M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_18504

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_18504 85 1.78 Mlig455_015015, Mlig455_038638

Neo: -

Age: -

Mlig455_015015 {REF} {Length: 1382} {NoTransDecoderORF} {RNA1509_10728} {RNA1310_102527} {RNA815_20199}

Mlig455_038638 {REF} {Length: 3970} {RNA1509_10728} {RNA1310_102527} {RNA815_58474}

Cumulative graph for MligTC455_18504

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.459 1.807 0.99952 1.00000
RegionR2 0.453 1.807 0.60718 0.95592
RegionR3 0.796 1.807 0.44413 0.95838
RegionR4 3.327 1.807 0.01259 0.07241
RegionR5 -1.499 1.807 0.98284 1.00000
RegionR6 2.297 1.807 0.03147 0.32918
RegionR7 1.793 1.807 0.18164 0.78013
RegionR8 -3.708 1.807 0.99980 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.048 1.807 0.99956 1.00000
RegenerationR2 -0.271 1.807 0.69575 0.95507
RegenerationR3 -0.633 1.807 0.48630 0.85333
RegenerationR4 -0.642 1.807 0.49370 0.86643
RegenerationR5 1.434 1.807 0.19698 0.62921
RegenerationR6 -2.958 1.807 0.00256 0.05749
RegenerationBL -0.896 1.807 0.92167 1.00000
RegenerationTP 2.145 1.807 0.30994 0.75477


Genes with expression patterns similar to MligTC455_18504

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_18504 85 1.78 Mlig455_015015, Mlig455_038638

Neo: -

Age: -

 5 1.000 - 1.000 1.000 1.000 1.000

Mlig455_015015 {REF} {Length: 1382} {NoTransDecoderORF} {RNA1509_10728} {RNA1310_102527} {RNA815_20199}

Mlig455_038638 {REF} {Length: 3970} {RNA1509_10728} {RNA1310_102527} {RNA815_58474}
2. MligTC455_42211 363 7.57 Mlig455_064966

Neo: -

Age: logFC(26M/2M)=-0.524

 1.769 - - - 0.955 - 0.814 Mlig455_064966 {REF} {Length: 784} {Pfam: Protein of unknown function (DUF3421) [PF11901.10, score=121.9]} {Dmel: FBgn0034583, CG10527, [Score=92.0, Expect=7e-23]} {Smed: dd_Smed_v6_766_0_1, dd_Smed_v6_766_0_1, [Score=127, Expect=6e-38]} {RNA1509_43893, RNA1509_58041} {RNA1310_49421, RNA1509_43893, RNA1509_58041} {RNA1509_43893, RNA1509_58041, RNA815_24671}
3. MligTC455_13729 55 1.15 Mlig455_025374, Mlig455_025422

Neo: -

Age: Up-Down-Up

 1.756 0.950 - - 0.806 - -

Mlig455_025374 {REF} {Length: 2416} {Pfam: Innexin [PF00876.20, score=384.4]} {Dmel: FBgn0027108, Inx2, Innexin 2, [Score=107, Expect=2e-25]} {Celegans: WBGene00002123, inx-1, Innexin, [Score=358, Expect=8e-122]} {Smed: dd_Smed_v6_11077_0_2, dd_Smed_v6_11077_0_2, [Score=351, Expect=1e-117]} {RNA1310_71151} {RNA815_44601}

Mlig455_025422 {REF} {Length: 2321} {Pfam: Innexin [PF00876.20, score=381.6]} {Dmel: FBgn0027108, Inx2, Innexin 2, [Score=105, Expect=4e-25]} {Celegans: WBGene00002123, inx-1, Innexin, [Score=355, Expect=1e-120]} {Smed: dd_Smed_v6_11077_0_1, dd_Smed_v6_11077_0_1, [Score=358, Expect=9e-121]} {RNA1310_71151} {RNA815_44601}
4. MligTC455_16598 35 0.73 Mlig455_020223

Neo: -

Age: Up-Down-Up

 SLC32A1 1.676 0.966 - - - 0.710 - Mlig455_020223 {REF} {Length: 3130} {Pfam: Transmembrane amino acid transporter protein [PF01490.20, score=268.0]} {Human: ENSG00000101438, SLC32A1, solute carrier family 32 member 1, [RH, Score=370, Expect=1e-121]} {Mouse: ENSMUSG00000037771, Slc32a1, solute carrier family 32 (GABA vesicular transporter), member 1, [RH, Score=376, Expect=4e-124]} {Dmel: FBgn0033911, VGAT, Vesicular GABA Transporter, [RH, Score=407, Expect=6e-136]} {Celegans: WBGene00006783, unc-47, Vesicular GABA transporter, [RH, Score=374, Expect=2e-124]} {Smed: dd_Smed_v6_13324_0_1, dd_Smed_v6_13324_0_1, [Score=176, Expect=3e-49]} {RNA1509_41798} {RNA1310_63541} {RNA815_44591}
5. MligTC455_34853 23 0.47 Mlig455_045034

Neo: -

Age: -

 0.991 0.991 - - - - - Mlig455_045034 {REF} {Length: 2444} {RNA1310_85929} {RNA815_43650}
6. MligTC455_43621 222 4.63 Mlig455_025703

Neo: -

Age: -

Region-enriched R4: 4.147/0.00000

 0.965 - - - 0.965 - - Mlig455_025703 {REF} {Length: 2480} {RNA1509_50338} {RNA1310_25031} {RNA815_24211}
7. MligTC455_22737 119 2.47 Mlig455_057775

Neo: -

Age: Down-Up-Down

Region-enriched R6: 5.005/0.00000
Region-enriched R7: 4.876/0.00000

Regeneration-downregulated R6: -7.253

Regeneration-depleted R6: -7.253

 MMEL1 0.964 0.964 - - - - - Mlig455_057775 {REF} {Length: 3495} {Pfam: Peptidase family M13 [PF01431.23, score=134.6]; Peptidase family M13 [PF05649.15, score=84.7]} {Human: ENSG00000277131, MMEL1, membrane metalloendopeptidase like 1, [Score=164, Expect=1e-41]; ENSG00000142606, MMEL1, membrane metalloendopeptidase like 1, [Score=164, Expect=1e-41]} {Mouse: ENSMUSG00000115293, Gm49333, predicted gene, 49333, [Score=154, Expect=3e-38]; ENSMUSG00000022842, Ece2, endothelin converting enzyme 2, [Score=152, Expect=4e-38]; ENSMUSG00000027820, Mme, membrane metallo endopeptidase, [Score=150, Expect=3e-37]} {Dmel: FBgn0031081, Nep3, Neprilysin 3, [Score=138, Expect=2e-33]} {Celegans: WBGene00020230, nep-2, Neprilysin-2, [Score=156, Expect=2e-39]} {Smed: dd_Smed_v6_8276_0_1, dd_Smed_v6_8276_0_1, [Score=148, Expect=6e-37]} {RNA1509_47798} {RNA1310_6773} {RNA815_4414}
8. MligTC455_22736 174 3.62 Mlig455_036576

Neo: -

Age: -

Region-enriched R6: 5.263/0.00000
Region-enriched R7: 4.741/0.00000

Regeneration-depleted R6: -8.651
Regeneration-depleted BL: -7.996

 PHEX 0.958 0.958 - - - - - Mlig455_036576 {REF} {Length: 3336} {Pfam: Peptidase family M13 [PF01431.23, score=134.4]; Peptidase family M13 [PF05649.15, score=87.9]} {Human: ENSG00000102174, PHEX, phosphate regulating endopeptidase homolog X-linked, [Score=155, Expect=1e-38]; ENSG00000284917, EEF1AKMT4-ECE2, EEF1AKMT4-ECE2 readthrough, [Score=154, Expect=3e-38]; ENSG00000145194, ECE2, endothelin converting enzyme 2, [Score=154, Expect=2e-38]; ENSG00000196549, MME, membrane metalloendopeptidase, [Score=148, Expect=2e-36]} {Mouse: ENSMUSG00000022842, Ece2, endothelin converting enzyme 2, [Score=152, Expect=6e-38]; ENSMUSG00000115293, Gm49333, predicted gene, 49333, [Score=152, Expect=8e-38]; ENSMUSG00000027820, Mme, membrane metallo endopeptidase, [Score=148, Expect=1e-36]; ENSMUSG00000057457, Phex, phosphate regulating endopeptidase homolog, X-linked, [Score=146, Expect=6e-36]} {Dmel: FBgn0031081, Nep3, Neprilysin 3, [Score=135, Expect=2e-32]} {Celegans: WBGene00013926, nep-1, Neprilysin-1, [Score=155, Expect=4e-39]} {Smed: dd_Smed_v6_8276_0_1, dd_Smed_v6_8276_0_1, [Score=149, Expect=3e-37]} {RNA1509_47798} {RNA1310_6773, RNA1509_47798} {RNA1509_47798, RNA815_4414}
9. MligTC455_28069 186 3.87 Mlig455_005133

Neo: -

Age: -

 0.957 - - 0.957 - - - Mlig455_005133 {REF} {Length: 967} {NoTransDecoderORF} {RNA1509_38430} {RNA1310_48089} {RNA815_51074}
10. MligTC455_16531 56 1.17 Mlig455_048158

Neo: -

Age: -

 DRD2 0.955 - - - - 0.955 - Mlig455_048158 {REF} {Length: 2208} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=69.1]} {Human: ENSG00000149295, DRD2, dopamine receptor D2, [Score=51.2, Expect=3e-06]} {Dmel: FBgn0039747, AdoR, Adenosine receptor, [Score=49.3, Expect=8e-06]} {Celegans: WBGene00008278, npr-10, NeuroPeptide Receptor family, [Score=47.8, Expect=1e-05]} {Smed: dd_Smed_v6_18837_0_1, dd_Smed_v6_18837_0_1, [RH, Score=112, Expect=8e-27]} {RNA1509_14230} {RNA1310_111392} {RNA815_48719}
11. MligTC455_20125 45 0.94 Mlig455_016449

Neo: -

Age: Down-Up-Down

 SLC2A1 0.954 - - 0.954 - - - Mlig455_016449 {REF} {Length: 4101} {TRANSSPLICED} {Pfam: Sugar (and other) transporter [PF00083.26, score=238.1]; Major Facilitator Superfamily [PF07690.18, score=64.9]} {Human: ENSG00000117394, SLC2A1, solute carrier family 2 member 1, [Score=241, Expect=1e-74]} {Mouse: ENSMUSG00000028645, Slc2a1, solute carrier family 2 (facilitated glucose transporter), member 1, [Score=236, Expect=7e-73]} {Dmel: FBgn0264574, Glut1, Glucose transporter 1, [Score=213, Expect=2e-64]} {Celegans: WBGene00019207, fgt-1, Facilitated glucose transporter protein 1, [Score=207, Expect=6e-62]} {Smed: dd_Smed_v6_4396_0_1, dd_Smed_v6_4396_0_1, [Score=205, Expect=2e-61]} {RNA1509_29953, RNA1509_49862} {RNA1310_18869, RNA1509_49862} {RNA1509_49862, RNA815_4904.1}
12. MligTC455_22049 396 8.25 Mlig455_057361, Mlig455_059568

Neo: -

Age: logFC(26M/2M)=0.455

 KY 0.954 - - 0.954 - - -

Mlig455_057361 {REF} {Length: 2541} {Human: ENSG00000174611, KY, kyphoscoliosis peptidase, [Score=87.8, Expect=2e-17]} {Mouse: ENSMUSG00000035606, Ky, kyphoscoliosis peptidase, [Score=86.3, Expect=3e-17]} {Dmel: FBgn0050147, Hil, Hillarin, [Score=93.2, Expect=2e-19]} {Smed: dd_Smed_v6_5330_0_1, dd_Smed_v6_5330_0_1, [Score=99.4, Expect=2e-21]} {RNA1509_17146} {RNA1310_7357.1} {RNA815_2394.1}

Mlig455_059568 {REF} {Length: 2657} {TRANSSPLICED} {Human: ENSG00000174611, KY, kyphoscoliosis peptidase, [Score=85.9, Expect=9e-17]} {Mouse: ENSMUSG00000035606, Ky, kyphoscoliosis peptidase, [Score=87.4, Expect=2e-17]} {Dmel: FBgn0050147, Hil, Hillarin, [Score=90.9, Expect=1e-18]} {Smed: dd_Smed_v6_5330_0_1, dd_Smed_v6_5330_0_1, [Score=99.8, Expect=2e-21]} {RNA1509_17146} {RNA1310_7357.1} {RNA815_2394.1}
13. MligTC455_31476 251 5.24 Mlig455_027099

Neo: -

Age: -

 0.953 - - - 0.953 - - Mlig455_027099 {REF} {Length: 3261} {RNA1509_36736} {RNA1310_11727} {RNA815_8042}
14. MligTC455_30052 18 0.38 Mlig455_034711

Neo: -

Age: Up-Down-Down

Region-enriched R2: 7.452/0.01054

 0.95 - - - - 0.950 - Mlig455_034711 {REF} {Length: 3673} {Smed: dd_Smed_v6_7411_0_1, dd_Smed_v6_7411_0_1, [RH, Score=48.9, Expect=2e-06]} {RNA1509_14295} {RNA1310_1396.1} {RNA815_549.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA