Data search
Results for MligTC455_20414
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_20414 | 341 | 7.11 | Mlig455_001857 | Neo: - Age: - |
U2AF2 | Mlig455_001857 {REF} {Length: 4922} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=110.2]; Occluded RNA-recognition motif [PF16842.7, score=24.1]; RNA recognition motif [PF16367.7, score=20.0]} {Human: ENSG00000063244, U2AF2, U2 small nuclear RNA auxiliary factor 2, [RH, Score=512, Expect=5e-179]} {Mouse: ENSMUSG00000030435, U2af2, U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2, [RH, Score=512, Expect=3e-179]} {Dmel: FBgn0005411, U2af50, U2 small nuclear riboprotein auxiliary factor 50, [RH, Score=560, Expect=0.0]} {Celegans: WBGene00006697, uaf-1, Splicing factor U2AF 65 kDa subunit, [RH, Score=449, Expect=2e-154]} {Smed: dd_Smed_v6_3590_0_1, dd_Smed_v6_3590_0_1, [RH, Score=558, Expect=0.0]} {RNA1509_25540, RNA1509_35646, RNA1509_3800, RNA1509_39764, RNA1509_45067} {RNA1310_13147.1, RNA1509_25540, RNA1509_35646, RNA1509_3800, RNA1509_39764, RNA1509_45067} {RNA1509_25540, RNA1509_35646, RNA1509_3800, RNA1509_39764, RNA1509_45067, RNA815_6631} |
Cumulative graph for MligTC455_20414
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -0.423 | 3.235 | 0.78284 | 1.00000 | |
| RegionR2 | 0.416 | 3.235 | 0.48821 | 0.87051 | |
| RegionR3 | 0.437 | 3.235 | 0.30614 | 0.84619 | |
| RegionR4 | -0.168 | 3.235 | 0.77631 | 1.00000 | |
| RegionR5 | -0.868 | 3.235 | 0.05419 | 0.19850 | |
| RegionR6 | -0.633 | 3.235 | 0.20398 | 0.77795 | |
| RegionR7 | 0.642 | 3.235 | 0.27927 | 0.91175 | |
| RegionR8 | 0.597 | 3.235 | 0.41882 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | 1.647 | 3.235 | 0.40231 | 1.00000 | |
| RegenerationR2 | 0.164 | 3.235 | 0.71569 | 0.96210 | |
| RegenerationR3 | 0.265 | 3.235 | 0.59627 | 0.90648 | |
| RegenerationR4 | -0.156 | 3.235 | 0.77877 | 0.97999 | |
| RegenerationR5 | 0.812 | 3.235 | 0.08881 | 0.45889 | |
| RegenerationR6 | 0.422 | 3.235 | 0.47030 | 0.78461 | |
| RegenerationBL | 1.018 | 3.235 | 0.10050 | 0.37276 | |
| RegenerationTP | -0.386 | 3.235 | 0.58466 | 0.95238 |
Genes with expression patterns similar to MligTC455_20414
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_20414 | 341 | 7.11 | Mlig455_001857 | Neo: - Age: - |
U2AF2 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_001857 {REF} {Length: 4922} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=110.2]; Occluded RNA-recognition motif [PF16842.7, score=24.1]; RNA recognition motif [PF16367.7, score=20.0]} {Human: ENSG00000063244, U2AF2, U2 small nuclear RNA auxiliary factor 2, [RH, Score=512, Expect=5e-179]} {Mouse: ENSMUSG00000030435, U2af2, U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2, [RH, Score=512, Expect=3e-179]} {Dmel: FBgn0005411, U2af50, U2 small nuclear riboprotein auxiliary factor 50, [RH, Score=560, Expect=0.0]} {Celegans: WBGene00006697, uaf-1, Splicing factor U2AF 65 kDa subunit, [RH, Score=449, Expect=2e-154]} {Smed: dd_Smed_v6_3590_0_1, dd_Smed_v6_3590_0_1, [RH, Score=558, Expect=0.0]} {RNA1509_25540, RNA1509_35646, RNA1509_3800, RNA1509_39764, RNA1509_45067} {RNA1310_13147.1, RNA1509_25540, RNA1509_35646, RNA1509_3800, RNA1509_39764, RNA1509_45067} {RNA1509_25540, RNA1509_35646, RNA1509_3800, RNA1509_39764, RNA1509_45067, RNA815_6631} |
| 2. | MligTC455_28552 | 131 | 2.72 | Mlig455_070154 | Neo: - Age: Up-Down-Down |
0.975 | - | - | - | - | - | 0.975 | Mlig455_070154 {REF} {Length: 5396} {TRANSSPLICED} {RNA1509_16314} {RNA1310_1850, RNA1509_16314} {RNA1509_16314, RNA815_2655.1} | |
| 3. | MligTC455_29590 | 8591 | 178.98 | Mlig455_034789 | Neo: Int S/G2/M Age: Down-Down-Up |
RPL34 | 0.969 | - | - | - | - | - | 0.969 | Mlig455_034789 {REF} {Length: 504} {TRANSSPLICED} {Pfam: Ribosomal protein L34e [PF01199.20, score=134.7]} {Human: ENSG00000109475, RPL34, ribosomal protein L34, [RH, Score=124, Expect=8e-38]} {Mouse: ENSMUSG00000062006, Rpl34, ribosomal protein L34, [RH, Score=125, Expect=4e-38]} {Dmel: FBgn0039406, RpL34a, Ribosomal protein L34a, [RH, Score=152, Expect=2e-48]} {Celegans: WBGene00004448, rpl-34, Ribosomal Protein, Large subunit, [RH, Score=118, Expect=7e-36]} {Smed: dd_Smed_v6_110_0_1, dd_Smed_v6_110_0_1, [RH, Score=151, Expect=4e-49]} {RNA1509_418, RNA1509_846} {RNA1310_70667, RNA1509_846} {RNA1509_846, RNA815_30525} |
| 4. | MligTC455_45054 | 939 | 19.56 | Mlig455_011950 | Neo: - Age: Down-Up-Down |
UBL3 | 0.966 | - | - | - | - | - | 0.966 | Mlig455_011950 {REF} {Length: 1816} {TRANSSPLICED} {Pfam: Ubiquitin-2 like Rad60 SUMO-like [PF13881.8, score=84.4]} {Human: ENSG00000122042, UBL3, ubiquitin like 3, [Score=127, Expect=1e-38]} {Mouse: ENSMUSG00000001687, Ubl3, ubiquitin-like 3, [Score=127, Expect=9e-39]} {Dmel: FBgn0026076, UBL3, Ubiquitin like 3, [Score=123, Expect=9e-35]} {Celegans: WBGene00008121, C46F11.6, Ubiquitin-like protein, [Score=108, Expect=9e-32]} {Smed: dd_Smed_v6_10574_0_1, dd_Smed_v6_10574_0_1, [Score=95.9, Expect=8e-27]} {RNA1509_23086, RNA1509_40501, RNA1509_50763} {RNA1310_50105.2, RNA1509_23086, RNA1509_40501, RNA1509_50763} {RNA1509_23086, RNA1509_40501, RNA1509_50763, RNA815_23727} |
Berezikov Lab - 2020-2021 © ERIBA