

 EGR1 0.996 - - 0.996 - - - Mlig455_057140 {REF} {Length: 3119} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=51.7]; Zinc-finger double domain [PF13465.8, score=50.3]; C2H2-type zinc finger [PF13894.8, score=38.1]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=23.3]; C2H2-type zinc finger [PF13912.8, score=21.2]} {Human: ENSG00000120738, EGR1, early growth response 1, [Score=159, Expect=3e-42]; ENSG00000179388, EGR3, early growth response 3, [Score=154, Expect=8e-42]} {Mouse: ENSMUSG00000038418, Egr1, early growth response 1, [Score=159, Expect=2e-42]; ENSMUSG00000033730, Egr3, early growth response 3, [Score=154, Expect=6e-42]} {Dmel: FBgn0003499, sr, stripe, [Score=159, Expect=2e-41]} {Celegans: WBGene00043705, egrh-2, EGR (Early Growth factor Response factor) Homolog, [Score=139, Expect=3e-39]} {Smed: dd_Smed_v6_7091_0_1, dd_Smed_v6_7091_0_1, [Score=132, Expect=4e-34]} {RNA1509_44884} {RNA1310_48721} {RNA815_42057}
6. MligTC455_30549 112 2.32 Mlig455_018692

Neo: -

Age: -

 0.994 - - 0.994 - - - Mlig455_018692 {REF} {Length: 1400} {NoTransDecoderORF} {RNA1509_40709} {RNA1310_18972} {RNA815_34163}
7. MligTC455_15080 83 1.73 Mlig455_033906, Mlig455_033928

Neo: -

Age: -

 0.991 - - 0.991 - - -

Mlig455_033906 {REF} {Length: 664} {NoTransDecoderORF}

Mlig455_033928 {REF} {Length: 607}
8. MligTC455_13928 20 0.42 Mlig455_021798

Neo: -

Age: -

 ASCL5 0.99 - - 0.990 - - - Mlig455_021798 {REF} {Length: 1778} {TRANSSPLICED} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=57.9]} {Human: ENSG00000232237, ASCL5, achaete-scute family bHLH transcription factor 5, [RH, Score=68.2, Expect=3e-14]; ENSG00000187855, ASCL4, achaete-scute family bHLH transcription factor 4, [RH, Score=67.0, Expect=5e-14]; ENSG00000176009, ASCL3, achaete-scute family bHLH transcription factor 3, [RH, Score=65.1, Expect=3e-13]} {Mouse: ENSMUSG00000035951, Ascl3, achaete-scute family bHLH transcription factor 3, [RH, Score=67.8, Expect=2e-14]; ENSMUSG00000097918, Ascl5, achaete-scute family bHLH transcription factor 5, [RH, Score=64.7, Expect=3e-13]} {Dmel: FBgn0004170, sc, scute, [RH, Score=67.8, Expect=9e-14]} {Celegans: WBGene00001952, hlh-6, Helix-loop-helix protein 6, [Score=57.8, Expect=2e-10]} {Smed: dd_Smed_v6_1854_0_1, dd_Smed_v6_1854_0_1, [Score=72.4, Expect=5e-17]} {RNA1509_26675} {RNA1310_40247} {RNA815_47719.2}
9. MligTC455_29656 41 0.86 Mlig455_046542

Neo: -

Age: -

 0.982 - - 0.982 - - - Mlig455_046542 {REF} {Length: 1535} {NoTransDecoderORF} {RNA1509_25000} {RNA1310_13919} {RNA815_45503.2}
10. MligTC455_39406 44 0.92 Mlig455_026121

