M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_18913

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_18913 17071 355.64 Mlig455_037252

Neo: Int S/G2/M

Age: -

 BTF3 Mlig455_037252 {REF} {Length: 740} {TRANSSPLICED} {Pfam: NAC domain [PF01849.20, score=78.9]} {Human: ENSG00000145741, BTF3, basic transcription factor 3, [RH, Score=164, Expect=6e-52]; ENSG00000134717, BTF3L4, basic transcription factor 3 like 4, [RH, Score=158, Expect=2e-49]} {Mouse: ENSMUSG00000021660, Btf3, basic transcription factor 3, [RH, Score=164, Expect=4e-52]; ENSMUSG00000114133, Gm20075, predicted gene, 20075, [RH, Score=158, Expect=1e-49]; ENSMUSG00000028568, Btf3l4, basic transcription factor 3-like 4, [RH, Score=158, Expect=1e-49]} {Dmel: FBgn0031264, CG11835, [RH, Score=159, Expect=1e-45]} {Celegans: WBGene00002045, icd-1, Transcription factor BTF3 homolog, [RH, Score=174, Expect=2e-56]} {Smed: dd_Smed_v6_358_0_1, dd_Smed_v6_358_0_1, [RH, Score=181, Expect=7e-59]} {RNA1509_353} {RNA1310_48527, RNA1509_353} {RNA1509_353, RNA815_24381}

Cumulative graph for MligTC455_18913

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.039 8.571 0.03587 0.46935
RegionR2 -0.021 8.571 0.95787 1.00000
RegionR3 0.32 8.571 0.34597 0.88090
RegionR4 0.161 8.571 0.66567 0.96383
RegionR5 0.395 8.571 0.21971 0.52123
RegionR6 0.281 8.571 0.39692 0.96973
RegionR7 0.254 8.571 0.43879 1.00000
RegionR8 -0.352 8.571 0.32864 0.96191

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.911 8.571 0.13800 0.87412
RegenerationR2 -0.472 8.571 0.28101 0.72480
RegenerationR3 -0.39 8.571 0.37742 0.78912
RegenerationR4 -0.313 8.571 0.49105 0.86521
RegenerationR5 -0.871 8.571 0.04889 0.35774
RegenerationR6 -0.38 8.571 0.39109 0.73063
RegenerationBL -0.154 8.571 0.68595 1.00000
RegenerationTP 0.27 8.571 0.50390 0.90265


Genes with expression patterns similar to MligTC455_18913

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_18913 17071 355.64 Mlig455_037252

Neo: Int S/G2/M

Age: -

 BTF3 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_037252 {REF} {Length: 740} {TRANSSPLICED} {Pfam: NAC domain [PF01849.20, score=78.9]} {Human: ENSG00000145741, BTF3, basic transcription factor 3, [RH, Score=164, Expect=6e-52]; ENSG00000134717, BTF3L4, basic transcription factor 3 like 4, [RH, Score=158, Expect=2e-49]} {Mouse: ENSMUSG00000021660, Btf3, basic transcription factor 3, [RH, Score=164, Expect=4e-52]; ENSMUSG00000114133, Gm20075, predicted gene, 20075, [RH, Score=158, Expect=1e-49]; ENSMUSG00000028568, Btf3l4, basic transcription factor 3-like 4, [RH, Score=158, Expect=1e-49]} {Dmel: FBgn0031264, CG11835, [RH, Score=159, Expect=1e-45]} {Celegans: WBGene00002045, icd-1, Transcription factor BTF3 homolog, [RH, Score=174, Expect=2e-56]} {Smed: dd_Smed_v6_358_0_1, dd_Smed_v6_358_0_1, [RH, Score=181, Expect=7e-59]} {RNA1509_353} {RNA1310_48527, RNA1509_353} {RNA1509_353, RNA815_24381}
2. MligTC455_47978 338 7.05 Mlig455_029027

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.509

 0.985 - - - - 0.985 - Mlig455_029027 {REF} {Length: 2509} {RNA1509_33577, RNA1509_55410} {RNA1310_26945, RNA1509_33577, RNA1509_55410} {RNA1509_33577, RNA1509_55410, RNA815_10135.1}
3. MligTC455_45726 5045 105.11 Mlig455_056717, Mlig455_060302

Neo: -

Age: -

Region-enriched R4: 1.349/0.00349

 NXNL2 0.982 - - - - 0.982 -

Mlig455_056717 {REF} {Length: 1138} {Pfam: Thioredoxin-like [PF13905.8, score=95.2]; AhpC/TSA family [PF00578.23, score=48.2]; Redoxin [PF08534.12, score=44.5]; Thioredoxin [PF00085.22, score=39.8]; Thioredoxin-like domain [PF13098.8, score=29.9]; Thioredoxin-like [PF13899.8, score=22.0]; Thioredoxin [PF14595.8, score=20.3]} {Human: ENSG00000130045, NXNL2, nucleoredoxin like 2, [RH, Score=85.9, Expect=2e-21]} {Mouse: ENSMUSG00000021396, Nxnl2, nucleoredoxin-like 2, [RH, Score=87.0, Expect=3e-22]} {Celegans: WBGene00021796, Y52E8A.3, [RH, Score=120, Expect=1e-35]} {RNA1509_4074, RNA1509_46636, RNA1509_9736} {RNA1310_41004, RNA1509_4074, RNA1509_46636, RNA1509_9736} {RNA1509_4074, RNA1509_46636, RNA1509_9736, RNA815_22016}

Mlig455_060302 {REF} {Length: 1261} {Pfam: Thioredoxin-like [PF13905.8, score=95.5]; AhpC/TSA family [PF00578.23, score=48.5]; Redoxin [PF08534.12, score=44.5]; Thioredoxin [PF00085.22, score=39.7]; Thioredoxin-like domain [PF13098.8, score=30.0]; Thioredoxin-like [PF13899.8, score=22.0]; Thioredoxin [PF14595.8, score=20.2]} {Human: ENSG00000130045, NXNL2, nucleoredoxin like 2, [RH, Score=85.9, Expect=1e-21]} {Mouse: ENSMUSG00000021396, Nxnl2, nucleoredoxin-like 2, [RH, Score=88.2, Expect=1e-22]} {Celegans: WBGene00021796, Y52E8A.3, [RH, Score=123, Expect=1e-36]} {RNA1509_21827, RNA1509_22137, RNA1509_9736} {RNA1310_41004, RNA1509_21827, RNA1509_22137} {RNA1509_21827, RNA1509_22137, RNA815_22016}
4. MligTC455_30265 720 14.99 Mlig455_014549, Mlig455_036942

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.640

 0.961 - - - - 0.961 -

Mlig455_014549 {REF} {Length: 1343} {RNA1509_45000} {RNA1310_32524} {RNA815_26384}

Mlig455_036942 {REF} {Length: 1343} {RNA1509_45000} {RNA1310_32524} {RNA815_26384}
5. MligTC455_31448 183 3.82 Mlig455_033834

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_033834 {REF} {Length: 2859} {RNA1509_53217} {RNA1310_59954.1} {RNA815_36681.1}
6. MligTC455_39622 339 7.06 Mlig455_006332

Neo: -

Age: -

 FAM91A1 0.958 - - - - 0.958 - Mlig455_006332 {REF} {Length: 4161} {TRANSSPLICED} {Pfam: FAM91 C-terminus [PF14648.8, score=404.1]; FAM91 N-terminus [PF14647.8, score=395.5]} {Human: ENSG00000176853, FAM91A1, family with sequence similarity 91 member A1, [RH, Score=667, Expect=0.0]} {Mouse: ENSMUSG00000037119, Fam91a1, family with sequence similarity 91, member A1, [RH, Score=674, Expect=0.0]; ENSMUSG00000116351, Fam91a1, family with sequence similarity 91, member A1, [RH, Score=674, Expect=0.0]} {Dmel: FBgn0064766, CG7600, [RH, Score=432, Expect=7e-138]} {Celegans: WBGene00009366, F33H2.2, [RH, Score=479, Expect=1e-157]} {Smed: dd_Smed_v6_2471_0_1, dd_Smed_v6_2471_0_1, [RH, Score=310, Expect=2e-92]} {RNA1509_26276} {RNA1310_3146} {RNA815_1984}
7. MligTC455_13686 81 1.69 Mlig455_025201

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_025201 {REF} {Length: 513} {NoTransDecoderORF} {RNA1509_57863} {RNA1310_12861} {RNA815_64064}
8. MligTC455_15136 208 4.33 Mlig455_000802

Neo: -

Age: Up-Down-Down

 RALGPS2 0.955 - - - - 0.955 - Mlig455_000802 {REF} {Length: 4105} {TRANSSPLICED} {Pfam: RasGEF domain [PF00617.21, score=144.2]} {Human: ENSG00000116191, RALGPS2, Ral GEF with PH domain and SH3 binding motif 2, [Score=250, Expect=4e-73]; ENSG00000136828, RALGPS1, Ral GEF with PH domain and SH3 binding motif 1, [Score=249, Expect=7e-75]} {Mouse: ENSMUSG00000026594, Ralgps2, Ral GEF with PH domain and SH3 binding motif 2, [Score=249, Expect=4e-74]; ENSMUSG00000038831, Ralgps1, Ral GEF with PH domain and SH3 binding motif 1, [Score=245, Expect=1e-71]} {Dmel: FBgn0034158, CG5522, [Score=236, Expect=4e-67]} {Celegans: WBGene00017891, rgl-1, Ral GDS-Like, [Score=72.8, Expect=6e-13]} {Smed: dd_Smed_v6_9244_0_1, dd_Smed_v6_9244_0_1, [RH, Score=208, Expect=4e-56]} {RNA1509_15882} {RNA1310_10455, RNA1509_15882} {RNA1509_15882, RNA815_18407}
9. MligTC455_26809 151 3.15 Mlig455_002598

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_002598 {REF} {Length: 1159} {NoTransDecoderORF} {RNA1509_30416} {RNA1310_68887} {RNA815_1628}
10. MligTC455_33752 75 1.57 Mlig455_009289

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_009289 {REF} {Length: 2683} {RNA1509_34999} {RNA1310_11034.2} {RNA815_18722.1}
11. MligTC455_54124 453 9.43 Mlig455_057229

Neo: -

Age: -

Region-enriched R6: 2.179/0.02167

 LAMA2 0.952 - - - - 0.952 - Mlig455_057229 {REF} {Length: 1958} {Pfam: Tropomyosin [PF00261.22, score=76.4]; Tropomyosin like [PF12718.9, score=27.4]; Crescentin protein [PF19220.2, score=20.8]} {Human: ENSG00000196569, LAMA2, laminin subunit alpha 2, [Score=48.9, Expect=5e-06]} {Celegans: WBGene00002978, lev-11, Tropomyosin isoforms a/b/d/f, [Score=50.8, Expect=2e-07]} {Smed: dd_Smed_v6_1790_0_1, dd_Smed_v6_1790_0_1, [Score=55.5, Expect=4e-09]} {RNA1509_20736} {RNA1310_27668, RNA1509_20736} {RNA1509_20736, RNA815_13494}
12. MligTC455_30775 190 3.95 Mlig455_050445

Neo: Int S/G2/M

Age: -

 0.95 - - - - 0.950 - Mlig455_050445 {REF} {Length: 1566} {RNA1509_49830} {RNA1310_44065.1} {RNA815_31243}
13. MligTC455_42712 1880 39.17 Mlig455_005106, Mlig455_005197

Neo: -

Age: Down-Up-Up

 PIGM 0.95 - - - - 0.950 -

Mlig455_005106 {REF} {Length: 1971} {TRANSSPLICED} {Pfam: Mannosyltransferase (PIG-M) [PF05007.15, score=176.2]; GPI transamidase subunit PIG-U [PF06728.15, score=26.9]} {Human: ENSG00000143315, PIGM, phosphatidylinositol glycan anchor biosynthesis class M, [RH, Score=181, Expect=9e-51]} {Mouse: ENSMUSG00000050229, Pigm, phosphatidylinositol glycan anchor biosynthesis, class M, [RH, Score=177, Expect=2e-49]} {Dmel: FBgn0034649, PIG-M, Phosphatidylinositol glycan anchor biosynthesis class M, [RH, Score=141, Expect=3e-36]} {Celegans: WBGene00007189, B0491.1, [RH, Score=196, Expect=8e-57]} {Smed: dd_Smed_v6_13168_0_1, dd_Smed_v6_13168_0_1, [RH, Score=214, Expect=5e-64]} {RNA1509_37518, RNA1509_40700} {RNA1310_25088, RNA1509_37518} {RNA1509_37518, RNA815_10384}

Mlig455_005197 {REF} {Length: 795} {TRANSSPLICED} {RNA1509_35162, RNA1509_37628} {RNA1310_47467, RNA1509_35162, RNA1509_37628} {RNA1509_35162, RNA1509_37628, RNA815_26331}
14. MligTC455_52162 893 18.6 Mlig455_000693, Mlig455_000751

Neo: -

Age: Down-Up-Down

 FAM177A1 0.95 - - - - 0.950 -

Mlig455_000693 {REF} {Length: 1193} {TRANSSPLICED} {Pfam: FAM177 family [PF14774.8, score=96.9]} {Human: ENSG00000151327, FAM177A1, family with sequence similarity 177 member A1, [RH, Score=82.8, Expect=2e-19]} {Mouse: ENSMUSG00000094103, 1700047I17Rik2, RIKEN cDNA 1700047I17 gene 2, [RH, Score=82.8, Expect=1e-19]; ENSMUSG00000095595, Fam177a, family with sequence similarity 177, member A, [RH, Score=82.8, Expect=1e-19]} {Dmel: FBgn0029937, CG8300, [RH, Score=58.9, Expect=5e-11]} {Smed: dd_Smed_v6_3285_0_1, dd_Smed_v6_3285_0_1, [RH, Score=53.5, Expect=5e-10]} {RNA1509_25216, RNA1509_31337} {RNA1310_23587.2, RNA1509_31337} {RNA1509_31337, RNA815_25202}

Mlig455_000751 {REF} {Length: 1192} {TRANSSPLICED} {Pfam: FAM177 family [PF14774.8, score=97.6]} {Human: ENSG00000151327, FAM177A1, family with sequence similarity 177 member A1, [RH, Score=82.8, Expect=2e-19]} {Mouse: ENSMUSG00000094103, 1700047I17Rik2, RIKEN cDNA 1700047I17 gene 2, [RH, Score=82.4, Expect=1e-19]; ENSMUSG00000095595, Fam177a, family with sequence similarity 177, member A, [RH, Score=82.4, Expect=1e-19]} {Dmel: FBgn0029937, CG8300, [RH, Score=58.9, Expect=5e-11]} {Smed: dd_Smed_v6_3285_0_1, dd_Smed_v6_3285_0_1, [RH, Score=53.5, Expect=5e-10]} {RNA1509_25216, RNA1509_40945, RNA1509_41307} {RNA1310_23587.2, RNA1509_25216, RNA1509_40945, RNA1509_41307} {RNA1509_25216, RNA1509_40945, RNA1509_41307, RNA815_25202}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA