Data search
Results for MligTC455_19286
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_19286 | 687 | 14.30 | Mlig455_067672 | Neo: - Age: - Region-enriched R4: 1.364/0.04890 |
STX12 | Mlig455_067672 {REF} {Length: 2719} {TRANSSPLICED} {Pfam: Syntaxin-like protein [PF14523.8, score=58.2]; SNARE domain [PF05739.21, score=51.4]; Syntaxin [PF00804.27, score=26.9]} {Human: ENSG00000117758, STX12, syntaxin 12, [RH, Score=129, Expect=2e-35]} {Mouse: ENSMUSG00000019998, Stx7, syntaxin 7, [RH, Score=130, Expect=3e-36]; ENSMUSG00000028879, Stx12, syntaxin 12, [RH, Score=126, Expect=1e-34]} {Dmel: FBgn0267849, Syx7, Syntaxin 7, [RH, Score=114, Expect=7e-30]} {Celegans: WBGene00009478, syx-7, SYntaXin, [RH, Score=104, Expect=9e-27]} {Smed: dd_Smed_v6_4152_0_1, dd_Smed_v6_4152_0_1, [RH, Score=91.3, Expect=6e-22]} {RNA1509_10756, RNA1509_33541, RNA1509_54323} {RNA1310_6233, RNA1509_10756, RNA1509_33541, RNA1509_54323} {RNA1509_10756, RNA1509_33541, RNA1509_54323, RNA815_11207} |
Cumulative graph for MligTC455_19286
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -0.937 | 4.184 | 0.41088 | 1.00000 | |
| RegionR2 | 0.326 | 4.184 | 0.54166 | 0.90951 | |
| RegionR3 | 0.258 | 4.184 | 0.55834 | 1.00000 | |
| RegionR4 | 1.364 | 4.184 | 0.00744 | 0.04890 | |
| RegionR5 | -0.222 | 4.184 | 0.60562 | 0.96300 | |
| RegionR6 | -0.29 | 4.184 | 0.53369 | 1.00000 | |
| RegionR7 | 0.076 | 4.184 | 0.88176 | 1.00000 | |
| RegionR8 | -0.575 | 4.184 | 0.38213 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -6.626 | 4.184 | 0.13432 | 0.86920 | |
| RegenerationR2 | -0.244 | 4.184 | 0.59786 | 0.91503 | |
| RegenerationR3 | -0.236 | 4.184 | 0.64434 | 0.92654 | |
| RegenerationR4 | -1.232 | 4.184 | 0.02543 | 0.25619 | |
| RegenerationR5 | 0.234 | 4.184 | 0.63843 | 0.92611 | |
| RegenerationR6 | 0.33 | 4.184 | 0.53549 | 0.83022 | |
| RegenerationBL | -0.239 | 4.184 | 0.68387 | 1.00000 | |
| RegenerationTP | -0.261 | 4.184 | 0.67851 | 1.00000 |
Genes with expression patterns similar to MligTC455_19286
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_19286 | 687 | 14.3 | Mlig455_067672 | Neo: - Age: - Region-enriched R4: 1.364/0.04890 |
STX12 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_067672 {REF} {Length: 2719} {TRANSSPLICED} {Pfam: Syntaxin-like protein [PF14523.8, score=58.2]; SNARE domain [PF05739.21, score=51.4]; Syntaxin [PF00804.27, score=26.9]} {Human: ENSG00000117758, STX12, syntaxin 12, [RH, Score=129, Expect=2e-35]} {Mouse: ENSMUSG00000019998, Stx7, syntaxin 7, [RH, Score=130, Expect=3e-36]; ENSMUSG00000028879, Stx12, syntaxin 12, [RH, Score=126, Expect=1e-34]} {Dmel: FBgn0267849, Syx7, Syntaxin 7, [RH, Score=114, Expect=7e-30]} {Celegans: WBGene00009478, syx-7, SYntaXin, [RH, Score=104, Expect=9e-27]} {Smed: dd_Smed_v6_4152_0_1, dd_Smed_v6_4152_0_1, [RH, Score=91.3, Expect=6e-22]} {RNA1509_10756, RNA1509_33541, RNA1509_54323} {RNA1310_6233, RNA1509_10756, RNA1509_33541, RNA1509_54323} {RNA1509_10756, RNA1509_33541, RNA1509_54323, RNA815_11207} |
| 2. | MligTC455_47788 | 1168 | 24.33 | Mlig455_004934 | Neo: - Age: - |
PPP1R16B | 1.883 | - | - | - | 0.926 | - | 0.957 | Mlig455_004934 {REF} {Length: 4092} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=103.4]; Ankyrin repeats (many copies) [PF13637.8, score=94.4]; Ankyrin repeats (many copies) [PF13857.8, score=81.6]; Ankyrin repeat [PF00023.32, score=70.6]; Ankyrin repeat [PF13606.8, score=70.1]} {Human: ENSG00000101445, PPP1R16B, protein phosphatase 1 regulatory subunit 16B, [RH, Score=328, Expect=9e-105]} {Mouse: ENSMUSG00000033819, Ppp1r16a, protein phosphatase 1, regulatory subunit 16A, [RH, Score=327, Expect=6e-105]; ENSMUSG00000037754, Ppp1r16b, protein phosphatase 1, regulatory subunit 16B, [RH, Score=325, Expect=6e-104]} {Dmel: FBgn0036801, MYPT-75D, [RH, Score=355, Expect=3e-113]} {Celegans: WBGene00001582, gfi-2, GEI-4 (Four) Interacting protein, [RH, Score=272, Expect=9e-85]} {Smed: dd_Smed_v6_5941_0_2, dd_Smed_v6_5941_0_2, [RH, Score=363, Expect=3e-119]} {RNA1509_36975, RNA1509_53605} {RNA1310_14014, RNA1509_36975, RNA1509_53605} {RNA1509_36975, RNA1509_53605, RNA815_10926.1} |
| 3. | MligTC455_50122 | 109 | 2.27 | Mlig455_010454 | Neo: - Age: - |
1.746 | - | - | - | - | 0.951 | 0.795 | Mlig455_010454 {REF} {Length: 253} {NoTransDecoderORF} {RNA1509_18739} {RNA1310_17486} {RNA815_6738} | |
| 4. | MligTC455_50241 | 681 | 14.2 | Mlig455_026783, Mlig455_051797 | Neo: - Age: - |
DCTN1 | 0.973 | - | - | - | - | - | 0.973 | Mlig455_026783 {REF} {Length: 5230} {TRANSSPLICED} {Pfam: Dynein associated protein [PF12455.10, score=170.4]; CAP-Gly domain [PF01302.27, score=89.6]} {Human: ENSG00000204843, DCTN1, dynactin subunit 1, [RH, Score=644, Expect=0.0]} {Mouse: ENSMUSG00000031865, Dctn1, dynactin 1, [RH, Score=613, Expect=0.0]} {Dmel: FBgn0001108, DCTN1-p150, Dynactin 1, p150 subunit, [RH, Score=502, Expect=2e-155]} {Celegans: WBGene00001017, dnc-1, DyNactin Complex component, [RH, Score=288, Expect=1e-79]} {Smed: dd_Smed_v6_4065_0_1, dd_Smed_v6_4065_0_1, [RH, Score=487, Expect=5e-151]} {RNA1509_3552} {RNA1310_1904, RNA1509_3552} {RNA1509_3552, RNA815_2756} Mlig455_051797 {REF} {Length: 5181} {TRANSSPLICED} {tRNA: Met(CAT),pseudo, score=24.3} {Pfam: Dynein associated protein [PF12455.10, score=170.7]; CAP-Gly domain [PF01302.27, score=89.6]} {Human: ENSG00000204843, DCTN1, dynactin subunit 1, [RH, Score=642, Expect=0.0]} {Mouse: ENSMUSG00000031865, Dctn1, dynactin 1, [RH, Score=611, Expect=0.0]} {Dmel: FBgn0001108, DCTN1-p150, Dynactin 1, p150 subunit, [RH, Score=503, Expect=1e-155]} {Celegans: WBGene00001017, dnc-1, DyNactin Complex component, [RH, Score=285, Expect=2e-78]} {Smed: dd_Smed_v6_4065_0_1, dd_Smed_v6_4065_0_1, [RH, Score=484, Expect=8e-150]} {RNA1509_3552} {RNA1310_1904} {RNA815_2756} |
| 5. | MligTC455_27590 | 776 | 16.16 | Mlig455_052400, Mlig455_069548 | Neo: - Age: logFC(26M/2M)=0.503 |
0.972 | - | - | - | - | 0.972 | - | Mlig455_052400 {REF} {Length: 574} {RNA1509_47491} {RNA1310_60811} {RNA815_1602} Mlig455_069548 {REF} {Length: 877} {Pfam: Protein of unknown function (DUF445) [PF04286.14, score=23.1]} {RNA1509_47491} {RNA1310_60811} {RNA815_1602} |
|
| 6. | MligTC455_35384 | 1354 | 28.21 | Mlig455_017265 | Neo: Irradiation Age: - |
MPPED1 | 0.968 | - | - | - | - | 0.968 | - | Mlig455_017265 {REF} {Length: 2106} {Human: ENSG00000186732, MPPED1, metallophosphoesterase domain containing 1, [Score=72.8, Expect=7e-14]; ENSG00000066382, MPPED2, metallophosphoesterase domain containing 2, [Score=72.4, Expect=5e-14]} {Mouse: ENSMUSG00000016386, Mpped2, metallophosphoesterase domain containing 2, [Score=72.8, Expect=3e-14]; ENSMUSG00000041708, Mpped1, metallophosphoesterase domain containing 1, [Score=72.8, Expect=4e-14]} {Celegans: WBGene00019479, K07C11.7, UPF0046 protein K07C11.7, [Score=70.9, Expect=7e-14]} {Smed: dd_Smed_v6_9610_0_1, dd_Smed_v6_9610_0_1, [RH, Score=129, Expect=3e-35]} {RNA1509_31891, RNA1509_35651, RNA1509_55357, RNA1509_8395} {RNA1310_9507, RNA1509_31891, RNA1509_35651, RNA1509_55357, RNA1509_8395} {RNA1509_31891, RNA1509_35651, RNA1509_55357, RNA1509_8395, RNA815_4279.2} |
| 7. | MligTC455_42981 | 670 | 13.97 | Mlig455_060869 | Neo: - Age: Up-Down-Down |
TRIO | 0.966 | - | - | - | - | 0.966 | - | Mlig455_060869 {REF} {Length: 8598} {TRANSSPLICED} {Pfam: RhoGEF domain [PF00621.22, score=187.1]; Spectrin repeat [PF00435.23, score=60.5]; Pleckstrin homology domain [PF15411.8, score=24.0]} {Human: ENSG00000038382, TRIO, trio Rho guanine nucleotide exchange factor, [RH, Score=897, Expect=0.0]; ENSG00000160145, KALRN, kalirin RhoGEF kinase, [RH, Score=880, Expect=0.0]} {Mouse: ENSMUSG00000022263, Trio, triple functional domain (PTPRF interacting), [RH, Score=898, Expect=0.0]; ENSMUSG00000061751, Kalrn, kalirin, RhoGEF kinase, [RH, Score=877, Expect=0.0]} {Dmel: FBgn0024277, trio, [RH, Score=805, Expect=0.0]} {Celegans: WBGene00006805, unc-73, Guanine nucleotide exchange factor UNC-73B, [RH, Score=456, Expect=3e-129]} {Smed: dd_Smed_v6_5483_0_1, dd_Smed_v6_5483_0_1, [RH, Score=1088, Expect=0.0]} {RNA1509_3899, RNA1509_56004} {RNA1310_197.1, RNA1509_3899, RNA1509_56004} {RNA1509_3899, RNA1509_56004, RNA815_566.1} |
| 8. | MligTC455_46931 | 1052 | 21.92 | Mlig455_017068 | Neo: - Age: - |
EML1 | 0.963 | - | - | - | 0.963 | - | - | Mlig455_017068 {REF} {Length: 5056} {Pfam: WD domain, G-beta repeat [PF00400.34, score=97.1]; HELP motif [PF03451.16, score=89.4]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=36.3]} {Human: ENSG00000066629, EML1, echinoderm microtubule associated protein like 1, [RH, Score=886, Expect=0.0]} {Mouse: ENSMUSG00000058070, Eml1, echinoderm microtubule associated protein like 1, [RH, Score=879, Expect=0.0]; ENSMUSG00000040811, Eml2, echinoderm microtubule associated protein like 2, [RH, Score=837, Expect=0.0]} {Dmel: FBgn0259099, DCX-EMAP, Doublecortin-domain-containing echinoderm-microtubule-associated protein, [RH, Score=420, Expect=4e-131]} {Celegans: WBGene00001248, elp-1, Echinoderm microtubule-associated protein-like elp-1, [Score=326, Expect=7e-98]} {Smed: dd_Smed_v6_2493_0_2, dd_Smed_v6_2493_0_2, [RH, Score=846, Expect=0.0]} {RNA1509_58705} {RNA1310_5796.1} {RNA815_2105} |
| 9. | MligTC455_51142 | 651 | 13.56 | Mlig455_065080 | Neo: - Age: - |
0.96 | - | - | - | 0.960 | - | - | Mlig455_065080 {REF} {Length: 1039} {NoTransDecoderORF} {RNA1509_14530} {RNA1310_19556.1, RNA1509_14530} {RNA1509_14530, RNA815_17427} | |
| 10. | MligTC455_51180 | 590 | 12.29 | Mlig455_012498, Mlig455_012587 | Neo: - Age: - |
0.96 | - | - | - | 0.960 | - | - | Mlig455_012498 {REF} {Length: 3214} {TRANSSPLICED} {Pfam: RUN domain [PF02759.21, score=55.2]} {Smed: dd_Smed_v6_12193_0_1, dd_Smed_v6_12193_0_1, [RH, Score=58.2, Expect=1e-08]} {RNA1509_18736} {RNA1310_14745, RNA1509_18736} {RNA1509_18736, RNA815_5188} Mlig455_012587 {REF} {Length: 3216} {TRANSSPLICED} {Pfam: RUN domain [PF02759.21, score=52.3]} {Smed: dd_Smed_v6_6417_0_1, dd_Smed_v6_6417_0_1, [RH, Score=52.8, Expect=4e-07]} {RNA1509_18736} {RNA1310_14745} {RNA815_5188} |
|
| 11. | MligTC455_40677 | 1364 | 28.42 | Mlig455_065228 | Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.383 Region-specific R5: 1.783 Region-enriched R2: 1.313/0.02638 Regeneration-enriched R6: 2.663 |
RBPMS | 0.958 | - | - | - | - | 0.958 | - | Mlig455_065228 {REF} {Length: 1378} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=52.0]} {Human: ENSG00000157110, RBPMS, RNA binding protein, mRNA processing factor, [RH, Score=133, Expect=2e-37]} {Mouse: ENSMUSG00000031586, Rbpms, RNA binding protein gene with multiple splicing, [RH, Score=131, Expect=1e-36]; ENSMUSG00000032387, Rbpms2, RNA binding protein with multiple splicing 2, [RH, Score=126, Expect=4e-35]} {Dmel: FBgn0263995, cpo, couch potato, [RH, Score=187, Expect=3e-53]} {Celegans: WBGene00003172, mec-8, Mec-8 protein, [RH, Score=148, Expect=3e-42]} {Smed: dd_Smed_v6_4296_0_3, dd_Smed_v6_4296_0_3, [RH, Score=162, Expect=1e-47]} {RNA1509_3464} {RNA1310_16276} {RNA815_4041.1} |
| 12. | MligTC455_32872 | 223 | 4.64 | Mlig455_028341 | Neo: - Age: - |
0.956 | - | - | - | - | - | 0.956 | Mlig455_028341 {REF} {Length: 2114} {Pfam: Carboxysome shell peptide mid-region [PF12288.10, score=20.7]} {RNA1509_29488} {RNA1310_45860.1} {RNA815_25627} | |
| 13. | MligTC455_26646 | 1270 | 26.47 | Mlig455_036193, Mlig455_036200 | Neo: Irradiation Age: - Region-enriched R4: 2.027/0.00054 Regeneration-downregulated R4: -2.228 Regeneration-depleted R4: -2.228 |
GIPC3, PTPN23 | 0.951 | - | - | - | - | - | 0.951 | Mlig455_036193 {REF} {Length: 6626} {Pfam: Protein-tyrosine phosphatase [PF00102.29, score=62.9]} {Human: ENSG00000179855, GIPC3, GIPC PDZ domain containing family member 3, [Score=58.9, Expect=7e-08]} {Mouse: ENSMUSG00000050463, Krt78, keratin 78, [Score=70.9, Expect=1e-11]} {Dmel: FBgn0052656, Muc11A, Mucin 11A, [Score=99.8, Expect=1e-20]} {Celegans: WBGene00021507, Y41D4A.5, Protein-tyrosine-phosphatase, [Score=54.7, Expect=3e-07]} {Smed: dd_Smed_v6_3351_0_2, dd_Smed_v6_3351_0_2, [Score=126, Expect=5e-29]} {RNA1509_13027, RNA1509_26323, RNA1509_55968} {RNA1310_12276.2, RNA1509_13027, RNA1509_26323, RNA1509_55968} {RNA1509_13027, RNA1509_26323, RNA1509_55968, RNA815_6413} Mlig455_036200 {REF} {Length: 8454} {Pfam: BRO1-like domain [PF03097.20, score=305.8]; ALIX V-shaped domain binding to HIV [PF13949.8, score=96.6]; Protein-tyrosine phosphatase [PF00102.29, score=75.4]} {Human: ENSG00000076201, PTPN23, protein tyrosine phosphatase, non-receptor type 23, [RH, Score=408, Expect=1e-115]} {Mouse: ENSMUSG00000036057, Ptpn23, protein tyrosine phosphatase, non-receptor type 23, [RH, Score=412, Expect=5e-117]} {Dmel: FBgn0036448, mop, myopic, [RH, Score=371, Expect=1e-103]} {Celegans: WBGene00001215, ego-2, Enhancer of Glp-One (Glp-1); Enhancer of glp-1, [RH, Score=260, Expect=1e-69]} {Smed: dd_Smed_v6_3351_0_1, dd_Smed_v6_3351_0_1, [RH, Score=424, Expect=2e-121]} {RNA1509_6410} {RNA1310_2882.1} {RNA815_3253.1} |
| 14. | MligTC455_30858 | 1785 | 37.19 | Mlig455_035993, Mlig455_047660 | Neo: Irradiation Age: - |
0.951 | - | - | - | - | 0.951 | - | Mlig455_035993 {REF} {Length: 5091} {Pfam: FLYWCH zinc finger domain [PF04500.18, score=23.3]} {Smed: dd_Smed_v6_3827_0_1, dd_Smed_v6_3827_0_1, [RH, Score=83.6, Expect=1e-16]} {RNA1509_21949, RNA1509_8756} {RNA1310_8254, RNA1509_21949, RNA1509_8756} {RNA1509_21949, RNA1509_8756, RNA815_13497} Mlig455_047660 {REF} {Length: 5013} {Pfam: FLYWCH zinc finger domain [PF04500.18, score=23.3]} {Smed: dd_Smed_v6_3827_0_1, dd_Smed_v6_3827_0_1, [RH, Score=83.6, Expect=9e-17]} {RNA1509_8756} {RNA1310_8254} {RNA815_13497} |
|
| 15. | MligTC455_46975 | 302 | 6.3 | Mlig455_048910 | Neo: - Age: - |
0.951 | - | - | - | - | - | 0.951 | Mlig455_048910 {REF} {Length: 3517} {TRANSSPLICED} {RNA1509_22566} {RNA1310_4083.1, RNA1509_22566} {RNA1509_22566, RNA815_16114} |
Berezikov Lab - 2020-2021 © ERIBA