Neo: -

Age: Up-Down-Down

 RBMS1 0.982 - - - - 0.982 - Mlig455_026121 {REF} {Length: 2550} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=40.0]} {Human: ENSG00000153250, RBMS1, RNA binding motif single stranded interacting protein 1, [Score=106, Expect=1e-24]; ENSG00000144642, RBMS3, RNA binding motif single stranded interacting protein 3, [Score=102, Expect=5e-23]; ENSG00000076067, RBMS2, RNA binding motif single stranded interacting protein 2, [Score=102, Expect=4e-23]} {Mouse: ENSMUSG00000026970, Rbms1, RNA binding motif, single stranded interacting protein 1, [Score=110, Expect=4e-26]} {Dmel: FBgn0052423, shep, alan shepard, [Score=84.7, Expect=3e-17]} {Celegans: WBGene00006331, sup-26, SUPpressor, [Score=100, Expect=9e-23]} {Smed: dd_Smed_v6_3832_0_1, dd_Smed_v6_3832_0_1, [RH, Score=105, Expect=9e-25]} {RNA1310_39053} {RNA815_20087}
11. MligTC455_14218 37 0.77 Mlig455_029441, Mlig455_029460

Neo: -

Age: -

 0.98 - - - - 0.980 -

Mlig455_029441 {REF} {Length: 2810} {RNA1310_70183}

Mlig455_029460 {REF} {Length: 1628} {RNA1310_70183}
12. MligTC455_21498 17 0.36 Mlig455_020602

Neo: -

Age: -

 GRIK2 0.98 - - 0.980 - - - Mlig455_020602 {REF} {Length: 2918} {Pfam: Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=41.1]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=36.9]} {Human: ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=65.1, Expect=2e-10]; ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=63.5, Expect=5e-10]} {Mouse: ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=65.5, Expect=9e-11]; ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=63.5, Expect=3e-10]} {Dmel: FBgn0004620, GluRIIA, Glutamate receptor IIA, [Score=54.7, Expect=1e-07]} {Celegans: WBGene00001615, glr-4, GLutamate Receptor family (AMPA), [Score=51.2, Expect=1e-06]} {Smed: dd_Smed_v6_20242_0_1, dd_Smed_v6_20242_0_1, [Score=51.2, Expect=1e-06]} {RNA1310_56126} {RNA815_40955}
13. MligTC455_30155 7 0.15 Mlig455_069271

Neo: -

Age: -

 0.98 - - - - 0.980 - Mlig455_069271 {REF} {Length: 3746} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=119.8]} {Smed: dd_Smed_v6_26484_0_6, dd_Smed_v6_26484_0_6, [Score=65.1, Expect=3e-12]} {RNA1509_47056} {RNA1310_5710.1, RNA1509_47056} {RNA1509_47056, RNA815_6291.1}
14. MligTC455_31046 12 0.25 Mlig455_054928

Neo: -

Age: -

 LRRN3 0.98 - - 0.980 - - - Mlig455_054928 {REF} {Length: 3787} {Pfam: Immunoglobulin domain [PF13927.8, score=35.6]; Immunoglobulin I-set domain [PF07679.18, score=34.7]; Immunoglobulin domain [PF00047.27, score=29.3]; Apolipoprotein A1/A4/E domain [PF01442.20, score=20.1]} {Human: ENSG00000173114, LRRN3, leucine rich repeat neuronal 3, [Score=53.5, Expect=1e-06]} {Dmel: FBgn0032479, CG16974, [RH, Score=114, Expect=1e-25]} {RNA1509_10344} {RNA1310_3046.1} {RNA815_12103}
15. MligTC455_41126 619 12.9 Mlig455_050185

Neo: -

Age: -

Region-enriched R6: 3.273/0.00035

 0.977 - - - - 0.977 - Mlig455_050185 {REF} {Length: 671} {RNA1509_36640} {RNA1310_51392} {RNA815_51264}
16. MligTC455_47642 97 2.02 Mlig455_036511

Neo: -

Age: -

 0.976 - - 0.976 - - - Mlig455_036511 {REF} {Length: 2030} {RNA1509_55500} {RNA1310_26431} {RNA815_24412}
17. MligTC455_25786 72 1.5 Mlig455_040831

Neo: -

Age: -

Region-enriched R4: 4.547/0.02758

 PHKG1 0.975 - - 0.975 - - - Mlig455_040831 {REF} {Length: 3417} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=243.7]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=114.0]; Kinase-like [PF14531.8, score=25.6]; Haspin like kinase domain [PF12330.10, score=24.4]; Phosphotransferase enzyme family [PF01636.25, score=19.7]; Fungal protein kinase [PF17667.3, score=19.4]; Lipopolysaccharide kinase (Kdo/WaaP) family [PF06293.16, score=18.2]} {Human: ENSG00000164776, PHKG1, phosphorylase kinase catalytic subunit gamma 1, [RH, Score=372, Expect=5e-127]; ENSG00000156873, PHKG2, phosphorylase kinase catalytic subunit gamma 2, [RH, Score=361, Expect=2e-122]} {Mouse: ENSMUSG00000025537, Phkg1, phosphorylase kinase gamma 1, [RH, Score=365, Expect=2e-124]; ENSMUSG00000030815, Phkg2, phosphorylase kinase, gamma 2 (testis), [RH, Score=363, Expect=1e-123]} {Dmel: FBgn0011754, PhKgamma, Phosphorylase kinase gamma, [RH, Score=385, Expect=2e-132]} {Celegans: WBGene00021753, Y50D7A.3, [RH, Score=314, Expect=2e-103]} {Smed: dd_Smed_v6_7480_0_2, dd_Smed_v6_7480_0_2, [Score=218, Expect=5e-66]} {RNA1509_58909} {RNA1310_10334.1, RNA1509_58909} {RNA1509_58909, RNA815_18526}
18. MligTC455_41125 1467 30.56 Mlig455_023570, Mlig455_066989

Neo: -

Age: -

Region-enriched R6: 2.886/0.00252

 MUC22 0.974 - - - - 0.974 -

Mlig455_023570 {REF} {Length: 1213} {Human: ENSG00000261272, MUC22, mucin 22, [Score=62.8, Expect=6e-11]} {RNA1509_36640} {RNA1310_51392} {RNA815_51264}

Mlig455_066989 {REF} {Length: 1093} {Human: ENSG00000261272, MUC22, mucin 22, [Score=55.8, Expect=5e-09]} {RNA1509_36640} {RNA1310_51392} {RNA815_51264}
19. MligTC455_39939 498 10.37 Mlig455_023795, Mlig455_066344

Neo: Int S/G2/M

Age: -

Region-enriched R2: 2.254/0.04221

 IMPAD1 0.971 - - 0.971 - - -

Mlig455_023795 {REF} {Length: 5670} {TRANSSPLICED} {Pfam: Inositol monophosphatase family [PF00459.27, score=125.0]; GWT1 [PF06423.14, score=63.5]; GlcNAc-PI de-N-acetylase [PF02585.19, score=59.3]} {Human: ENSG00000104331, IMPAD1, inositol monophosphatase domain containing 1, [RH, Score=154, Expect=3e-40]} {Mouse: ENSMUSG00000066324, Impad1, inositol monophosphatase domain containing 1, [RH, Score=151, Expect=2e-39]} {Dmel: FBgn0030465, CG15743, [RH, Score=168, Expect=2e-45]} {Celegans: WBGene00022447, hpo-20, Phosphatidylinositol-glycan biosynthesis class W protein, [RH, Score=143, Expect=6e-36]} {Smed: dd_Smed_v6_9579_0_1, dd_Smed_v6_9579_0_1, [RH, Score=135, Expect=8e-34]} {RNA1509_37543, RNA1509_48069} {RNA1310_8844, RNA1509_48069} {RNA1509_48069, RNA815_11962}

Mlig455_066344 {REF} {Length: 4479} {TRANSSPLICED} {Pfam: Inositol monophosphatase family [PF00459.27, score=125.4]; GWT1 [PF06423.14, score=63.6]; GlcNAc-PI de-N-acetylase [PF02585.19, score=59.1]} {Human: ENSG00000104331, IMPAD1, inositol monophosphatase domain containing 1, [RH, Score=152, Expect=2e-39]} {Mouse: ENSMUSG00000066324, Impad1, inositol monophosphatase domain containing 1, [RH, Score=148, Expect=1e-38]} {Dmel: FBgn0030465, CG15743, [RH, Score=165, Expect=2e-44]} {Celegans: WBGene00022447, hpo-20, Phosphatidylinositol-glycan biosynthesis class W protein, [RH, Score=143, Expect=8e-36]} {Smed: dd_Smed_v6_9579_0_1, dd_Smed_v6_9579_0_1, [RH, Score=136, Expect=4e-34]} {RNA1509_37543} {RNA1310_8844} {RNA815_11962}
20. MligTC455_44868 14 0.3 Mlig455_051869, Mlig455_053148

Neo: -

Age: -

 CALM1, CALM2 0.969 - - 0.969 - - -

Mlig455_051869 {REF} {Length: 320} {Pfam: EF hand [PF00036.34, score=79.1]; EF-hand domain pair [PF13499.8, score=77.0]; EF-hand domain pair [PF13833.8, score=75.0]; EF hand [PF13202.8, score=66.9]; EF-hand domain [PF13405.8, score=65.8]; EF-hand domain [PF14658.8, score=30.2]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=23.1]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=21.9]} {Human: ENSG00000143933, CALM2, calmodulin 2, [Score=103, Expect=1e-28]; ENSG00000198668, CALM1, calmodulin 1, [Score=102, Expect=3e-29]; ENSG00000160014, CALM3, calmodulin 3, [Score=102, Expect=3e-29]} {Mouse: ENSMUSG00000036438, Calm2, calmodulin 2, [Score=102, Expect=2e-29]; ENSMUSG00000001175, Calm1, calmodulin 1, [Score=102, Expect=6e-29]; ENSMUSG00000019370, Calm3, calmodulin 3, [Score=102, Expect=6e-29]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=103, Expect=3e-29]} {Celegans: WBGene00000552, cmd-1, Calmodulin, [Score=102, Expect=9e-30]} {Smed: dd_Smed_v6_414_0_1, dd_Smed_v6_414_0_1, [Score=102, Expect=2e-29]} {RNA1509_22382} {RNA1310_25980} {RNA815_41318}

Mlig455_053148 {REF} {Length: 916} {Pfam: EF-hand domain pair [PF13499.8, score=114.2]; EF hand [PF00036.34, score=114.0]; EF-hand domain [PF13405.8, score=97.8]; EF-hand domain pair [PF13833.8, score=92.0]; EF hand [PF13202.8, score=81.7]; EF-hand domain [PF14658.8, score=53.8]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=32.9]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=27.7]; Caleosin related protein [PF05042.15, score=27.0]; Tellurite resistance protein TerB [PF05099.15, score=19.6]} {Human: ENSG00000198668, CALM1, calmodulin 1, [Score=172, Expect=2e-55]; ENSG00000160014, CALM3, calmodulin 3, [Score=172, Expect=2e-55]; ENSG00000143933, CALM2, calmodulin 2, [Score=172, Expect=2e-55]} {Mouse: ENSMUSG00000019370, Calm3, calmodulin 3, [Score=172, Expect=1e-55]; ENSMUSG00000001175, Calm1, calmodulin 1, [Score=172, Expect=1e-55]; ENSMUSG00000036438, Calm2, calmodulin 2, [Score=172, Expect=1e-55]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=172, Expect=5e-56]} {Celegans: WBGene00000552, cmd-1, Calmodulin, [Score=172, Expect=4e-56]} {Smed: dd_Smed_v6_414_0_1, dd_Smed_v6_414_0_1, [Score=172, Expect=3e-56]} {RNA1509_22382} {RNA1310_25980} {RNA815_41318}
21. MligTC455_00775 4 0.09 Mlig455_060744

Neo: -

Age: -

 0.968 - - - - 0.968 - Mlig455_060744 {REF} {Length: 395} {NoTransDecoderORF}
22. MligTC455_25949 221 4.59 Mlig455_001818, Mlig455_025869, Mlig455_025960, Mlig455_056965, Mlig455_058910

Neo: Int S/G2/M

Age: -

 0.968 - - 0.968 - - -

Mlig455_001818 {REF} {Length: 189} {NoTransDecoderORF} {RNA1310_44928} {RNA815_23085.2}

Mlig455_025869 {REF} {Length: 790} {RNA1310_68154} {RNA815_23085.1}

Mlig455_025960 {REF} {Length: 860} {RNA1310_68154} {RNA815_23085.1}

Mlig455_056965 {REF} {Length: 553} {NoTransDecoderORF} {RNA1509_18737} {RNA1310_24175.1} {RNA815_21371.1}

Mlig455_058910 {REF} {Length: 429} {TRANSSPLICED} {RNA1310_44928} {RNA815_23085.2}
23. MligTC455_25344 27 0.56 Mlig455_003012

Neo: -

Age: -

 0.966 - - 0.966 - - - Mlig455_003012 {REF} {Length: 1967} {TRANSSPLICED} {RNA1310_1626.3} {RNA815_32150}
24. MligTC455_08374 6 0.13 Mlig455_067349

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_067349 {REF} {Length: 119} {NoTransDecoderORF} {RNA1310_62433} {RNA815_41961}
25. MligTC455_21415 38 0.78 Mlig455_030394, Mlig455_069019

Neo: -

Age: Up-Down-Down

 SCN5A 0.964 - - 0.964 - - -

Mlig455_030394 {REF} {Length: 6394} {Pfam: Ion transport protein [PF00520.33, score=542.0]; Polycystin cation channel [PF08016.14, score=81.1]; Voltage-dependent L-type calcium channel, IQ-associated [PF16905.7, score=26.0]} {Human: ENSG00000183873, SCN5A, sodium voltage-gated channel alpha subunit 5, [RH, Score=944, Expect=0.0]; ENSG00000185313, SCN10A, sodium voltage-gated channel alpha subunit 10, [RH, Score=910, Expect=0.0]} {Mouse: ENSMUSG00000032511, Scn5a, sodium channel, voltage-gated, type V, alpha, [RH, Score=942, Expect=0.0]; ENSMUSG00000001027, Scn4a, sodium channel, voltage-gated, type IV, alpha, [RH, Score=932, Expect=0.0]; ENSMUSG00000023033, Scn8a, sodium channel, voltage-gated, type VIII, alpha, [RH, Score=924, Expect=0.0]} {Dmel: FBgn0085434, NaCP60E, Na channel protein 60E, [RH, Score=896, Expect=0.0]} {Celegans: WBGene00001187, egl-19, Voltage-dependent L-type calcium channel subunit alpha, [Score=322, Expect=2e-90]} {Smed: dd_Smed_v6_12243_0_1, dd_Smed_v6_12243_0_1, [Score=1238, Expect=0.0]} {RNA1509_26911} {RNA1310_25124} {RNA815_23541}

Mlig455_069019 {REF} {Length: 6623} {Pfam: Ion transport protein [PF00520.33, score=774.7]; Polycystin cation channel [PF08016.14, score=76.9]; Voltage-dependent L-type calcium channel, IQ-associated [PF16905.7, score=25.2]} {Human: ENSG00000183873, SCN5A, sodium voltage-gated channel alpha subunit 5, [RH, Score=1268, Expect=0.0]; ENSG00000185313, SCN10A, sodium voltage-gated channel alpha subunit 10, [RH, Score=1214, Expect=0.0]} {Mouse: ENSMUSG00000032511, Scn5a, sodium channel, voltage-gated, type V, alpha, [RH, Score=1276, Expect=0.0]} {Dmel: FBgn0085434, NaCP60E, Na channel protein 60E, [RH, Score=899, Expect=0.0]} {Celegans: WBGene00001187, egl-19, Voltage-dependent L-type calcium channel subunit alpha, [Score=322, Expect=9e-89]} {Smed: dd_Smed_v6_12243_0_1, dd_Smed_v6_12243_0_1, [Score=1233, Expect=0.0]} {RNA1509_26911} {RNA1310_25124} {RNA815_23541}
26. MligTC455_27544 39 0.81 Mlig455_032949

Neo: -

Age: -

 TRPM3 0.964 - - - - 0.964 - Mlig455_032949 {REF} {Length: 6125} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=51.9]; Ankyrin repeats (many copies) [PF13637.8, score=39.2]; Ankyrin repeat [PF13606.8, score=30.5]; Ankyrin repeats (many copies) [PF13857.8, score=27.8]; Ankyrin repeat [PF00023.32, score=26.4]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=75.9, Expect=4e-13]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=73.2, Expect=2e-12]} {Celegans: WBGene00001651, gon-2, Transient receptor potential channel, [Score=49.7, Expect=1e-05]} {Smed: dd_Smed_v6_26251_0_1, dd_Smed_v6_26251_0_1, [Score=94.7, Expect=1e-19]} {RNA1509_21241} {RNA1310_1739} {RNA815_2547.1}
27. MligTC455_28270 163 3.39 Mlig455_016340, Mlig455_061673

Neo: -

Age: -

 0.962 - - 0.962 - - -

Mlig455_016340 {REF} {Length: 413} {NoTransDecoderORF} {RNA1509_6891} {RNA1310_55827} {RNA815_63327}

Mlig455_061673 {REF} {Length: 450} {NoTransDecoderORF} {RNA1509_6891} {RNA1310_55827} {RNA815_63327}
28. MligTC455_43141 147 3.07 Mlig455_047586

Neo: -

Age: logFC(26M/2M)=0.637

 GNAS 0.956 - - 0.956 - - - Mlig455_047586 {REF} {Length: 2108} {Pfam: G-protein alpha subunit [PF00503.22, score=344.4]; ADP-ribosylation factor family [PF00025.23, score=59.9]; Gtr1/RagA G protein conserved region [PF04670.14, score=25.0]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=20.2]} {Human: ENSG00000087460, GNAS, GNAS complex locus, [RH, Score=520, Expect=0.0]; ENSG00000141404, GNAL, G protein subunit alpha L, [RH, Score=519, Expect=0.0]} {Mouse: ENSMUSG00000024524, Gnal, guanine nucleotide binding protein, alpha stimulating, olfactory type, [RH, Score=523, Expect=0.0]; ENSMUSG00000027523, Gnas, GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus, [RH, Score=519, Expect=0.0]} {Dmel: FBgn0001123, Galphas, G protein alpha s subunit, [RH, Score=518, Expect=0.0]} {Celegans: WBGene00001745, gsa-1, G protein, Subunit Alpha, [RH, Score=476, Expect=2e-168]} {Smed: dd_Smed_v6_6167_0_1, dd_Smed_v6_6167_0_1, [RH, Score=547, Expect=0.0]} {RNA1509_55942} {RNA1310_13501} {RNA815_7904}
29. MligTC455_33033 68 1.42 Mlig455_023598

Neo: -

Age: Down-Up-Down

 0.951 - - 0.951 - - - Mlig455_023598 {REF} {Length: 727} {NoTransDecoderORF} {RNA1509_44765} {RNA1310_83223} {RNA815_38104}
30. MligTC455_45403 60 1.26 Mlig455_001365

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.466

 SLC6A5 0.95 - - 0.950 - - - Mlig455_001365 {REF} {Length: 6779} {Pfam: Sodium:neurotransmitter symporter family [PF00209.20, score=804.8]} {Human: ENSG00000165970, SLC6A5, solute carrier family 6 member 5, [Score=421, Expect=2e-128]} {Mouse: ENSMUSG00000039728, Slc6a5, solute carrier family 6 (neurotransmitter transporter, glycine), member 5, [Score=423, Expect=4e-129]} {Dmel: FBgn0034911, CG5549, [Score=396, Expect=8e-116]} {Celegans: WBGene00000934, dat-1, Sodium-dependent dopamine transporter, [Score=342, Expect=1e-102]} {Smed: dd_Smed_v6_4290_0_1, dd_Smed_v6_4290_0_1, [Score=389, Expect=9e-120]} {RNA1509_14194} {RNA1310_1653.1} {RNA815_6812}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA