TomoSeq data search

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Results for MligTC455_21301

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_21301

2418

50.37

Mlig455_055218, Mlig455_055312

Neo: -

Age: -

Regeneration-enriched BL: 2.253
Regeneration-enriched R6: 1.725

HNRNPR, SYNCRIP

Mlig455_055218 {REF} {Length: 3254} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=142.8]; Heterogeneous nuclear ribonucleoprotein Q acidic domain [PF18360.3, score=39.7]; Occluded RNA-recognition motif [PF16842.7, score=23.6]; RNA recognition motif [PF16367.7, score=22.7]} {Human: ENSG00000135316, SYNCRIP, synaptotagmin binding cytoplasmic RNA interacting protein, [RH, Score=373, Expect=7e-120]; ENSG00000282958, HNRNPR, heterogeneous nuclear ribonucleoprotein R, [RH, Score=357, Expect=1e-112]; ENSG00000125944, HNRNPR, heterogeneous nuclear ribonucleoprotein R, [RH, Score=357, Expect=1e-112]} {Mouse: ENSMUSG00000032423, Syncrip, synaptotagmin binding, cytoplasmic RNA interacting protein, [RH, Score=372, Expect=1e-119]; ENSMUSG00000066037, Hnrnpr, heterogeneous nuclear ribonucleoprotein R, [RH, Score=358, Expect=4e-113]} {Dmel: FBgn0038826, Syp, Syncrip, [RH, Score=404, Expect=4e-130]} {Celegans: WBGene00002000, hrp-2, HnRNP A1 homolog, [RH, Score=315, Expect=3e-97]} {Smed: dd_Smed_v6_2228_0_1, dd_Smed_v6_2228_0_1, [Score=258, Expect=1e-75]} {RNA1509_41895, RNA1509_4811} {RNA1310_12864, RNA1509_4811} {RNA1509_4811, RNA815_4749.1}

Mlig455_055312 {REF} {Length: 3347} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=144.4]; Heterogeneous nuclear ribonucleoprotein Q acidic domain [PF18360.3, score=39.7]; Occluded RNA-recognition motif [PF16842.7, score=23.5]; RNA recognition motif [PF16367.7, score=21.9]} {Human: ENSG00000282958, HNRNPR, heterogeneous nuclear ribonucleoprotein R, [RH, Score=355, Expect=6e-112]; ENSG00000125944, HNRNPR, heterogeneous nuclear ribonucleoprotein R, [RH, Score=355, Expect=6e-112]} {Mouse: ENSMUSG00000066037, Hnrnpr, heterogeneous nuclear ribonucleoprotein R, [RH, Score=356, Expect=2e-112]} {Dmel: FBgn0038826, Syp, Syncrip, [RH, Score=405, Expect=2e-130]} {Celegans: WBGene00002000, hrp-2, HnRNP A1 homolog, [RH, Score=315, Expect=2e-97]} {Smed: dd_Smed_v6_2228_0_1, dd_Smed_v6_2228_0_1, [Score=256, Expect=8e-75]} {RNA1509_41895} {RNA1310_12864} {RNA815_4749.1}

Cumulative graph for MligTC455_21301

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.035	5.721	0.96075	1.00000
RegionR2	0.391	5.721	0.27160	0.65618
RegionR3	0.038	5.721	0.89497	1.00000
RegionR4	0.269	5.721	0.42659	0.75465
RegionR5	0.159	5.721	0.55714	0.91741
RegionR6	-0.143	5.721	0.63773	1.00000
RegionR7	-0.603	5.721	0.13498	0.69050
RegionR8	-0.146	5.721	0.75105	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	1.023	5.721	0.21069	0.95045
RegenerationR2	0.143	5.721	0.64989	0.93645
RegenerationR3	0.898	5.721	0.01035	0.18640
RegenerationR4	0.749	5.721	0.03401	0.29764
RegenerationR5	1.159	5.721	0.00045	0.03452
RegenerationR6	1.725	5.721	0.00000	0.00032
RegenerationBL	2.253	5.721	0.00000	0.00000
RegenerationTP	0.795	5.721	0.05719	0.38882

Genes with expression patterns similar to MligTC455_21301

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_21301	2418	50.37	Mlig455_055218, Mlig455_055312	Neo: - Age: - Regeneration-enriched BL: 2.253 Regeneration-enriched R6: 1.725	HNRNPR, SYNCRIP	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_055218 {REF} {Length: 3254} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=142.8]; Heterogeneous nuclear ribonucleoprotein Q acidic domain [PF18360.3, score=39.7]; Occluded RNA-recognition motif [PF16842.7, score=23.6]; RNA recognition motif [PF16367.7, score=22.7]} {Human: ENSG00000135316, SYNCRIP, synaptotagmin binding cytoplasmic RNA interacting protein, [RH, Score=373, Expect=7e-120]; ENSG00000282958, HNRNPR, heterogeneous nuclear ribonucleoprotein R, [RH, Score=357, Expect=1e-112]; ENSG00000125944, HNRNPR, heterogeneous nuclear ribonucleoprotein R, [RH, Score=357, Expect=1e-112]} {Mouse: ENSMUSG00000032423, Syncrip, synaptotagmin binding, cytoplasmic RNA interacting protein, [RH, Score=372, Expect=1e-119]; ENSMUSG00000066037, Hnrnpr, heterogeneous nuclear ribonucleoprotein R, [RH, Score=358, Expect=4e-113]} {Dmel: FBgn0038826, Syp, Syncrip, [RH, Score=404, Expect=4e-130]} {Celegans: WBGene00002000, hrp-2, HnRNP A1 homolog, [RH, Score=315, Expect=3e-97]} {Smed: dd_Smed_v6_2228_0_1, dd_Smed_v6_2228_0_1, [Score=258, Expect=1e-75]} {RNA1509_41895, RNA1509_4811} {RNA1310_12864, RNA1509_4811} {RNA1509_4811, RNA815_4749.1} Mlig455_055312 {REF} {Length: 3347} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=144.4]; Heterogeneous nuclear ribonucleoprotein Q acidic domain [PF18360.3, score=39.7]; Occluded RNA-recognition motif [PF16842.7, score=23.5]; RNA recognition motif [PF16367.7, score=21.9]} {Human: ENSG00000282958, HNRNPR, heterogeneous nuclear ribonucleoprotein R, [RH, Score=355, Expect=6e-112]; ENSG00000125944, HNRNPR, heterogeneous nuclear ribonucleoprotein R, [RH, Score=355, Expect=6e-112]} {Mouse: ENSMUSG00000066037, Hnrnpr, heterogeneous nuclear ribonucleoprotein R, [RH, Score=356, Expect=2e-112]} {Dmel: FBgn0038826, Syp, Syncrip, [RH, Score=405, Expect=2e-130]} {Celegans: WBGene00002000, hrp-2, HnRNP A1 homolog, [RH, Score=315, Expect=2e-97]} {Smed: dd_Smed_v6_2228_0_1, dd_Smed_v6_2228_0_1, [Score=256, Expect=8e-75]} {RNA1509_41895} {RNA1310_12864} {RNA815_4749.1}
2.	MligTC455_29301	2735	56.98	Mlig455_063822	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.465 Region-enriched R6: 1.256/0.00010 Region-enriched R8: 1.155/0.01232	MYH6	1.724	-	-	-	0.960	0.764	-	Mlig455_063822 {REF} {Length: 7719} {Pfam: Myosin head (motor domain) [PF00063.23, score=936.9]; Myosin tail [PF01576.21, score=585.4]; Myosin N-terminal SH3-like domain [PF02736.21, score=57.4]; Protein of unknown function (DUF1664) [PF07889.14, score=37.7]; Crescentin protein [PF19220.2, score=25.9]} {Human: ENSG00000197616, MYH6, myosin heavy chain 6, [RH, Score=2081, Expect=0.0]; ENSG00000092054, MYH7, myosin heavy chain 7, [RH, Score=2075, Expect=0.0]; ENSG00000125414, MYH2, myosin heavy chain 2, [RH, Score=2039, Expect=0.0]; ENSG00000109061, MYH1, myosin heavy chain 1, [RH, Score=2038, Expect=0.0]; ENSG00000133020, MYH8, myosin heavy chain 8, [RH, Score=2032, Expect=0.0]; ENSG00000264424, MYH4, myosin heavy chain 4, [RH, Score=2018, Expect=0.0]; ENSG00000109063, MYH3, myosin heavy chain 3, [RH, Score=2003, Expect=0.0]} {Mouse: ENSMUSG00000040752, Myh6, myosin, heavy polypeptide 6, cardiac muscle, alpha, [RH, Score=2081, Expect=0.0]; ENSMUSG00000053093, Myh7, myosin, heavy polypeptide 7, cardiac muscle, beta, [RH, Score=2069, Expect=0.0]; ENSMUSG00000057003, Myh4, myosin, heavy polypeptide 4, skeletal muscle, [RH, Score=2063, Expect=0.0]; ENSMUSG00000055775, Myh8, myosin, heavy polypeptide 8, skeletal muscle, perinatal, [RH, Score=2039, Expect=0.0]; ENSMUSG00000056328, Myh1, myosin, heavy polypeptide 1, skeletal muscle, adult, [RH, Score=2038, Expect=0.0]; ENSMUSG00000033196, Myh2, myosin, heavy polypeptide 2, skeletal muscle, adult, [RH, Score=2034, Expect=0.0]; ENSMUSG00000020908, Myh3, myosin, heavy polypeptide 3, skeletal muscle, embryonic, [RH, Score=2010, Expect=0.0]; ENSMUSG00000060180, Myh13, myosin, heavy polypeptide 13, skeletal muscle, [RH, Score=1981, Expect=0.0]} {Dmel: FBgn0264695, Mhc, Myosin heavy chain, [RH, Score=2087, Expect=0.0]} {Celegans: WBGene00019064, myo-5, MYOsin heavy chain structural genes, [RH, Score=1993, Expect=0.0]} {Smed: dd_Smed_v6_579_0_1, dd_Smed_v6_579_0_1, [RH, Score=2721, Expect=0.0]} {RNA1509_1454, RNA1509_7295} {RNA1310_412.1, RNA1509_1454, RNA1509_7295} {RNA1509_1454, RNA1509_7295, RNA815_129.1}
3.	MligTC455_29302	2799	58.31	Mlig455_069986	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.773 Region-enriched R6: 1.296/0.00011 Region-enriched R8: 1.060/0.04043	MYH2	1.712	-	-	-	0.952	0.760	-	Mlig455_069986 {REF} {Length: 7490} {Pfam: Myosin tail [PF01576.21, score=487.0]; Protein of unknown function (DUF1664) [PF07889.14, score=47.5]; Crescentin protein [PF19220.2, score=24.1]; Autophagy protein 16 (ATG16) [PF08614.13, score=22.0]; Intermediate filament protein [PF00038.23, score=20.2]} {Human: ENSG00000125414, MYH2, myosin heavy chain 2, [Score=802, Expect=0.0]; ENSG00000109061, MYH1, myosin heavy chain 1, [Score=799, Expect=0.0]; ENSG00000133020, MYH8, myosin heavy chain 8, [Score=798, Expect=0.0]; ENSG00000197616, MYH6, myosin heavy chain 6, [Score=796, Expect=0.0]; ENSG00000092054, MYH7, myosin heavy chain 7, [Score=793, Expect=0.0]; ENSG00000264424, MYH4, myosin heavy chain 4, [Score=793, Expect=0.0]} {Mouse: ENSMUSG00000057003, Myh4, myosin, heavy polypeptide 4, skeletal muscle, [Score=803, Expect=0.0]; ENSMUSG00000033196, Myh2, myosin, heavy polypeptide 2, skeletal muscle, adult, [Score=793, Expect=0.0]; ENSMUSG00000056328, Myh1, myosin, heavy polypeptide 1, skeletal muscle, adult, [Score=793, Expect=0.0]; ENSMUSG00000053093, Myh7, myosin, heavy polypeptide 7, cardiac muscle, beta, [Score=790, Expect=0.0]; ENSMUSG00000055775, Myh8, myosin, heavy polypeptide 8, skeletal muscle, perinatal, [Score=787, Expect=0.0]; ENSMUSG00000040752, Myh6, myosin, heavy polypeptide 6, cardiac muscle, alpha, [Score=786, Expect=0.0]} {Dmel: FBgn0264695, Mhc, Myosin heavy chain, [Score=873, Expect=0.0]} {Celegans: WBGene00006789, unc-54, Myosin-4, [Score=793, Expect=0.0]} {Smed: dd_Smed_v6_579_0_2, dd_Smed_v6_579_0_2, [Score=1014, Expect=0.0]} {RNA1509_1454} {RNA1310_412.1} {RNA815_129.1}
4.	MligTC455_30336	3591	74.81	Mlig455_009403, Mlig455_036921	Neo: Int S/G2/M Age: -		1.705	0.755	-	-	0.950	-	-	Mlig455_009403 {REF} {Length: 1869} {TRANSSPLICED} {Pfam: C-terminal duplication domain of Friend of PRMT1 [PF13865.8, score=27.5]} {RNA1509_16417, RNA1509_20669} {RNA1310_14143, RNA1509_16417, RNA1509_20669} {RNA1509_16417, RNA1509_20669, RNA815_6550.1} Mlig455_036921 {REF} {Length: 2321} {TRANSSPLICED} {Pfam: C-terminal duplication domain of Friend of PRMT1 [PF13865.8, score=28.4]} {RNA1509_15581, RNA1509_16417, RNA1509_29379, RNA1509_33502, RNA1509_50154} {RNA1310_14143, RNA1509_15581, RNA1509_29379, RNA1509_33502, RNA1509_50154} {RNA1509_15581, RNA1509_29379, RNA1509_33502, RNA1509_50154, RNA815_6550.1}
5.	MligTC455_53876	497	10.36	Mlig455_029017	Neo: Int S/G2/M Age: - Region-enriched R4: 2.406/0.00104 Region-enriched R5: 2.185/0.00022	DTYMK	0.975	-	-	-	0.975	-	-	Mlig455_029017 {REF} {Length: 1458} {TRANSSPLICED} {Pfam: Thymidylate kinase [PF02223.19, score=136.6]; Polyphosphate kinase 2 (PPK2) [PF03976.16, score=19.7]} {Human: ENSG00000168393, DTYMK, deoxythymidylate kinase, [RH, Score=193, Expect=1e-61]} {Mouse: ENSMUSG00000026281, Dtymk, deoxythymidylate kinase, [RH, Score=184, Expect=3e-58]} {Dmel: FBgn0034299, CG5757, [RH, Score=158, Expect=3e-48]} {Celegans: WBGene00011272, dtmk-1, Thymidylate kinase, [RH, Score=177, Expect=5e-56]} {Smed: dd_Smed_v6_3849_0_2, dd_Smed_v6_3849_0_2, [RH, Score=162, Expect=3e-50]} {RNA1509_24600} {RNA1310_40248, RNA1509_24600} {RNA1509_24600, RNA815_19284}
6.	MligTC455_17222	3351	69.82	Mlig455_014000	Neo: - Age: -	MLEC	0.954	-	-	-	-	-	0.954	Mlig455_014000 {REF} {Length: 1634} {Pfam: Malectin domain [PF11721.10, score=42.4]} {Human: ENSG00000110917, MLEC, malectin, [Score=112, Expect=3e-30]} {Mouse: ENSMUSG00000048578, Mlec, malectin, [Score=112, Expect=4e-30]} {Dmel: FBgn0032916, CG9257, [Score=123, Expect=5e-34]} {Celegans: WBGene00018423, F44E2.10, [Score=67.0, Expect=2e-13]} {Smed: dd_Smed_v6_1880_0_1, dd_Smed_v6_1880_0_1, [Score=168, Expect=5e-52]} {RNA1509_9667} {RNA1310_12277.1} {RNA815_4603.1}
7.	MligTC455_32763	1061	22.11	Mlig455_045076	Neo: - Age: Up-Down-Down	PRPF8	0.954	-	-	-	-	-	0.954	Mlig455_045076 {REF} {Length: 8657} {TRANSSPLICED} {Pfam: PROCN (NUC071) domain [PF08083.13, score=774.2]; PRP8 domain IV core [PF12134.10, score=422.5]; U6-snRNA interacting domain of PrP8 [PF10596.11, score=295.5]; PRO8NT (NUC069), PrP8 N-terminal domain [PF08082.13, score=280.6]; U5-snRNA binding site 2 of PrP8 [PF10597.11, score=241.2]; PROCT (NUC072) domain [PF08084.13, score=166.4]; RNA recognition motif of the spliceosomal PrP8 [PF10598.11, score=148.4]; JAB1/Mov34/MPN/PAD-1 ubiquitin protease [PF01398.23, score=18.8]} {Human: ENSG00000274442, PRPF8, pre-mRNA processing factor 8, [RH, Score=4199, Expect=0.0]; ENSG00000174231, PRPF8, pre-mRNA processing factor 8, [RH, Score=4199, Expect=0.0]} {Mouse: ENSMUSG00000020850, Prpf8, pre-mRNA processing factor 8, [RH, Score=4199, Expect=0.0]} {Dmel: FBgn0033688, Prp8, pre-mRNA processing factor 8, [RH, Score=4139, Expect=0.0]} {Celegans: WBGene00004187, prp-8, Pre-mRNA-splicing factor 8 homolog, [RH, Score=4034, Expect=0.0]} {Smed: dd_Smed_v6_2504_0_1, dd_Smed_v6_2504_0_1, [RH, Score=3820, Expect=0.0]} {RNA1509_1095, RNA1509_14304, RNA1509_39662} {RNA1310_216, RNA1509_1095, RNA1509_14304, RNA1509_39662} {RNA1509_1095, RNA1509_14304, RNA1509_39662, RNA815_117.1}
8.	MligTC455_41862	786	16.38	Mlig455_002905	Neo: Int S/G2/M Age: - Region-enriched R5: 1.120/0.00029	ATRX	0.952	-	-	-	0.952	-	-	Mlig455_002905 {REF} {Length: 3742} {TRANSSPLICED} {Pfam: Cysteine Rich ADD domain [PF17981.3, score=49.4]} {Human: ENSG00000085224, ATRX, ATRX, chromatin remodeler, [Score=134, Expect=8e-32]} {Mouse: ENSMUSG00000031229, Atrx, ATRX, chromatin remodeler, [Score=137, Expect=1e-32]} {Dmel: FBgn0026573, ADD1, ADD domain-containing protein 1, [RH, Score=107, Expect=1e-23]} {Smed: dd_Smed_v6_6332_0_1, dd_Smed_v6_6332_0_1, [RH, Score=137, Expect=5e-34]} {RNA1509_23710, RNA1509_40627, RNA1509_41487, RNA1509_51493, RNA1509_56296, RNA1509_6503} {RNA1310_2401, RNA1509_23710, RNA1509_40627, RNA1509_41487, RNA1509_51493, RNA1509_56296, RNA1509_6503} {RNA1509_23710, RNA1509_40627, RNA1509_41487, RNA1509_51493, RNA1509_56296, RNA1509_6503, RNA815_2767.1}

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