M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_29590

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_29590 8591 178.98 Mlig455_034789

Neo: Int S/G2/M

Age: Down-Down-Up

 RPL34 Mlig455_034789 {REF} {Length: 504} {TRANSSPLICED} {Pfam: Ribosomal protein L34e [PF01199.20, score=134.7]} {Human: ENSG00000109475, RPL34, ribosomal protein L34, [RH, Score=124, Expect=8e-38]} {Mouse: ENSMUSG00000062006, Rpl34, ribosomal protein L34, [RH, Score=125, Expect=4e-38]} {Dmel: FBgn0039406, RpL34a, Ribosomal protein L34a, [RH, Score=152, Expect=2e-48]} {Celegans: WBGene00004448, rpl-34, Ribosomal Protein, Large subunit, [RH, Score=118, Expect=7e-36]} {Smed: dd_Smed_v6_110_0_1, dd_Smed_v6_110_0_1, [RH, Score=151, Expect=4e-49]} {RNA1509_418, RNA1509_846} {RNA1310_70667, RNA1509_846} {RNA1509_846, RNA815_30525}

Cumulative graph for MligTC455_29590

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.06 7.642 0.39122 1.00000
RegionR2 0.31 7.642 0.76200 1.00000
RegionR3 0.474 7.642 0.59635 1.00000
RegionR4 -0.452 7.642 0.66053 0.96007
RegionR5 0.199 7.642 0.82080 1.00000
RegionR6 0.201 7.642 0.82347 1.00000
RegionR7 0.368 7.642 0.66751 1.00000
RegionR8 -0.039 7.642 0.96563 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.097 7.642 0.44467 1.00000
RegenerationR2 -1.364 7.642 0.27322 0.71858
RegenerationR3 -1.303 7.642 0.29337 0.72532
RegenerationR4 -0.821 7.642 0.52142 0.87970
RegenerationR5 -0.482 7.642 0.69424 0.94959
RegenerationR6 -1.091 7.642 0.38151 0.72234
RegenerationBL -1.241 7.642 0.26403 0.62257
RegenerationTP -0.543 7.642 0.63728 0.98195


Genes with expression patterns similar to MligTC455_29590

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_29590 8591 178.98 Mlig455_034789

Neo: Int S/G2/M

Age: Down-Down-Up

 RPL34 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_034789 {REF} {Length: 504} {TRANSSPLICED} {Pfam: Ribosomal protein L34e [PF01199.20, score=134.7]} {Human: ENSG00000109475, RPL34, ribosomal protein L34, [RH, Score=124, Expect=8e-38]} {Mouse: ENSMUSG00000062006, Rpl34, ribosomal protein L34, [RH, Score=125, Expect=4e-38]} {Dmel: FBgn0039406, RpL34a, Ribosomal protein L34a, [RH, Score=152, Expect=2e-48]} {Celegans: WBGene00004448, rpl-34, Ribosomal Protein, Large subunit, [RH, Score=118, Expect=7e-36]} {Smed: dd_Smed_v6_110_0_1, dd_Smed_v6_110_0_1, [RH, Score=151, Expect=4e-49]} {RNA1509_418, RNA1509_846} {RNA1310_70667, RNA1509_846} {RNA1509_846, RNA815_30525}
2. MligTC455_23616 3656 76.17 Mlig455_002619

Neo: Neoblast

Age: -

 EIF3E 1.655 - - 0.700 0.955 - - Mlig455_002619 {REF} {Length: 2641} {Pfam: eIF3 subunit 6 N terminal domain [PF09440.12, score=110.9]; PCI domain [PF01399.29, score=66.3]; Protein of unknown function (DUF3791) [PF12668.9, score=19.1]} {Human: ENSG00000104408, EIF3E, eukaryotic translation initiation factor 3 subunit E, [RH, Score=435, Expect=3e-150]} {Mouse: ENSMUSG00000022336, Eif3e, eukaryotic translation initiation factor 3, subunit E, [RH, Score=435, Expect=2e-150]} {Dmel: FBgn0025582, eIF3e, eukaryotic translation initiation factor 3 subunit e, [RH, Score=372, Expect=5e-126]} {Celegans: WBGene00001228, eif-3.E, Eukaryotic translation initiation factor 3 subunit E, [RH, Score=327, Expect=3e-108]} {Smed: dd_Smed_v6_1600_0_1, dd_Smed_v6_1600_0_1, [RH, Score=402, Expect=7e-138]} {RNA1509_1478, RNA1509_16636, RNA1509_3105} {RNA1310_11423, RNA1509_1478, RNA1509_16636, RNA1509_3105} {RNA1509_1478, RNA1509_16636, RNA1509_3105, RNA815_7794}
3. MligTC455_20414 341 7.11 Mlig455_001857

Neo: -

Age: -

 U2AF2 0.969 - - - - - 0.969 Mlig455_001857 {REF} {Length: 4922} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=110.2]; Occluded RNA-recognition motif [PF16842.7, score=24.1]; RNA recognition motif [PF16367.7, score=20.0]} {Human: ENSG00000063244, U2AF2, U2 small nuclear RNA auxiliary factor 2, [RH, Score=512, Expect=5e-179]} {Mouse: ENSMUSG00000030435, U2af2, U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2, [RH, Score=512, Expect=3e-179]} {Dmel: FBgn0005411, U2af50, U2 small nuclear riboprotein auxiliary factor 50, [RH, Score=560, Expect=0.0]} {Celegans: WBGene00006697, uaf-1, Splicing factor U2AF 65 kDa subunit, [RH, Score=449, Expect=2e-154]} {Smed: dd_Smed_v6_3590_0_1, dd_Smed_v6_3590_0_1, [RH, Score=558, Expect=0.0]} {RNA1509_25540, RNA1509_35646, RNA1509_3800, RNA1509_39764, RNA1509_45067} {RNA1310_13147.1, RNA1509_25540, RNA1509_35646, RNA1509_3800, RNA1509_39764, RNA1509_45067} {RNA1509_25540, RNA1509_35646, RNA1509_3800, RNA1509_39764, RNA1509_45067, RNA815_6631}
4. MligTC455_45054 939 19.56 Mlig455_011950

Neo: -

Age: Down-Up-Down

 UBL3 0.965 - - - - - 0.965 Mlig455_011950 {REF} {Length: 1816} {TRANSSPLICED} {Pfam: Ubiquitin-2 like Rad60 SUMO-like [PF13881.8, score=84.4]} {Human: ENSG00000122042, UBL3, ubiquitin like 3, [Score=127, Expect=1e-38]} {Mouse: ENSMUSG00000001687, Ubl3, ubiquitin-like 3, [Score=127, Expect=9e-39]} {Dmel: FBgn0026076, UBL3, Ubiquitin like 3, [Score=123, Expect=9e-35]} {Celegans: WBGene00008121, C46F11.6, Ubiquitin-like protein, [Score=108, Expect=9e-32]} {Smed: dd_Smed_v6_10574_0_1, dd_Smed_v6_10574_0_1, [Score=95.9, Expect=8e-27]} {RNA1509_23086, RNA1509_40501, RNA1509_50763} {RNA1310_50105.2, RNA1509_23086, RNA1509_40501, RNA1509_50763} {RNA1509_23086, RNA1509_40501, RNA1509_50763, RNA815_23727}
5. MligTC455_25902 1500 31.24 Mlig455_009504, Mlig455_009544, Mlig455_052770, Mlig455_054087, Mlig455_059396, Mlig455_061235, Mlig455_061748, Mlig455_064501

Neo: -

Age: logFC(26M/2M)=7.524

Regeneration-upregulated BL: 2.245

Regeneration-enriched BL: 2.245

 0.962 - - - - - 0.962

Mlig455_009504 {REF} {Length: 4614} {TRANSSPLICED} {RNA1509_3577} {RNA1310_173.2} {RNA815_485.1}

Mlig455_009544 {REF} {Length: 4612} {TRANSSPLICED} {RNA1509_3577} {RNA1310_173.2} {RNA815_485.1}

Mlig455_052770 {REF} {Length: 5275} {TRANSSPLICED} {RNA1509_3577} {RNA1310_173.2} {RNA815_485.1}

Mlig455_054087 {REF} {Length: 4537} {TRANSSPLICED} {RNA1509_3577} {RNA1310_173.2} {RNA815_485.1}

Mlig455_059396 {REF} {Length: 4612} {TRANSSPLICED} {RNA1509_3577} {RNA1310_173.2} {RNA815_485.1}

Mlig455_061235 {REF} {Length: 4612} {TRANSSPLICED} {RNA1509_3577} {RNA1310_173.2} {RNA815_485.1}

Mlig455_061748 {REF} {Length: 4612} {TRANSSPLICED} {RNA1509_3577} {RNA1310_173.2} {RNA815_485.1}

Mlig455_064501 {REF} {Length: 5178} {TRANSSPLICED} {RNA1509_3577} {RNA1310_173.2} {RNA815_485.1}
6. MligTC455_30761 3551 73.99 Mlig455_039585, Mlig455_069818

Neo: -

Age: Up-Up-Down

 0.962 - - - 0.962 - -

Mlig455_039585 {REF} {Length: 5014} {Pfam: Ammonium Transporter Family [PF00909.23, score=121.3]} {Dmel: FBgn0038309, Amt, Ammonium transporter, [Score=160, Expect=3e-47]} {Celegans: WBGene00000135, amt-3, Putative ammonium transporter 3, [Score=136, Expect=4e-38]} {RNA1509_11254, RNA1509_1200} {RNA1310_29002, RNA1509_11254} {RNA1509_11254, RNA815_7853.1}

Mlig455_069818 {REF} {Length: 1115} {TRANSSPLICED} {RNA1509_1693} {RNA1310_29002} {RNA815_7853.1}
7. MligTC455_25903 200 4.17 Mlig455_069664

Neo: -

Age: -

 0.961 - - - - - 0.961 Mlig455_069664 {REF} {Length: 6185} {TRANSSPLICED} {RNA1509_3577} {RNA1310_173.2, RNA1509_3577} {RNA1509_3577, RNA815_485.1}
8. MligTC455_22274 2011 41.9 Mlig455_038507

Neo: -

Age: logFC(26M/2M)=0.411

Region-enriched R5: 1.184/0.00316

 PKM 0.958 - - - 0.958 - - Mlig455_038507 {REF} {Length: 2462} {TRANSSPLICED} {Pfam: Pyruvate kinase, barrel domain [PF00224.23, score=532.2]; Pyruvate kinase, alpha/beta domain [PF02887.18, score=107.6]; HpcH/HpaI aldolase/citrate lyase family [PF03328.16, score=22.4]} {Human: ENSG00000067225, PKM, pyruvate kinase M1/2, [RH, Score=702, Expect=0.0]; ENSG00000143627, PKLR, pyruvate kinase L/R, [RH, Score=670, Expect=0.0]; ENSG00000262785, PKLR, pyruvate kinase L/R, [RH, Score=670, Expect=0.0]} {Mouse: ENSMUSG00000032294, Pkm, pyruvate kinase, muscle, [RH, Score=700, Expect=0.0]} {Dmel: FBgn0267385, PyK, Pyruvate kinase, [RH, Score=661, Expect=0.0]} {Celegans: WBGene00009126, pyk-1, Pyruvate kinase, [RH, Score=641, Expect=0.0]} {Smed: dd_Smed_v6_605_0_1, dd_Smed_v6_605_0_1, [RH, Score=770, Expect=0.0]} {RNA1509_13634, RNA1509_1681, RNA1509_32740} {RNA1310_7731.1, RNA1509_13634, RNA1509_1681, RNA1509_32740} {RNA1509_13634, RNA1509_1681, RNA1509_32740, RNA815_3516.1}
9. MligTC455_24281 5598 116.62 Mlig455_047933

Neo: Int S/G2/M

Age: Down-Up-Up

 0.957 - - - 0.957 - - Mlig455_047933 {REF} {Length: 906} {TRANSSPLICED} {Pfam: Protein of unknown function (DUF2462) [PF09495.12, score=26.5]} {RNA1509_2501, RNA1509_3256, RNA1509_5591} {RNA1310_82168, RNA1509_2501, RNA1509_3256, RNA1509_5591} {RNA1509_2501, RNA1509_3256, RNA1509_5591, RNA815_44170}
10. MligTC455_18163 509 10.61 Mlig455_056240

Neo: -

Age: Down-Up-Down

Region-enriched R4: 4.137/0.00055

 CCDC124 0.956 - - - - - 0.956 Mlig455_056240 {REF} {Length: 922} {TRANSSPLICED} {Pfam: Coiled-coil domain-containing protein 124 /Oxs1 [PF06244.14, score=115.7]} {Human: ENSG00000007080, CCDC124, coiled-coil domain containing 124, [RH, Score=141, Expect=1e-41]} {Mouse: ENSMUSG00000007721, Ccdc124, coiled-coil domain containing 124, [RH, Score=142, Expect=8e-42]} {Dmel: FBgn0038675, CG6013, [RH, Score=142, Expect=2e-42]} {Celegans: WBGene00022268, Y73E7A.1, [RH, Score=142, Expect=5e-42]} {Smed: dd_Smed_v6_3709_0_1, dd_Smed_v6_3709_0_1, [RH, Score=168, Expect=1e-52]} {RNA1509_2332, RNA1509_47066} {RNA1310_39247, RNA1509_47066} {RNA1509_47066, RNA815_19818}
11. MligTC455_30760 5612 116.91 Mlig455_006073, Mlig455_011942, Mlig455_052693

Neo: -

Age: logFC(26M/2M)=1.042

 0.956 - - - 0.956 - -

Mlig455_006073 {REF} {Length: 1112} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_1693} {RNA1310_29002} {RNA815_7853.1}

Mlig455_011942 {REF} {Length: 1109} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_1200, RNA1509_21131} {RNA1310_29002, RNA1509_21131} {RNA1509_21131, RNA815_7853.1}

Mlig455_052693 {REF} {Length: 1111} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_1200} {RNA1310_29002} {RNA815_7853.1}
12. MligTC455_08747 49507 1031.39 Mlig455_053993, Mlig455_054076

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.298

Region-enriched R8: 1.460/0.00003
Region-enriched R7: 1.281/0.00022

 0.955 - - - - 0.955 -

Mlig455_053993 {REF} {Length: 945} {Pfam: PLAC8 family [PF04749.19, score=75.9]} {Smed: dd_Smed_v6_477_0_1, dd_Smed_v6_477_0_1, [Score=109, Expect=1e-32]} {RNA1509_810} {RNA1310_43428.1} {RNA815_20835}

Mlig455_054076 {REF} {Length: 2056} {RNA1509_810} {RNA1310_43428.1} {RNA815_20835}
13. MligTC455_30758 1926 40.12 Mlig455_000739

Neo: -

Age: -

 0.955 - - - 0.955 - - Mlig455_000739 {REF} {Length: 672} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_1200} {RNA1310_29002} {RNA815_14771.2}
14. MligTC455_30762 5596 116.58 Mlig455_058999, Mlig455_068841, Mlig455_070941

Neo: -

Age: logFC(26M/2M)=0.399

 0.955 - - - 0.955 - -

Mlig455_058999 {REF} {Length: 1070} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_1693} {RNA1310_29002} {RNA815_7853.1}

Mlig455_068841 {REF} {Length: 1111} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_1693} {RNA1310_29002} {RNA815_7853.1}

Mlig455_070941 {REF} {Length: 1067} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_1693} {RNA1310_29002} {RNA815_7853.1}
15. MligTC455_30876 315 6.55 Mlig455_059528

Neo: -

Age: -

 0.954 - - - - - 0.954 Mlig455_059528 {REF} {Length: 649} {TRANSSPLICED} {RNA1509_13351, RNA1509_28600, RNA1509_31832} {RNA1310_56244, RNA1509_28600, RNA1509_31832} {RNA1509_28600, RNA1509_31832, RNA815_28747.1}
16. MligTC455_35088 46 0.95 Mlig455_017897

Neo: Int S/G2/M

Age: -

Regeneration-enriched R3: 7.732
Regeneration-enriched R4: 7.351
Regeneration-enriched R5: 7.046

 0.954 - - - - - 0.954 Mlig455_017897 {REF} {Length: 1909} {TRANSSPLICED} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=38.0]; C2H2-type zinc finger [PF13894.8, score=33.7]} {RNA1509_40803} {RNA1310_18926} {RNA815_10511.1}
17. MligTC455_30759 3803 79.23 Mlig455_007018, Mlig455_019153

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=5.943

 0.952 - - - 0.952 - -

Mlig455_007018 {REF} {Length: 1111} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_1200} {RNA1310_29002} {RNA815_7853.1}

Mlig455_019153 {REF} {Length: 1071} {TRANSSPLICED} {RNA1509_1693} {RNA1310_29002} {RNA815_7853.1}
18. MligTC455_25418 240 4.99 Mlig455_021896

Neo: -

Age: -

 CRNKL1 0.951 - - - - - 0.951 Mlig455_021896 {REF} {Length: 2980} {TRANSSPLICED} {Pfam: HAT (Half-A-TPR) repeat [PF02184.18, score=129.1]; Tetratricopeptide repeat [PF13428.8, score=75.2]; Suppressor of forked protein (Suf) [PF05843.16, score=51.9]; Tetratricopeptide repeat [PF14559.8, score=49.8]; Tetratricopeptide repeat [PF13432.8, score=36.4]; Mad3/BUB1 homology region 1 [PF08311.14, score=34.3]; Tetratricopeptide repeat [PF07719.19, score=31.8]; Tetratricopeptide repeat [PF13371.8, score=27.9]; Tetratricopeptide repeat [PF13431.8, score=26.4]; NRDE-2, necessary for RNA interference [PF08424.12, score=23.8]} {Human: ENSG00000101343, CRNKL1, crooked neck pre-mRNA splicing factor 1, [RH, Score=875, Expect=0.0]} {Mouse: ENSMUSG00000001767, Crnkl1, crooked neck pre-mRNA splicing factor 1, [RH, Score=876, Expect=0.0]} {Dmel: FBgn0000377, crn, crooked neck, [RH, Score=813, Expect=0.0]} {Celegans: WBGene00019762, M03F8.3, [RH, Score=768, Expect=0.0]} {Smed: dd_Smed_v6_4749_0_1, dd_Smed_v6_4749_0_1, [RH, Score=633, Expect=0.0]} {RNA1509_8200} {RNA1310_9194, RNA1509_8200} {RNA1509_8200, RNA815_2997}
19. MligTC455_35280 12795 266.56 Mlig455_044150

Neo: Neoblast

Age: -

 RPL38 0.951 - - - 0.951 - - Mlig455_044150 {REF} {Length: 373} {TRANSSPLICED} {Pfam: Ribosomal L38e protein family [PF01781.20, score=118.0]} {Human: ENSG00000172809, RPL38, ribosomal protein L38, [RH, Score=125, Expect=4e-39]} {Mouse: ENSMUSG00000057322, Rpl38, ribosomal protein L38, [RH, Score=123, Expect=1e-38]} {Dmel: FBgn0040007, RpL38, Ribosomal protein L38, [RH, Score=110, Expect=8e-34]} {Celegans: WBGene00004452, rpl-38, 60S ribosomal protein L38, [RH, Score=113, Expect=4e-35]} {Smed: dd_Smed_v6_236_0_1, dd_Smed_v6_236_0_1, [RH, Score=118, Expect=6e-37]} {RNA1310_94078} {RNA815_48147}
20. MligTC455_50908 139 2.9 Mlig455_052218

Neo: -

Age: logFC(26M/2M)=-0.399

 0.951 - - - - - 0.951 Mlig455_052218 {REF} {Length: 3196} {TRANSSPLICED} {RNA1509_28633, RNA1509_55949} {RNA1310_25562, RNA1509_28633, RNA1509_55949} {RNA1509_28633, RNA1509_55949, RNA815_13856}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA