M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_19294

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_19294 35 0.73 Mlig455_044403

Neo: -

Age: -

Region-enriched R4: 4.059/0.01568

 CLEC6A Mlig455_044403 {REF} {Length: 1224} {Human: ENSG00000205846, CLEC6A, C-type lectin domain containing 6A, [Score=46.6, Expect=1e-05]} {RNA1310_49243} {RNA815_28288}

Cumulative graph for MligTC455_19294

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.959 0.982 1.00000 1.00000
RegionR2 -1.262 0.982 0.99956 1.00000
RegionR3 0.185 0.982 1.00000 1.00000
RegionR4 4.059 0.982 0.00169 0.01568
RegionR5 1.884 0.982 0.02948 0.12803
RegionR6 -0.844 0.982 0.84300 1.00000
RegionR7 -2.601 0.982 0.99983 1.00000
RegionR8 0.538 0.982 0.99976 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.498 0.982 1.00000 1.00000
RegenerationR2 -2.929 0.982 0.00047 0.02943
RegenerationR3 -3.108 0.982 0.86001 1.00000
RegenerationR4 -2.544 0.982 0.05329 0.37084
RegenerationR5 -2.073 0.982 0.07802 0.43570
RegenerationR6 -0.314 0.982 0.59406 0.86593
RegenerationBL -0.312 0.982 0.99160 1.00000
RegenerationTP -2.696 0.982 1.00000 1.00000


Genes with expression patterns similar to MligTC455_19294

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_19294 35 0.73 Mlig455_044403

Neo: -

Age: -

Region-enriched R4: 4.059/0.01568

 CLEC6A 2 - - 1.000 - 1.000 - Mlig455_044403 {REF} {Length: 1224} {Human: ENSG00000205846, CLEC6A, C-type lectin domain containing 6A, [Score=46.6, Expect=1e-05]} {RNA1310_49243} {RNA815_28288}
2. MligTC455_34066 149 3.1 Mlig455_069292

Neo: -

Age: -

 0.976 - - 0.976 - - - Mlig455_069292 {REF} {Length: 832} {NoTransDecoderORF} {RNA1509_20753} {RNA1310_16791} {RNA815_12674.1}
3. MligTC455_37811 192 3.99 Mlig455_010190, Mlig455_058688

Neo: -

Age: Down-Up-Down

 0.974 - - 0.974 - - -

Mlig455_010190 {REF} {Length: 2948} {Smed: dd_Smed_v6_62611_0_1, dd_Smed_v6_62611_0_1, [RH, Score=71.6, Expect=3e-15]} {RNA1509_46223} {RNA1310_14882} {RNA815_30586}

Mlig455_058688 {REF} {Length: 3085} {Smed: dd_Smed_v6_62611_0_1, dd_Smed_v6_62611_0_1, [RH, Score=71.6, Expect=3e-15]} {RNA1509_46223} {RNA1310_14882} {RNA815_30586}
4. MligTC455_26679 67 1.4 Mlig455_064775

Neo: -

Age: Up-Down-Down

 SDC2 0.97 - - 0.970 - - - Mlig455_064775 {REF} {Length: 2105} {Pfam: Syndecan domain [PF01034.22, score=59.6]; Thyroglobulin type-1 repeat [PF00086.20, score=19.8]; Glycophorin A [PF01102.20, score=19.0]} {Human: ENSG00000169439, SDC2, syndecan 2, [RH, Score=62.0, Expect=7e-11]} {Mouse: ENSMUSG00000020592, Sdc1, syndecan 1, [RH, Score=60.5, Expect=9e-10]; ENSMUSG00000017009, Sdc4, syndecan 4, [RH, Score=60.5, Expect=3e-10]; ENSMUSG00000022261, Sdc2, syndecan 2, [RH, Score=58.5, Expect=1e-09]} {Smed: dd_Smed_v6_4546_0_1, dd_Smed_v6_4546_0_1, [RH, Score=63.5, Expect=7e-12]} {RNA1310_55436} {RNA815_23432}
5. MligTC455_24581 31 0.66 Mlig455_062849

Neo: -

Age: -

 0.969 - - 0.969 - - - Mlig455_062849 {REF} {Length: 1112} {NoTransDecoderORF} {RNA1310_45314.1} {RNA815_18536}
6. MligTC455_21325 36 0.75 Mlig455_053949

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.422

 SLC4A10 0.967 - - 0.967 - - - Mlig455_053949 {REF} {Length: 5641} {TRANSSPLICED} {Pfam: HCO3- transporter family [PF00955.23, score=719.0]; Band 3 cytoplasmic domain [PF07565.15, score=297.5]; Sulfate permease family [PF00916.22, score=19.2]} {Human: ENSG00000144290, SLC4A10, solute carrier family 4 member 10, [Score=947, Expect=0.0]; ENSG00000050438, SLC4A8, solute carrier family 4 member 8, [Score=935, Expect=0.0]} {Mouse: ENSMUSG00000023032, Slc4a8, solute carrier family 4 (anion exchanger), member 8, [Score=946, Expect=0.0]; ENSMUSG00000026904, Slc4a10, solute carrier family 4, sodium bicarbonate cotransporter-like, member 10, [Score=946, Expect=0.0]} {Dmel: FBgn0259111, Ndae1, Na[+]-driven anion exchanger 1, [Score=634, Expect=0.0]} {Celegans: WBGene00009920, abts-1, Anion exchange protein, [Score=612, Expect=0.0]} {Smed: dd_Smed_v6_3003_0_2, dd_Smed_v6_3003_0_2, [Score=1208, Expect=0.0]} {RNA1509_21197} {RNA1310_2601, RNA1509_21197} {RNA1509_21197, RNA815_7793.1}
7. MligTC455_52458 63 1.3 Mlig455_059320

Neo: -

Age: -

 0.964 - - 0.964 - - - Mlig455_059320 {REF} {Length: 1622} {Pfam: Universal stress protein family [PF00582.28, score=92.6]} {Smed: dd_Smed_v6_402_1_1, dd_Smed_v6_402_1_1, [Score=97.4, Expect=1e-26]} {RNA1509_15153} {RNA1310_55094} {RNA815_23718.1}
8. MligTC455_10509 11 0.23 Mlig455_000014, Mlig455_063720

Neo: -

Age: -

 0.961 - - 0.961 - - -

Mlig455_000014 {REF} {Length: 979} {RNA1509_48973} {RNA1310_38998.3} {RNA815_31898}

Mlig455_063720 {REF} {Length: 1126} {RNA1509_48973} {RNA1310_38998.3} {RNA815_31898}
9. MligTC455_09713 21 0.43 Mlig455_027637

Neo: -

Age: -

 KREMEN2 0.958 - - 0.958 - - - Mlig455_027637 {REF} {Length: 1298} {Pfam: WSC domain [PF01822.21, score=51.8]} {Human: ENSG00000131650, KREMEN2, kringle containing transmembrane protein 2, [Score=45.8, Expect=8e-06]} {RNA1509_53783} {RNA1310_34968.1} {RNA815_24434}
10. MligTC455_13421 86 1.79 Mlig455_036504, Mlig455_069144

Neo: -

Age: -

 SYT17 0.957 - - 0.957 - - -

Mlig455_036504 {REF} {Length: 2390} {Pfam: C2 domain [PF00168.32, score=84.3]} {Human: ENSG00000103528, SYT17, synaptotagmin 17, [Score=137, Expect=5e-35]} {Mouse: ENSMUSG00000058420, Syt17, synaptotagmin XVII, [Score=137, Expect=6e-35]} {Dmel: FBgn0028400, Syt4, Synaptotagmin 4, [Score=101, Expect=1e-22]} {Celegans: WBGene00004922, snt-2, Synaptotagmin 2, [Score=105, Expect=2e-24]} {Smed: dd_Smed_v6_19213_0_1, dd_Smed_v6_19213_0_1, [RH, Score=124, Expect=2e-30]} {RNA1310_17303} {RNA815_33031}

Mlig455_069144 {REF} {Length: 1355} {Pfam: C2 domain [PF00168.32, score=84.3]} {Human: ENSG00000103528, SYT17, synaptotagmin 17, [Score=137, Expect=5e-35]} {Mouse: ENSMUSG00000058420, Syt17, synaptotagmin XVII, [Score=137, Expect=6e-35]} {Dmel: FBgn0028400, Syt4, Synaptotagmin 4, [Score=101, Expect=1e-22]} {Celegans: WBGene00004922, snt-2, Synaptotagmin 2, [Score=105, Expect=2e-24]} {Smed: dd_Smed_v6_19213_0_1, dd_Smed_v6_19213_0_1, [RH, Score=124, Expect=2e-30]} {RNA1310_17303} {RNA815_33031}
11. MligTC455_31104 22 0.46 Mlig455_040032, Mlig455_070983

Neo: -

Age: -

 SYT17 0.956 - - 0.956 - - -

Mlig455_040032 {REF} {Length: 2712} {Pfam: C2 domain [PF00168.32, score=79.2]} {Human: ENSG00000103528, SYT17, synaptotagmin 17, [Score=127, Expect=1e-30]} {Mouse: ENSMUSG00000058420, Syt17, synaptotagmin XVII, [Score=126, Expect=1e-30]} {Dmel: FBgn0028400, Syt4, Synaptotagmin 4, [Score=88.6, Expect=2e-18]} {Celegans: WBGene00004922, snt-2, Synaptotagmin 2, [Score=94.0, Expect=1e-20]} {Smed: dd_Smed_v6_19213_0_1, dd_Smed_v6_19213_0_1, [Score=96.7, Expect=3e-21]} {RNA1310_17303}

Mlig455_070983 {REF} {Length: 1947} {Pfam: C2 domain [PF00168.32, score=79.2]} {Human: ENSG00000103528, SYT17, synaptotagmin 17, [Score=127, Expect=1e-30]} {Mouse: ENSMUSG00000058420, Syt17, synaptotagmin XVII, [Score=126, Expect=1e-30]} {Dmel: FBgn0028400, Syt4, Synaptotagmin 4, [Score=88.6, Expect=2e-18]} {Celegans: WBGene00004922, snt-2, Synaptotagmin 2, [Score=94.0, Expect=1e-20]} {Smed: dd_Smed_v6_19213_0_1, dd_Smed_v6_19213_0_1, [Score=96.7, Expect=3e-21]} {RNA1310_17303}
12. MligTC455_29850 34 0.72 Mlig455_056420

Neo: -

Age: -

 0.954 - - 0.954 - - - Mlig455_056420 {REF} {Length: 636} {Pfam: Transcription factor TFIID (or TATA-binding protein, TBP) [PF00352.23, score=38.1]} {Smed: dd_Smed_v6_3242_0_1, dd_Smed_v6_3242_0_1, [Score=42.4, Expect=9e-06]} {RNA1509_13774} {RNA1310_41660} {RNA815_55778}
13. MligTC455_12912 311 6.47 Mlig455_039330, Mlig455_064070, Mlig455_064994

Neo: -

Age: -

Regeneration-downregulated R6: -5.737

Regeneration-depleted R6: -5.737

 0.953 - - 0.953 - - -

Mlig455_039330 {REF} {Length: 175} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_39872} {RNA1310_118613} {RNA815_50179}

Mlig455_064070 {REF} {Length: 175} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_39872} {RNA1310_118613} {RNA815_50179}

Mlig455_064994 {REF} {Length: 176} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_39872} {RNA1310_118613} {RNA815_50179}
14. MligTC455_17613 16 0.34 Mlig455_057846

Neo: -

Age: -

 ADRB2 0.952 - - 0.952 - - - Mlig455_057846 {REF} {Length: 2337} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=166.9]; Serpentine type 7TM GPCR chemoreceptor Srx [PF10328.11, score=20.3]} {Human: ENSG00000169252, ADRB2, adrenoceptor beta 2, [Score=114, Expect=3e-27]} {Mouse: ENSMUSG00000045730, Adrb2, adrenergic receptor, beta 2, [Score=115, Expect=1e-27]} {Dmel: FBgn0004841, TkR86C, Tachykinin-like receptor at 86C, [Score=126, Expect=3e-31]} {Celegans: WBGene00022004, npr-22, NeuroPeptide Receptor family, [Score=115, Expect=5e-28]} {Smed: dd_Smed_v6_22653_0_1, dd_Smed_v6_22653_0_1, [Score=239, Expect=2e-74]} {RNA1310_68068} {RNA815_49974}
15. MligTC455_21754 21 0.44 Mlig455_021167

Neo: -

Age: Down-Up-Down

 0.95 - - 0.950 - - - Mlig455_021167 {REF} {Length: 1412} {Pfam: F5/8 type C domain [PF00754.27, score=37.1]} {RNA1310_25631} {RNA815_14716}
16. MligTC455_35862 39 0.82 Mlig455_025750

Neo: -

Age: -

 0.95 - - 0.950 - - - Mlig455_025750 {REF} {Length: 4430} {Pfam: Interferon-related protein conserved region [PF04836.14, score=35.0]} {RNA1509_56926} {RNA1310_49079} {RNA815_25175.1}
17. MligTC455_38178 19 0.39 Mlig455_025460

Neo: -

Age: -

 SIX4 0.95 - - 0.950 - - - Mlig455_025460 {REF} {Length: 2329} {Pfam: Transcriptional regulator, SIX1, N-terminal SD domain [PF16878.7, score=141.7]; Homeodomain [PF00046.31, score=57.9]; Homeobox KN domain [PF05920.13, score=40.9]} {Human: ENSG00000100625, SIX4, SIX homeobox 4, [RH, Score=271, Expect=6e-84]} {Mouse: ENSMUSG00000034460, Six4, sine oculis-related homeobox 4, [RH, Score=270, Expect=1e-83]} {Dmel: FBgn0027364, Six4, [RH, Score=254, Expect=2e-81]} {Celegans: WBGene00000454, ceh-33, Homeobox protein ceh-33, [Score=202, Expect=3e-63]} {Smed: dd_Smed_v6_37930_0_1, dd_Smed_v6_37930_0_1, [RH, Score=244, Expect=7e-79]}
18. MligTC455_41541 30 0.62 Mlig455_064895

Neo: -

Age: -

 GLUL 0.95 - - 0.950 - - - Mlig455_064895 {REF} {Length: 1633} {Pfam: Glutamine synthetase, catalytic domain [PF00120.26, score=57.2]; Glutamine synthetase, beta-Grasp domain [PF03951.21, score=45.1]} {Human: ENSG00000135821, GLUL, glutamate-ammonia ligase, [RH, Score=503, Expect=4e-177]} {Mouse: ENSMUSG00000026473, Glul, glutamate-ammonia ligase (glutamine synthetase), [RH, Score=503, Expect=2e-179]} {Dmel: FBgn0001145, Gs2, Glutamine synthetase 2, [RH, Score=510, Expect=0.0]} {Celegans: WBGene00001604, gln-3, Glutamine synthetase, [RH, Score=511, Expect=0.0]} {Smed: dd_Smed_v6_896_0_1, dd_Smed_v6_896_0_1, [RH, Score=546, Expect=0.0]} {RNA1509_47000} {RNA1310_22329.1, RNA1509_47000} {RNA1509_47000, RNA815_4116.6}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA