TomoSeq data search

Data search

Results for MligTC455_19770

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_19770

2036

42.41

Mlig455_044236, Mlig455_044255

Neo: Int S/G2/M

Age: -

Region-enriched R5: 1.412/0.00042
Region-enriched R4: 1.323/0.00806

VMA21

Mlig455_044236 {REF} {Length: 791} {TRANSSPLICED} {Pfam: VMA21-like domain [PF09446.12, score=52.4]} {Human: ENSG00000160131, VMA21, VMA21, vacuolar ATPase assembly factor, [Score=45.4, Expect=1e-06]} {Mouse: ENSMUSG00000073131, Vma21, VMA21 vacuolar H+-ATPase homolog (S. cerevisiae), [Score=43.5, Expect=3e-06]} {Celegans: WBGene00011116, pdcd-2, Vacuolar ATPase assembly integral membrane protein VMA21 homolog, [RH, Score=50.8, Expect=2e-09]} {Smed: dd_Smed_v6_2976_0_1, dd_Smed_v6_2976_0_1, [Score=48.1, Expect=1e-08]} {RNA1509_19501} {RNA1310_35174.1} {RNA815_21706.1}

Mlig455_044255 {REF} {Length: 805} {TRANSSPLICED} {Pfam: VMA21-like domain [PF09446.12, score=52.4]} {Human: ENSG00000160131, VMA21, VMA21, vacuolar ATPase assembly factor, [Score=45.4, Expect=1e-06]} {Mouse: ENSMUSG00000073131, Vma21, VMA21 vacuolar H+-ATPase homolog (S. cerevisiae), [Score=43.5, Expect=3e-06]} {Celegans: WBGene00011116, pdcd-2, Vacuolar ATPase assembly integral membrane protein VMA21 homolog, [RH, Score=50.8, Expect=2e-09]} {Smed: dd_Smed_v6_2976_0_1, dd_Smed_v6_2976_0_1, [Score=48.1, Expect=1e-08]} {RNA1509_19501} {RNA1310_35174.2} {RNA815_21706.1}

Cumulative graph for MligTC455_19770

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-4.281	5.667	0.00004	0.01763
RegionR2	0.574	5.667	0.19350	0.55071
RegionR3	0.462	5.667	0.21519	0.75666
RegionR4	1.323	5.667	0.00072	0.00806
RegionR5	1.412	5.667	0.00002	0.00042
RegionR6	0.633	5.667	0.08650	0.54183
RegionR7	0.621	5.667	0.10274	0.61076
RegionR8	-0.744	5.667	0.15336	0.70985

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-5.875	5.667	0.25438	0.96756
RegenerationR2	-0.099	5.667	0.79227	0.98734
RegenerationR3	-0.351	5.667	0.38668	0.79403
RegenerationR4	-0.697	5.667	0.09185	0.47339
RegenerationR5	-0.663	5.667	0.07974	0.43877
RegenerationR6	-0.983	5.667	0.01837	0.16736
RegenerationBL	-0.423	5.667	0.30114	0.66437
RegenerationTP	0.78	5.667	0.05998	0.39690

Genes with expression patterns similar to MligTC455_19770

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_19770	2036	42.41	Mlig455_044236, Mlig455_044255	Neo: Int S/G2/M Age: - Region-enriched R5: 1.412/0.00042 Region-enriched R4: 1.323/0.00806	VMA21	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_044236 {REF} {Length: 791} {TRANSSPLICED} {Pfam: VMA21-like domain [PF09446.12, score=52.4]} {Human: ENSG00000160131, VMA21, VMA21, vacuolar ATPase assembly factor, [Score=45.4, Expect=1e-06]} {Mouse: ENSMUSG00000073131, Vma21, VMA21 vacuolar H+-ATPase homolog (S. cerevisiae), [Score=43.5, Expect=3e-06]} {Celegans: WBGene00011116, pdcd-2, Vacuolar ATPase assembly integral membrane protein VMA21 homolog, [RH, Score=50.8, Expect=2e-09]} {Smed: dd_Smed_v6_2976_0_1, dd_Smed_v6_2976_0_1, [Score=48.1, Expect=1e-08]} {RNA1509_19501} {RNA1310_35174.1} {RNA815_21706.1} Mlig455_044255 {REF} {Length: 805} {TRANSSPLICED} {Pfam: VMA21-like domain [PF09446.12, score=52.4]} {Human: ENSG00000160131, VMA21, VMA21, vacuolar ATPase assembly factor, [Score=45.4, Expect=1e-06]} {Mouse: ENSMUSG00000073131, Vma21, VMA21 vacuolar H+-ATPase homolog (S. cerevisiae), [Score=43.5, Expect=3e-06]} {Celegans: WBGene00011116, pdcd-2, Vacuolar ATPase assembly integral membrane protein VMA21 homolog, [RH, Score=50.8, Expect=2e-09]} {Smed: dd_Smed_v6_2976_0_1, dd_Smed_v6_2976_0_1, [Score=48.1, Expect=1e-08]} {RNA1509_19501} {RNA1310_35174.2} {RNA815_21706.1}
2.	MligTC455_16544	13972	291.08	Mlig455_066559	Neo: - Age: -	HMCN1	1.861	-	-	-	0.887	0.974	-	Mlig455_066559 {REF} {Length: 2104} {Pfam: von Willebrand factor type A domain [PF00092.30, score=36.8]; von Willebrand factor type A domain [PF13519.8, score=35.6]; von Willebrand factor type A domain [PF13768.8, score=24.2]; VWA domain containing CoxE-like protein [PF05762.16, score=19.4]} {Human: ENSG00000143341, HMCN1, hemicentin 1, [Score=85.5, Expect=2e-17]; ENSG00000238203, VWA7, von Willebrand factor A domain containing 7, [Score=84.3, Expect=4e-17]; ENSG00000234433, VWA7, von Willebrand factor A domain containing 7, [Score=84.3, Expect=4e-17]; ENSG00000223757, VWA7, von Willebrand factor A domain containing 7, [Score=84.3, Expect=4e-17]; ENSG00000230048, VWA7, von Willebrand factor A domain containing 7, [Score=84.3, Expect=4e-17]; ENSG00000204396, VWA7, von Willebrand factor A domain containing 7, [Score=84.3, Expect=4e-17]; ENSG00000227144, VWA7, von Willebrand factor A domain containing 7, [Score=84.0, Expect=4e-17]; ENSG00000148357, HMCN2, hemicentin 2, [Score=82.8, Expect=2e-16]} {Mouse: ENSMUSG00000066842, Hmcn1, hemicentin 1, [Score=85.5, Expect=2e-17]} {Celegans: WBGene00001863, him-4, Hemicentin; High Incidence of Males (Increased X chromosome loss), [Score=100, Expect=1e-22]} {Smed: dd_Smed_v6_1161_0_1, dd_Smed_v6_1161_0_1, [Score=78.2, Expect=1e-15]} {RNA1509_6232} {RNA1310_12097.1} {RNA815_2254.1}
3.	MligTC455_46499	3275	68.23	Mlig455_000184, Mlig455_058441	Neo: - Age: -	TXNL4A	1.67	-	-	0.706	-	0.964	-	Mlig455_000184 {REF} {Length: 707} {TRANSSPLICED} {Pfam: Mitosis protein DIM1 [PF02966.18, score=221.0]; Thioredoxin [PF00085.22, score=24.5]} {Human: ENSG00000141759, TXNL4A, thioredoxin like 4A, [RH, Score=267, Expect=2e-93]} {Mouse: ENSMUSG00000057130, Txnl4a, thioredoxin-like 4A, [RH, Score=267, Expect=1e-93]} {Dmel: FBgn0031601, Dim1, [RH, Score=267, Expect=1e-93]} {Celegans: WBGene00235102, Y54G2A.75, [RH, Score=265, Expect=6e-93]} {Smed: dd_Smed_v6_5223_0_1, dd_Smed_v6_5223_0_1, [RH, Score=271, Expect=2e-95]} {RNA1509_28744} {RNA1310_59342} {RNA815_30323} Mlig455_058441 {REF} {Length: 707} {TRANSSPLICED} {Pfam: Mitosis protein DIM1 [PF02966.18, score=221.0]; Thioredoxin [PF00085.22, score=24.5]} {Human: ENSG00000141759, TXNL4A, thioredoxin like 4A, [RH, Score=267, Expect=2e-93]} {Mouse: ENSMUSG00000057130, Txnl4a, thioredoxin-like 4A, [RH, Score=267, Expect=1e-93]} {Dmel: FBgn0031601, Dim1, [RH, Score=267, Expect=1e-93]} {Celegans: WBGene00235102, Y54G2A.75, [RH, Score=265, Expect=6e-93]} {Smed: dd_Smed_v6_5223_0_1, dd_Smed_v6_5223_0_1, [RH, Score=271, Expect=2e-95]} {RNA1509_19742, RNA1509_28744, RNA1509_38992, RNA1509_8847} {RNA1310_59342, RNA1509_19742, RNA1509_28744, RNA1509_38992, RNA1509_8847} {RNA1509_19742, RNA1509_28744, RNA1509_38992, RNA1509_8847, RNA815_30323}
4.	MligTC455_43497	647	13.47	Mlig455_029738, Mlig455_034882, Mlig455_034894	Neo: - Age: - Region-enriched R2: 2.902/0.02617	RABGGTA	0.954	-	-	-	-	0.954	-	Mlig455_029738 {REF} {Length: 3151} {TRANSSPLICED} {Pfam: Protein prenyltransferase alpha subunit repeat [PF01239.24, score=108.1]; Leucine Rich repeats (2 copies) [PF12799.9, score=25.8]; Leucine rich repeat [PF13855.8, score=23.8]; Transcription factor IIA, alpha/beta subunit [PF03153.15, score=20.4]} {Human: ENSG00000100949, RABGGTA, Rab geranylgeranyltransferase subunit alpha, [RH, Score=194, Expect=4e-54]; ENSG00000285193, RABGGTA, Rab geranylgeranyltransferase subunit alpha, [RH, Score=194, Expect=4e-54]} {Mouse: ENSMUSG00000040472, Rabggta, Rab geranylgeranyl transferase, a subunit, [RH, Score=186, Expect=2e-51]} {Dmel: FBgn0037293, CG12007, [RH, Score=156, Expect=6e-41]} {Celegans: WBGene00019778, M57.2, [RH, Score=145, Expect=5e-37]} {Smed: dd_Smed_v6_7183_0_1, dd_Smed_v6_7183_0_1, [RH, Score=188, Expect=2e-52]} {RNA1509_17726, RNA1509_41376, RNA1509_59074} {RNA1310_7973, RNA1509_17726, RNA1509_41376, RNA1509_59074} {RNA1509_17726, RNA1509_41376, RNA1509_59074, RNA815_12806} Mlig455_034882 {REF} {Length: 2763} {TRANSSPLICED} {Pfam: Protein prenyltransferase alpha subunit repeat [PF01239.24, score=105.7]; Leucine Rich repeats (2 copies) [PF12799.9, score=25.8]; Leucine rich repeat [PF13855.8, score=23.8]; Transcription factor IIA, alpha/beta subunit [PF03153.15, score=18.8]} {Human: ENSG00000100949, RABGGTA, Rab geranylgeranyltransferase subunit alpha, [RH, Score=203, Expect=2e-57]; ENSG00000285193, RABGGTA, Rab geranylgeranyltransferase subunit alpha, [RH, Score=203, Expect=2e-57]} {Mouse: ENSMUSG00000040472, Rabggta, Rab geranylgeranyl transferase, a subunit, [RH, Score=197, Expect=3e-55]} {Dmel: FBgn0037293, CG12007, [RH, Score=158, Expect=8e-42]} {Celegans: WBGene00019778, M57.2, [RH, Score=145, Expect=3e-37]} {Smed: dd_Smed_v6_7183_0_1, dd_Smed_v6_7183_0_1, [RH, Score=182, Expect=2e-50]} {RNA1509_17726} {RNA1310_7973} {RNA815_12806} Mlig455_034894 {REF} {Length: 2483} {TRANSSPLICED} {Pfam: Protein prenyltransferase alpha subunit repeat [PF01239.24, score=107.0]; Protein of unknown function (DUF2722) [PF10846.10, score=19.8]; Copper transport outer membrane protein, MctB [PF11382.10, score=18.9]} {Human: ENSG00000100949, RABGGTA, Rab geranylgeranyltransferase subunit alpha, [RH, Score=170, Expect=1e-47]; ENSG00000285193, RABGGTA, Rab geranylgeranyltransferase subunit alpha, [RH, Score=170, Expect=1e-47]} {Mouse: ENSMUSG00000040472, Rabggta, Rab geranylgeranyl transferase, a subunit, [Score=169, Expect=3e-46]} {Dmel: FBgn0037293, CG12007, [RH, Score=159, Expect=5e-43]} {Celegans: WBGene00019778, M57.2, [RH, Score=149, Expect=4e-39]} {Smed: dd_Smed_v6_7183_0_1, dd_Smed_v6_7183_0_1, [Score=145, Expect=4e-38]} {RNA1509_17726} {RNA1310_6752} {RNA815_12806}
5.	MligTC455_48739	254	5.3	Mlig455_039583	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.287	USP15	0.953	-	-	-	-	0.953	-	Mlig455_039583 {REF} {Length: 985} {TRANSSPLICED} {Pfam: DUSP domain [PF06337.14, score=62.6]} {Human: ENSG00000135655, USP15, ubiquitin specific peptidase 15, [Score=120, Expect=3e-33]} {Mouse: ENSMUSG00000020124, Usp15, ubiquitin specific peptidase 15, [Score=119, Expect=1e-30]} {RNA1509_25487} {RNA1310_32431} {RNA815_1764.4}

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