M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_54124

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_54124 453 9.43 Mlig455_057229

Neo: -

Age: -

Region-enriched R6: 2.179/0.02167

 LAMA2 Mlig455_057229 {REF} {Length: 1958} {Pfam: Tropomyosin [PF00261.22, score=76.4]; Tropomyosin like [PF12718.9, score=27.4]; Crescentin protein [PF19220.2, score=20.8]} {Human: ENSG00000196569, LAMA2, laminin subunit alpha 2, [Score=48.9, Expect=5e-06]} {Celegans: WBGene00002978, lev-11, Tropomyosin isoforms a/b/d/f, [Score=50.8, Expect=2e-07]} {Smed: dd_Smed_v6_1790_0_1, dd_Smed_v6_1790_0_1, [Score=55.5, Expect=4e-09]} {RNA1509_20736} {RNA1310_27668, RNA1509_20736} {RNA1509_20736, RNA815_13494}

Cumulative graph for MligTC455_54124

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.444 3.552 0.06977 0.59267
RegionR2 1.405 3.552 0.08977 0.36739
RegionR3 1.263 3.552 0.04272 0.36101
RegionR4 -1.135 3.552 0.16585 0.42697
RegionR5 -0.486 3.552 0.47746 0.84078
RegionR6 2.179 3.552 0.00042 0.02167
RegionR7 -0.162 3.552 0.85622 1.00000
RegionR8 0.38 3.552 0.66712 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 2.821 3.552 0.37663 1.00000
RegenerationR2 0.354 3.552 0.61064 0.91974
RegenerationR3 0.434 3.552 0.56864 0.89343
RegenerationR4 0.926 3.552 0.25666 0.70468
RegenerationR5 1.649 3.552 0.02900 0.28700
RegenerationR6 0.062 3.552 0.92065 1.00000
RegenerationBL -0.01 3.552 0.99769 1.00000
RegenerationTP 1.982 3.552 0.01683 0.22267


Genes with expression patterns similar to MligTC455_54124

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_54124 453 9.43 Mlig455_057229

Neo: -

Age: -

Region-enriched R6: 2.179/0.02167

 LAMA2 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_057229 {REF} {Length: 1958} {Pfam: Tropomyosin [PF00261.22, score=76.4]; Tropomyosin like [PF12718.9, score=27.4]; Crescentin protein [PF19220.2, score=20.8]} {Human: ENSG00000196569, LAMA2, laminin subunit alpha 2, [Score=48.9, Expect=5e-06]} {Celegans: WBGene00002978, lev-11, Tropomyosin isoforms a/b/d/f, [Score=50.8, Expect=2e-07]} {Smed: dd_Smed_v6_1790_0_1, dd_Smed_v6_1790_0_1, [Score=55.5, Expect=4e-09]} {RNA1509_20736} {RNA1310_27668, RNA1509_20736} {RNA1509_20736, RNA815_13494}
2. MligTC455_54123 611 12.72 Mlig455_052009

Neo: -

Age: logFC(26M/2M)=-0.288

Region-enriched R6: 2.051/0.00658

 5.294 0.987 0.966 0.756 0.771 0.924 0.890 Mlig455_052009 {REF} {Length: 1837} {Pfam: Tropomyosin [PF00261.22, score=75.9]; Tropomyosin like [PF12718.9, score=26.9]; Crescentin protein [PF19220.2, score=20.2]} {Celegans: WBGene00002978, lev-11, Tropomyosin isoforms a/b/d/f, [Score=50.8, Expect=2e-07]} {Smed: dd_Smed_v6_1790_0_1, dd_Smed_v6_1790_0_1, [Score=54.3, Expect=8e-09]} {RNA1509_20736, RNA1509_29863} {RNA1310_27668, RNA1509_29863} {RNA1509_29863, RNA815_13494}
3. MligTC455_40390 232 4.84 Mlig455_011974

Neo: -

Age: -

Region-enriched R5: 1.669/0.00483

 0.971 - - - 0.971 - - Mlig455_011974 {REF} {Length: 493} {TRANSSPLICED} {Pfam: PET assembly of cytochrome c oxidase, mitochondrial [PF15786.7, score=45.7]} {RNA1509_37276} {RNA1310_21851} {RNA815_12138.2}
4. MligTC455_39877 321 6.69 Mlig455_068056

Neo: -

Age: Down-Up-Down

Region-enriched R5: 1.975/0.00587

 NOC3L 0.966 - - - 0.966 - - Mlig455_068056 {REF} {Length: 3343} {TRANSSPLICED} {Pfam: Nucleolar complex-associated protein [PF07540.13, score=67.4]} {Human: ENSG00000173145, NOC3L, NOC3 like DNA replication regulator, [Score=180, Expect=9e-48]} {Mouse: ENSMUSG00000024999, Noc3l, NOC3 like DNA replication regulator, [Score=175, Expect=4e-46]} {Dmel: FBgn0037489, CG1234, [Score=141, Expect=7e-35]} {Celegans: WBGene00016508, C37H5.5, Nucleolar complex protein 3 homolog, [Score=118, Expect=1e-27]} {Smed: dd_Smed_v6_13062_0_1, dd_Smed_v6_13062_0_1, [Score=91.7, Expect=2e-19]} {RNA1509_7132} {RNA1310_9494} {RNA815_11181}
5. MligTC455_44771 19715 410.73 Mlig455_036516

Neo: -

Age: Down-Down-Up

 RPLP1 0.965 - - - 0.965 - - Mlig455_036516 {REF} {Length: 524} {TRANSSPLICED} {Pfam: 60s Acidic ribosomal protein [PF00428.21, score=89.2]} {Human: ENSG00000137818, RPLP1, ribosomal protein lateral stalk subunit P1, [RH, Score=84.0, Expect=1e-21]} {Mouse: ENSMUSG00000007892, Rplp1, ribosomal protein, large, P1, [RH, Score=83.6, Expect=9e-22]; ENSMUSG00000060019, Gm10073, predicted pseudogene 10073, [RH, Score=80.9, Expect=1e-20]} {Dmel: FBgn0002593, RpLP1, Ribosomal protein LP1, [Score=100, Expect=2e-28]} {Celegans: WBGene00004409, rla-1, 60S acidic ribosomal protein P1, [RH, Score=89.0, Expect=3e-24]} {Smed: dd_Smed_v6_224_0_1, dd_Smed_v6_224_0_1, [RH, Score=68.2, Expect=4e-16]} {RNA1509_12973} {RNA1310_47850} {RNA815_36874.2}
6. MligTC455_51811 307 6.4 Mlig455_068198

Neo: -

Age: -

 RAB29 0.965 - - - 0.965 - - Mlig455_068198 {REF} {Length: 2524} {Pfam: Ras family [PF00071.24, score=158.5]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=107.9]; ADP-ribosylation factor family [PF00025.23, score=54.9]; 50S ribosome-binding GTPase [PF01926.25, score=19.5]; Gtr1/RagA G protein conserved region [PF04670.14, score=18.5]} {Human: ENSG00000117280, RAB29, RAB29, member RAS oncogene family, [RH, Score=226, Expect=1e-74]} {Mouse: ENSMUSG00000026433, Rab29, RAB29, member RAS oncogene family, [RH, Score=223, Expect=2e-73]} {Dmel: FBgn0002567, Rab32, [Score=207, Expect=2e-67]} {Celegans: WBGene00011083, glo-1, Gut granule LOss; Rab GTPase GLO-1, [Score=183, Expect=5e-58]} {Smed: dd_Smed_v6_2915_0_1, dd_Smed_v6_2915_0_1, [RH, Score=234, Expect=2e-78]} {RNA1509_54279} {RNA1310_15012, RNA1509_54279} {RNA1509_54279, RNA815_16250.2}
7. MligTC455_44772 38325 798.43 Mlig455_007033, Mlig455_069133

Neo: Int S/G2/M

Age: logFC(26M/2M)=0.688

 RPLP1 0.964 - - - 0.964 - -

Mlig455_007033 {REF} {Length: 519} {TRANSSPLICED} {Pfam: 60s Acidic ribosomal protein [PF00428.21, score=90.7]} {Human: ENSG00000137818, RPLP1, ribosomal protein lateral stalk subunit P1, [RH, Score=84.3, Expect=6e-22]} {Mouse: ENSMUSG00000007892, Rplp1, ribosomal protein, large, P1, [RH, Score=83.6, Expect=9e-22]; ENSMUSG00000060019, Gm10073, predicted pseudogene 10073, [RH, Score=80.9, Expect=1e-20]} {Dmel: FBgn0002593, RpLP1, Ribosomal protein LP1, [RH, Score=100, Expect=1e-28]} {Celegans: WBGene00004409, rla-1, 60S acidic ribosomal protein P1, [RH, Score=89.4, Expect=3e-24]} {Smed: dd_Smed_v6_224_0_1, dd_Smed_v6_224_0_1, [RH, Score=69.3, Expect=1e-16]} {RNA1509_12973, RNA1509_264} {RNA1310_47850, RNA1509_12973, RNA1509_264} {RNA1509_12973, RNA1509_264, RNA815_36874.2}

Mlig455_069133 {REF} {Length: 524} {TRANSSPLICED} {Pfam: 60s Acidic ribosomal protein [PF00428.21, score=90.7]} {Human: ENSG00000137818, RPLP1, ribosomal protein lateral stalk subunit P1, [RH, Score=84.3, Expect=6e-22]} {Mouse: ENSMUSG00000007892, Rplp1, ribosomal protein, large, P1, [RH, Score=83.6, Expect=9e-22]; ENSMUSG00000060019, Gm10073, predicted pseudogene 10073, [RH, Score=80.9, Expect=1e-20]} {Dmel: FBgn0002593, RpLP1, Ribosomal protein LP1, [RH, Score=100, Expect=1e-28]} {Celegans: WBGene00004409, rla-1, 60S acidic ribosomal protein P1, [RH, Score=89.4, Expect=3e-24]} {Smed: dd_Smed_v6_224_0_1, dd_Smed_v6_224_0_1, [RH, Score=69.3, Expect=1e-16]} {RNA1509_264, RNA1509_6644} {RNA1310_47850, RNA1509_6644} {RNA1509_6644, RNA815_36874.2}
8. MligTC455_26105 77 1.61 Mlig455_009361

Neo: -

Age: logFC(26M/2M)=-0.384

 0.961 - - - 0.961 - - Mlig455_009361 {REF} {Length: 3566} {RNA1509_41127} {RNA1310_28777.1} {RNA815_5881.1}
9. MligTC455_24546 1132 23.59 Mlig455_006789

Neo: Germline

Age: -

Region-specific R5: 4.115

Region-enriched R5: 3.020/0.00000

 0.96 - - - 0.960 - - Mlig455_006789 {REF} {Length: 5061} {Pfam: Antistasin family [PF02822.16, score=35.4]} {RNA1509_24809, RNA1509_29730, RNA1509_33068, RNA1509_4061, RNA1509_8397} {RNA1310_7513.1, RNA1509_24809, RNA1509_29730, RNA1509_33068, RNA1509_4061, RNA1509_8397} {RNA1509_24809, RNA1509_29730, RNA1509_33068, RNA1509_4061, RNA1509_8397, RNA815_3450.1}
10. MligTC455_48041 684 14.26 Mlig455_015166

Neo: -

Age: Down-Up-Down

 SQSTM1 0.957 - - - - 0.957 - Mlig455_015166 {REF} {Length: 2821} {Pfam: UBA domain [PF16577.7, score=30.1]; Zinc finger, ZZ type [PF00569.19, score=27.1]; PB1 domain [PF00564.26, score=25.6]} {Human: ENSG00000161011, SQSTM1, sequestosome 1, [RH, Score=103, Expect=1e-23]} {Mouse: ENSMUSG00000015837, Sqstm1, sequestosome 1, [RH, Score=108, Expect=2e-25]} {Dmel: FBgn0003231, ref(2)P, refractory to sigma P, [RH, Score=59.7, Expect=3e-09]} {Celegans: WBGene00011737, sqst-1, SeQueSTosome related, [Score=52.8, Expect=3e-07]} {RNA1509_49422, RNA1509_56663} {RNA1310_11564, RNA1509_56663} {RNA1509_56663, RNA815_6596}
11. MligTC455_47323 345 7.19 Mlig455_048949

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_048949 {REF} {Length: 797} {RNA1509_56237} {RNA1310_17381} {RNA815_10247}
12. MligTC455_39181 265 5.52 Mlig455_061266

Neo: Int S/G2/M

Age: -

Region-specific R4: 3.386

 NCAPH 0.953 - - - - 0.953 - Mlig455_061266 {REF} {Length: 4275} {Pfam: Condensin complex subunit 2 [PF05786.16, score=260.1]} {Human: ENSG00000121152, NCAPH, non-SMC condensin I complex subunit H, [Score=129, Expect=5e-30]} {Mouse: ENSMUSG00000034906, Ncaph, non-SMC condensin I complex, subunit H, [Score=129, Expect=2e-30]} {Dmel: FBgn0014127, barr, barren, [RH, Score=70.1, Expect=5e-12]} {Smed: dd_Smed_v6_8491_0_3, dd_Smed_v6_8491_0_3, [RH, Score=159, Expect=4e-40]} {RNA1509_7623} {RNA1310_2562.1} {RNA815_8919}
13. MligTC455_18913 17071 355.64 Mlig455_037252

Neo: Int S/G2/M

Age: -

 BTF3 0.952 - - - - 0.952 - Mlig455_037252 {REF} {Length: 740} {TRANSSPLICED} {Pfam: NAC domain [PF01849.20, score=78.9]} {Human: ENSG00000145741, BTF3, basic transcription factor 3, [RH, Score=164, Expect=6e-52]; ENSG00000134717, BTF3L4, basic transcription factor 3 like 4, [RH, Score=158, Expect=2e-49]} {Mouse: ENSMUSG00000021660, Btf3, basic transcription factor 3, [RH, Score=164, Expect=4e-52]; ENSMUSG00000114133, Gm20075, predicted gene, 20075, [RH, Score=158, Expect=1e-49]; ENSMUSG00000028568, Btf3l4, basic transcription factor 3-like 4, [RH, Score=158, Expect=1e-49]} {Dmel: FBgn0031264, CG11835, [RH, Score=159, Expect=1e-45]} {Celegans: WBGene00002045, icd-1, Transcription factor BTF3 homolog, [RH, Score=174, Expect=2e-56]} {Smed: dd_Smed_v6_358_0_1, dd_Smed_v6_358_0_1, [RH, Score=181, Expect=7e-59]} {RNA1509_353} {RNA1310_48527, RNA1509_353} {RNA1509_353, RNA815_24381}
14. MligTC455_43873 861 17.94 Mlig455_006939

Neo: Irradiation

Age: -

Region-enriched R5: 3.807/0.00000

 0.952 - - - 0.952 - - Mlig455_006939 {REF} {Length: 1363} {RNA1509_10916, RNA1509_4367, RNA1509_52262} {RNA1310_31891, RNA1509_10916, RNA1509_4367, RNA1509_52262} {RNA1509_10916, RNA1509_4367, RNA1509_52262, RNA815_15503}
15. MligTC455_44251 85 1.77 Mlig455_017749, Mlig455_025726

Neo: -

Age: Down-Up-Down

 0.952 - - - 0.952 - -

Mlig455_017749 {REF} {Length: 783} {TRANSSPLICED} {RNA1509_58793} {RNA1310_18791} {RNA815_10594.2}

Mlig455_025726 {REF} {Length: 269} {NoTransDecoderORF}
16. MligTC455_26047 280 5.83 Mlig455_061668

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_061668 {REF} {Length: 1740} {NoTransDecoderORF} {RNA1509_47332} {RNA1310_41891, RNA1509_47332} {RNA1509_47332, RNA815_20265.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA