TomoSeq data search

Data search

Results for MligTC455_16213

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_16213

641

13.35

Mlig455_042097

Neo: -

Age: -

Region-enriched R2: 2.338/0.01794

Mlig455_042097 {REF} {Length: 599} {TRANSSPLICED} {RNA1509_10288} {RNA1310_13980} {RNA815_5182.1}

Cumulative graph for MligTC455_16213

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-7.164	3.945	0.03102	0.44893
RegionR2	2.338	3.945	0.00075	0.01794
RegionR3	0.804	3.945	0.34243	0.87850
RegionR4	0.52	3.945	0.58391	0.89987
RegionR5	0.382	3.945	0.65409	1.00000
RegionR6	1.517	3.945	0.02873	0.31203
RegionR7	1.553	3.945	0.04207	0.39392
RegionR8	0.051	3.945	0.83576	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	5.844	3.945	0.22377	0.95604
RegenerationR2	-1.547	3.945	0.00232	0.07263
RegenerationR3	0.133	3.945	0.81124	0.98560
RegenerationR4	0.655	3.945	0.27351	0.71949
RegenerationR5	0.231	3.945	0.67567	0.94317
RegenerationR6	-0.342	3.945	0.53411	0.82956
RegenerationBL	-0.607	3.945	0.33870	0.70524
RegenerationTP	0.321	3.945	0.61936	0.97201

Genes with expression patterns similar to MligTC455_16213

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_16213	641	13.35	Mlig455_042097	Neo: - Age: - Region-enriched R2: 2.338/0.01794		6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_042097 {REF} {Length: 599} {TRANSSPLICED} {RNA1509_10288} {RNA1310_13980} {RNA815_5182.1}
2.	MligTC455_25791	6624	137.99	Mlig455_026535, Mlig455_036977, Mlig455_037651, Mlig455_044767, Mlig455_048877, Mlig455_048885, Mlig455_049562, Mlig455_053664, Mlig455_071136	Neo: - Age: -	NYNRIN	1.813	-	-	-	0.855	-	0.958	Mlig455_026535 {REF} {Length: 632} {RNA1509_22707} {RNA1310_30534} {RNA815_24119.1} Mlig455_036977 {REF} {Length: 962} {NoTransDecoderORF} {RNA1509_22707} {RNA1310_61401.1} {RNA815_24119.1} Mlig455_037651 {REF} {Length: 4197} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=109.5]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=101.1]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=84.7]; Integrase zinc binding domain [PF17921.3, score=60.4]; Integrase core domain [PF00665.28, score=54.2]; gag-polyprotein putative aspartyl protease [PF13975.8, score=25.5]; H2C2 zinc finger [PF09337.12, score=23.0]; Retroviral aspartyl protease [PF00077.22, score=21.5]; Aspartyl protease [PF13650.8, score=20.9]; Integrase core domain [PF13683.8, score=20.6]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=75.9, Expect=5e-13]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=84.3, Expect=7e-16]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=327, Expect=9e-95]} {RNA1509_41126} {RNA1310_3178} {RNA815_4850.1} Mlig455_044767 {REF} {Length: 995} {RNA1509_22707} {RNA1310_30534} {RNA815_24119.1} Mlig455_048877 {REF} {Length: 847} {NoTransDecoderORF} {RNA1509_56606} {RNA1310_61500} {RNA815_24119.2} Mlig455_048885 {REF} {Length: 1005} {RNA1509_56606} {RNA1310_33252.1} {RNA815_24119.1} Mlig455_049562 {REF} {Length: 1289} {NoTransDecoderORF} {RNA1509_22707} {RNA1310_61500} {RNA815_24119.1} Mlig455_053664 {REF} {Length: 994} {RNA1509_22707} {RNA1310_30534} {RNA815_24119.1} Mlig455_071136 {REF} {Length: 1286} {RNA1509_22707} {RNA1310_61500} {RNA815_24119.1}
3.	MligTC455_43427	1427	29.74	Mlig455_013530, Mlig455_013590, Mlig455_061388	Neo: - Age: - Region-enriched R3: 2.137/0.00098		1.743	-	0.790	-	-	-	0.953	Mlig455_013530 {REF} {Length: 948} {RNA1509_9227} {RNA1310_163.1} {RNA815_1571} Mlig455_013590 {REF} {Length: 1013} {RNA1509_9227} {RNA1310_170} {RNA815_1571} Mlig455_061388 {REF} {Length: 960} {RNA1509_9227} {RNA1310_170} {RNA815_1571}
4.	MligTC455_36205	818	17.04	Mlig455_068364	Neo: - Age: logFC(26M/2M)=-0.230	GRIA2	1.666	-	-	-	0.954	0.712	-	Mlig455_068364 {REF} {Length: 2949} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=78.9]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=64.6]; Ligand-gated ion channel [PF00060.28, score=52.3]} {Human: ENSG00000120251, GRIA2, glutamate ionotropic receptor AMPA type subunit 2, [Score=147, Expect=6e-37]; ENSG00000155511, GRIA1, glutamate ionotropic receptor AMPA type subunit 1, [Score=146, Expect=2e-36]} {Mouse: ENSMUSG00000033981, Gria2, glutamate receptor, ionotropic, AMPA2 (alpha 2), [Score=147, Expect=5e-37]; ENSMUSG00000020524, Gria1, glutamate receptor, ionotropic, AMPA1 (alpha 1), [Score=146, Expect=1e-36]} {Dmel: FBgn0038837, CG3822, [Score=145, Expect=2e-36]} {Celegans: WBGene00001613, glr-2, Glutamate receptor 2, [Score=126, Expect=3e-30]} {Smed: dd_Smed_v6_17901_0_1, dd_Smed_v6_17901_0_1, [Score=135, Expect=3e-33]} {RNA1509_11228, RNA1509_38800} {RNA1310_9671.2, RNA1509_38800} {RNA1509_38800, RNA815_3917}
5.	MligTC455_51809	1156	24.09	Mlig455_029569, Mlig455_061527	Neo: - Age: Down-Up-Up, logFC(26M/2M)=1.569 Regeneration-downregulated BL: -2.620 Regeneration-depleted BL: -2.620		0.971	-	-	-	-	-	0.971	Mlig455_029569 {REF} {Length: 1842} {RNA1509_6500} {RNA1310_28860.1} {RNA815_9694} Mlig455_061527 {REF} {Length: 1914} {RNA1509_6500} {RNA1310_28860.1} {RNA815_9694}
6.	MligTC455_51109	497	10.36	Mlig455_025680	Neo: - Age: Up-Down-Down	CACNA2D1	0.966	-	-	-	-	-	0.966	Mlig455_025680 {REF} {Length: 4146} {TRANSSPLICED} {Pfam: Neuronal voltage-dependent calcium channel alpha 2acd [PF08473.13, score=80.6]; VWA N-terminal [PF08399.13, score=59.2]; von Willebrand factor type A domain [PF00092.30, score=41.4]; von Willebrand factor type A domain [PF13519.8, score=34.4]} {Human: ENSG00000153956, CACNA2D1, calcium voltage-gated channel auxiliary subunit alpha2delta 1, [Score=302, Expect=1e-85]} {Mouse: ENSMUSG00000040118, Cacna2d1, calcium channel, voltage-dependent, alpha2/delta subunit 1, [Score=300, Expect=5e-85]} {Dmel: FBgn0261999, CG42817, [Score=166, Expect=4e-41]} {Celegans: WBGene00006772, unc-36, Voltage-dependent calcium channel unc-36, [Score=146, Expect=3e-35]} {Smed: dd_Smed_v6_8926_0_1, dd_Smed_v6_8926_0_1, [Score=104, Expect=2e-22]} {RNA1509_10135} {RNA1310_2055.1, RNA1509_10135} {RNA1509_10135, RNA815_2646}
7.	MligTC455_50710	916	19.08	Mlig455_004973	Neo: Irradiation Age: Down-Down-Up, logFC(26M/2M)=-0.654		0.96	-	-	0.960	-	-	-	Mlig455_004973 {REF} {Length: 2155} {Pfam: HMG (high mobility group) box [PF00505.21, score=25.0]} {RNA1509_8010} {RNA1310_8703} {RNA815_10872}
8.	MligTC455_50711	1833	38.18	Mlig455_004969, Mlig455_046444	Neo: Irradiation Age: Down-Up-Down		0.96	-	-	0.960	-	-	-	Mlig455_004969 {REF} {Length: 2543} {Pfam: HMG (high mobility group) box [PF00505.21, score=32.3]; Anti-sigma-K factor rskA [PF10099.11, score=20.6]} {RNA1509_8010} {RNA1310_8703} {RNA815_10872} Mlig455_046444 {REF} {Length: 2533} {Pfam: HMG (high mobility group) box [PF00505.21, score=32.3]; Anti-sigma-K factor rskA [PF10099.11, score=20.6]} {RNA1509_8010} {RNA1310_8703, RNA1509_8010} {RNA1509_8010, RNA815_10872}
9.	MligTC455_36023	124	2.58	Mlig455_051287	Neo: - Age: -	TRPM3	0.958	-	-	-	-	-	0.958	Mlig455_051287 {REF} {Length: 4788} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=77.0]; Ion transport protein [PF00520.33, score=63.8]; Ankyrin repeats (many copies) [PF13637.8, score=55.2]; Ankyrin repeat [PF00023.32, score=44.1]; Ankyrin repeats (many copies) [PF13857.8, score=42.4]; Ankyrin repeat [PF13606.8, score=30.9]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=152, Expect=2e-36]; ENSG00000274965, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=148, Expect=4e-35]; ENSG00000134160, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=148, Expect=4e-35]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=153, Expect=7e-37]; ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=146, Expect=9e-35]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=129, Expect=1e-29]} {Celegans: WBGene00001796, gtl-2, Gon-Two Like (TRP subfamily), [Score=104, Expect=2e-22]} {Smed: dd_Smed_v6_17981_0_2, dd_Smed_v6_17981_0_2, [Score=195, Expect=3e-50]} {RNA1509_36155} {RNA1310_16055, RNA1509_36155} {RNA1509_36155, RNA815_25933}
10.	MligTC455_48681	294	6.12	Mlig455_051288	Neo: - Age: - Region-enriched R7: 3.136/0.00031		0.958	-	-	-	-	-	0.958	Mlig455_051288 {REF} {Length: 1014} {TRANSSPLICED} {Pfam: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 [PF10473.11, score=18.7]; Intermediate filament protein [PF00038.23, score=18.6]} {RNA1509_35605} {RNA1310_32127, RNA1509_35605} {RNA1509_35605, RNA815_14536}
11.	MligTC455_47335	1032	21.5	Mlig455_062557	Neo: - Age: - Region-enriched R7: 2.603/0.00000	QPCT	0.954	-	-	-	-	-	0.954	Mlig455_062557 {REF} {Length: 3446} {Pfam: Peptidase family M28 [PF04389.19, score=137.0]} {Human: ENSG00000115828, QPCT, glutaminyl-peptide cyclotransferase, [RH, Score=206, Expect=8e-63]} {Mouse: ENSMUSG00000024084, Qpct, glutaminyl-peptide cyclotransferase (glutaminyl cyclase), [RH, Score=205, Expect=9e-63]} {Dmel: FBgn0036999, isoQC, iso Glutaminyl cyclase, [RH, Score=231, Expect=4e-73]} {Celegans: WBGene00010418, H27A22.1, [RH, Score=233, Expect=1e-73]} {Smed: dd_Smed_v6_4861_0_1, dd_Smed_v6_4861_0_1, [RH, Score=229, Expect=2e-72]} {RNA1509_25710, RNA1509_30940, RNA1509_32442, RNA1509_43722, RNA1509_6251} {RNA1310_17611, RNA1509_25710, RNA1509_30940, RNA1509_32442, RNA1509_43722, RNA1509_6251} {RNA1509_25710, RNA1509_30940, RNA1509_32442, RNA1509_43722, RNA1509_6251, RNA815_7821}
12.	MligTC455_34587	784	16.34	Mlig455_055046	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.396	TTN	0.953	0.953	-	-	-	-	-	Mlig455_055046 {REF} {Length: 6522} {Pfam: Immunoglobulin I-set domain [PF07679.18, score=71.1]; Immunoglobulin domain [PF13927.8, score=47.3]; Smoothelin cytoskeleton protein [PF12510.10, score=23.8]; Immunoglobulin V-set domain [PF07686.19, score=21.6]} {Human: ENSG00000155657, TTN, titin, [Score=56.2, Expect=2e-07]} {Mouse: ENSMUSG00000051747, Ttn, titin, [Score=58.5, Expect=2e-08]} {Dmel: FBgn0005666, bt, bent, [Score=63.2, Expect=5e-10]} {Celegans: WBGene00006820, unc-89, Muscle M-line assembly protein unc-89, [Score=59.3, Expect=6e-09]} {Smed: dd_Smed_v6_2544_0_1, dd_Smed_v6_2544_0_1, [Score=55.8, Expect=5e-08]} {RNA1509_3882, RNA1509_56000} {RNA1310_786, RNA1509_56000} {RNA1509_56000, RNA815_238.1}
13.	MligTC455_37645	245	5.11	Mlig455_009094	Neo: - Age: Down-Down-Down, logFC(26M/2M)=-0.736		0.952	-	-	-	-	-	0.952	Mlig455_009094 {REF} {Length: 1970} {RNA1509_21906} {RNA1310_21443.1} {RNA815_8970.1}
14.	MligTC455_37976	287	5.97	Mlig455_057731	Neo: - Age: - Region-enriched R2: 2.845/0.00394		0.952	-	-	-	-	-	0.952	Mlig455_057731 {REF} {Length: 459} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_49031} {RNA1310_23076.1} {RNA815_54937}
15.	MligTC455_45987	1592	33.17	Mlig455_024379, Mlig455_024495	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.664 Region-specific R8: 3.405 Region-enriched R8: 3.716/0.00000 Region-enriched R7: 2.383/0.00000 Regeneration-depleted BL: -2.612 Regeneration-depleted TP: -2.566	PKDREJ	0.952	-	-	-	-	-	0.952	Mlig455_024379 {REF} {Length: 9101} {Pfam: PKD domain [PF18911.2, score=34.9]; PKD domain [PF00801.22, score=21.5]} {RNA1509_1257} {RNA1310_126.1} {RNA815_58} Mlig455_024495 {REF} {Length: 8484} {Pfam: Polycystin cation channel [PF08016.14, score=333.9]; PLAT/LH2 domain [PF01477.25, score=69.5]; PKD domain [PF18911.2, score=32.8]; Ion transport protein [PF00520.33, score=31.6]; PKD domain [PF00801.22, score=19.8]} {Human: ENSG00000130943, PKDREJ, polycystin family receptor for egg jelly, [RH, Score=346, Expect=8e-95]} {Mouse: ENSMUSG00000052496, Pkdrej, polycystin (PKD) family receptor for egg jelly, [RH, Score=327, Expect=4e-89]; ENSMUSG00000034416, Pkd1l2, polycystic kidney disease 1 like 2, [RH, Score=319, Expect=7e-87]} {Dmel: FBgn0041195, Pkd2, Polycystic kidney disease 2, [Score=167, Expect=3e-41]} {Celegans: WBGene00004035, pkd-2, Polycystin-2, [Score=198, Expect=3e-52]} {Smed: dd_Smed_v6_10962_0_1, dd_Smed_v6_10962_0_1, [Score=592, Expect=9e-172]} {RNA1509_1257} {RNA1310_126.1} {RNA815_58}
16.	MligTC455_32598	616	12.83	Mlig455_005315	Neo: - Age: logFC(26M/2M)=0.585	MAN2B1	0.95	-	-	-	-	-	0.950	Mlig455_005315 {REF} {Length: 5133} {Pfam: Glycosyl hydrolases family 38 C-terminal domain [PF07748.15, score=94.0]; Glycosyl hydrolases family 38 C-terminal beta sandwich domain [PF17677.3, score=25.7]} {Human: ENSG00000104774, MAN2B1, mannosidase alpha class 2B member 1, [Score=284, Expect=2e-84]} {Mouse: ENSMUSG00000005142, Man2b1, mannosidase 2, alpha B1, [Score=268, Expect=7e-79]} {Dmel: FBgn0027611, LManII, Lysosomal alpha-mannosidase II, [Score=262, Expect=1e-76]} {Celegans: WBGene00018877, aman-1, Alpha-mannosidase, [Score=164, Expect=4e-43]} {Smed: dd_Smed_v6_1942_0_1, dd_Smed_v6_1942_0_1, [Score=248, Expect=3e-72]} {RNA1509_3414} {RNA1310_2591.1} {RNA815_805.1}
17.	MligTC455_53734	59	1.23	Mlig455_055711	Neo: - Age: -		0.95	-	-	-	-	0.950	-	Mlig455_055711 {REF} {Length: 2272} {RNA1509_48475} {RNA1310_18466} {RNA815_22605}

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