TomoSeq data search

Data search

Results for MligTC455_12912

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_12912

311

6.47

Mlig455_039330, Mlig455_064070, Mlig455_064994

Neo: -

Age: -

Regeneration-downregulated R6: -5.737

Regeneration-depleted R6: -5.737

Mlig455_039330 {REF} {Length: 175} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_39872} {RNA1310_118613} {RNA815_50179}

Mlig455_064070 {REF} {Length: 175} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_39872} {RNA1310_118613} {RNA815_50179}

Mlig455_064994 {REF} {Length: 176} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_39872} {RNA1310_118613} {RNA815_50179}

Cumulative graph for MligTC455_12912

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-6.559	3.087	0.10362	0.67760
RegionR2	1.115	3.087	0.33433	0.72599
RegionR3	1.474	3.087	0.12356	0.60617
RegionR4	0.547	3.087	0.60586	0.91810
RegionR5	-1.835	3.087	0.99839	1.00000
RegionR6	0.594	3.087	0.55450	1.00000
RegionR7	2.44	3.087	0.00351	0.08542
RegionR8	2.224	3.087	0.02208	0.28976

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	1.16	3.087	0.99996	1.00000
RegenerationR2	0.288	3.087	0.70672	0.95858
RegenerationR3	-0.701	3.087	0.39696	0.80099
RegenerationR4	-0.101	3.087	0.90604	1.00000
RegenerationR5	2.326	3.087	0.00875	0.16902
RegenerationR6	-5.737	3.087	0.00012	0.00990	Specific for R6: -5.737
RegenerationBL	-2.633	3.087	0.02407	0.17039
RegenerationTP	-1.356	3.087	0.15344	0.57942

Genes with expression patterns similar to MligTC455_12912

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_12912	311	6.47	Mlig455_039330, Mlig455_064070, Mlig455_064994	Neo: - Age: - Regeneration-downregulated R6: -5.737 Regeneration-depleted R6: -5.737		6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_039330 {REF} {Length: 175} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_39872} {RNA1310_118613} {RNA815_50179} Mlig455_064070 {REF} {Length: 175} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_39872} {RNA1310_118613} {RNA815_50179} Mlig455_064994 {REF} {Length: 176} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_39872} {RNA1310_118613} {RNA815_50179}
2.	MligTC455_52458	63	1.3	Mlig455_059320	Neo: - Age: -		1.795	-	-	0.951	-	0.844	-	Mlig455_059320 {REF} {Length: 1622} {Pfam: Universal stress protein family [PF00582.28, score=92.6]} {Smed: dd_Smed_v6_402_1_1, dd_Smed_v6_402_1_1, [Score=97.4, Expect=1e-26]} {RNA1509_15153} {RNA1310_55094} {RNA815_23718.1}
3.	MligTC455_24581	31	0.66	Mlig455_062849	Neo: - Age: -		0.98	-	-	0.980	-	-	-	Mlig455_062849 {REF} {Length: 1112} {NoTransDecoderORF} {RNA1310_45314.1} {RNA815_18536}
4.	MligTC455_24936	37	0.77	Mlig455_002505	Neo: - Age: -	NAA40	0.975	-	-	0.975	-	-	-	Mlig455_002505 {REF} {Length: 1146} {Pfam: Acetyltransferase (GNAT) family [PF00583.27, score=35.1]; Acetyltransferase (GNAT) domain [PF13508.9, score=23.6]; FR47-like protein [PF08445.12, score=19.3]; Acetyltransferase (GNAT) domain [PF13420.9, score=18.8]} {Human: ENSG00000110583, NAA40, N(alpha)-acetyltransferase 40, NatD catalytic subunit, [Score=84.3, Expect=4e-20]} {Mouse: ENSMUSG00000024764, Naa40, N(alpha)-acetyltransferase 40, NatD catalytic subunit, [Score=84.0, Expect=3e-20]} {Dmel: FBgn0039687, Naa40, N(alpha)-acetyltransferase 40, [Score=62.4, Expect=2e-12]} {Celegans: WBGene00021392, Y38A10A.7, [Score=84.0, Expect=2e-20]} {Smed: dd_Smed_v6_5816_0_1, dd_Smed_v6_5816_0_1, [Score=89.7, Expect=7e-23]} {RNA1509_41870} {RNA1310_14010.1, RNA1509_41870} {RNA1509_41870, RNA815_52371}
5.	MligTC455_37811	192	3.99	Mlig455_010190, Mlig455_058688	Neo: - Age: Down-Up-Down		0.969	-	-	0.969	-	-	-	Mlig455_010190 {REF} {Length: 2948} {Smed: dd_Smed_v6_62611_0_1, dd_Smed_v6_62611_0_1, [RH, Score=71.6, Expect=3e-15]} {RNA1509_46223} {RNA1310_14882} {RNA815_30586} Mlig455_058688 {REF} {Length: 3085} {Smed: dd_Smed_v6_62611_0_1, dd_Smed_v6_62611_0_1, [RH, Score=71.6, Expect=3e-15]} {RNA1509_46223} {RNA1310_14882} {RNA815_30586}
6.	MligTC455_09518	5	0.1	Mlig455_016254	Neo: - Age: -		0.962	-	-	0.962	-	-	-	Mlig455_016254 {REF} {Length: 629} {NoTransDecoderORF} {RNA1310_114380} {RNA815_51822}
7.	MligTC455_38178	19	0.39	Mlig455_025460	Neo: - Age: -	SIX4	0.962	-	-	0.962	-	-	-	Mlig455_025460 {REF} {Length: 2329} {Pfam: Transcriptional regulator, SIX1, N-terminal SD domain [PF16878.7, score=141.7]; Homeodomain [PF00046.31, score=57.9]; Homeobox KN domain [PF05920.13, score=40.9]} {Human: ENSG00000100625, SIX4, SIX homeobox 4, [RH, Score=271, Expect=6e-84]} {Mouse: ENSMUSG00000034460, Six4, sine oculis-related homeobox 4, [RH, Score=270, Expect=1e-83]} {Dmel: FBgn0027364, Six4, [RH, Score=254, Expect=2e-81]} {Celegans: WBGene00000454, ceh-33, Homeobox protein ceh-33, [Score=202, Expect=3e-63]} {Smed: dd_Smed_v6_37930_0_1, dd_Smed_v6_37930_0_1, [RH, Score=244, Expect=7e-79]}
8.	MligTC455_19210	100	2.09	Mlig455_052574	Neo: - Age: logFC(26M/2M)=-0.927		0.96	0.960	-	-	-	-	-	Mlig455_052574 {REF} {Length: 1407} {Celegans: WBGene00019180, H10D18.5, [RH, Score=62.4, Expect=6e-11]} {Smed: dd_Smed_v6_10251_0_1, dd_Smed_v6_10251_0_1, [RH, Score=95.9, Expect=2e-23]} {RNA1310_25906} {RNA815_14581.1}
9.	MligTC455_22481	83	1.72	Mlig455_019186	Neo: - Age: -		0.959	-	-	-	-	0.959	-	Mlig455_019186 {REF} {Length: 1281} {RNA1509_29601} {RNA1310_30845} {RNA815_46080.1}
10.	MligTC455_47146	157	3.28	Mlig455_053968	Neo: - Age: logFC(26M/2M)=-0.429 Region-enriched R4: 3.868/0.00961	TTC24	0.957	-	-	-	-	0.957	-	Mlig455_053968 {REF} {Length: 4078} {TRANSSPLICED} {Pfam: Tetratricopeptide repeat [PF13424.8, score=74.2]; Tetratricopeptide repeat [PF07719.19, score=57.5]; Tetratricopeptide repeat [PF00515.30, score=50.0]; Tetratricopeptide repeat [PF13176.8, score=49.3]; Tetratricopeptide repeat [PF13181.8, score=31.7]} {Human: ENSG00000187862, TTC24, tetratricopeptide repeat domain 24, [RH, Score=103, Expect=3e-22]} {Mouse: ENSMUSG00000051036, Ttc24, tetratricopeptide repeat domain 24, [RH, Score=67.8, Expect=1e-11]} {RNA1509_7768} {RNA1310_13043} {RNA815_789.1}
11.	MligTC455_18791	15	0.32	Mlig455_018772	Neo: - Age: -		0.953	-	-	-	-	0.953	-	Mlig455_018772 {REF} {Length: 1316} {RNA1310_18536.1} {RNA815_28798}
12.	MligTC455_19294	35	0.73	Mlig455_044403	Neo: - Age: - Region-enriched R4: 4.059/0.01568	CLEC6A	0.953	-	-	0.953	-	-	-	Mlig455_044403 {REF} {Length: 1224} {Human: ENSG00000205846, CLEC6A, C-type lectin domain containing 6A, [Score=46.6, Expect=1e-05]} {RNA1310_49243} {RNA815_28288}
13.	MligTC455_35587	81	1.69	Mlig455_026694, Mlig455_043710	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.544	RTL1	0.952	-	-	0.952	-	-	-	Mlig455_026694 {REF} {Length: 1354} {Pfam: gag-polyprotein putative aspartyl protease [PF13975.8, score=23.9]; Aspartyl protease [PF13650.8, score=20.6]} {RNA1509_52151} {RNA1310_16257} {RNA815_12222} Mlig455_043710 {REF} {Length: 4315} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=104.6]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=98.4]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=82.6]; Integrase zinc binding domain [PF17921.3, score=59.2]; Integrase core domain [PF00665.28, score=49.1]; gag-polyprotein putative aspartyl protease [PF13975.8, score=22.9]; H2C2 zinc finger [PF09337.12, score=20.3]; Aspartyl protease [PF13650.8, score=19.2]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=80.5, Expect=2e-14]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=61.2, Expect=1e-08]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=325, Expect=1e-93]} {RNA1509_52151} {RNA1310_5165, RNA1509_52151} {RNA1509_52151, RNA815_12222}
14.	MligTC455_36686	47	0.97	Mlig455_056861	Neo: - Age: -		0.95	-	-	0.950	-	-	-	Mlig455_056861 {REF} {Length: 6184} {RNA1509_14690} {RNA1310_36097} {RNA815_32539}

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