Data search
Results for MligTC455_32763
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_32763 | 1061 | 22.11 | Mlig455_045076 | Neo: - Age: Up-Down-Down |
PRPF8 | Mlig455_045076 {REF} {Length: 8657} {TRANSSPLICED} {Pfam: PROCN (NUC071) domain [PF08083.13, score=774.2]; PRP8 domain IV core [PF12134.10, score=422.5]; U6-snRNA interacting domain of PrP8 [PF10596.11, score=295.5]; PRO8NT (NUC069), PrP8 N-terminal domain [PF08082.13, score=280.6]; U5-snRNA binding site 2 of PrP8 [PF10597.11, score=241.2]; PROCT (NUC072) domain [PF08084.13, score=166.4]; RNA recognition motif of the spliceosomal PrP8 [PF10598.11, score=148.4]; JAB1/Mov34/MPN/PAD-1 ubiquitin protease [PF01398.23, score=18.8]} {Human: ENSG00000274442, PRPF8, pre-mRNA processing factor 8, [RH, Score=4199, Expect=0.0]; ENSG00000174231, PRPF8, pre-mRNA processing factor 8, [RH, Score=4199, Expect=0.0]} {Mouse: ENSMUSG00000020850, Prpf8, pre-mRNA processing factor 8, [RH, Score=4199, Expect=0.0]} {Dmel: FBgn0033688, Prp8, pre-mRNA processing factor 8, [RH, Score=4139, Expect=0.0]} {Celegans: WBGene00004187, prp-8, Pre-mRNA-splicing factor 8 homolog, [RH, Score=4034, Expect=0.0]} {Smed: dd_Smed_v6_2504_0_1, dd_Smed_v6_2504_0_1, [RH, Score=3820, Expect=0.0]} {RNA1509_1095, RNA1509_14304, RNA1509_39662} {RNA1310_216, RNA1509_1095, RNA1509_14304, RNA1509_39662} {RNA1509_1095, RNA1509_14304, RNA1509_39662, RNA815_117.1} |
Cumulative graph for MligTC455_32763
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -0.304 | 4.686 | 0.75443 | 1.00000 | |
| RegionR2 | 0.279 | 4.686 | 0.52350 | 0.89673 | |
| RegionR3 | -0.246 | 4.686 | 0.50980 | 0.99846 | |
| RegionR4 | 0.228 | 4.686 | 0.58565 | 0.90126 | |
| RegionR5 | 0.175 | 4.686 | 0.58745 | 0.94581 | |
| RegionR6 | -0.267 | 4.686 | 0.46543 | 1.00000 | |
| RegionR7 | -0.043 | 4.686 | 0.92533 | 1.00000 | |
| RegionR8 | 0.179 | 4.686 | 0.73759 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -1 | 4.686 | 0.54859 | 1.00000 | |
| RegenerationR2 | 0.091 | 4.686 | 0.81338 | 0.99389 | |
| RegenerationR3 | 0.564 | 4.686 | 0.18302 | 0.61892 | |
| RegenerationR4 | 0.229 | 4.686 | 0.58849 | 0.90826 | |
| RegenerationR5 | 0.104 | 4.686 | 0.78680 | 0.98373 | |
| RegenerationR6 | 0.995 | 4.686 | 0.01840 | 0.16736 | |
| RegenerationBL | 1.096 | 4.686 | 0.01129 | 0.10821 | |
| RegenerationTP | 0.191 | 4.686 | 0.70624 | 1.00000 |
Genes with expression patterns similar to MligTC455_32763
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_32763 | 1061 | 22.11 | Mlig455_045076 | Neo: - Age: Up-Down-Down |
PRPF8 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_045076 {REF} {Length: 8657} {TRANSSPLICED} {Pfam: PROCN (NUC071) domain [PF08083.13, score=774.2]; PRP8 domain IV core [PF12134.10, score=422.5]; U6-snRNA interacting domain of PrP8 [PF10596.11, score=295.5]; PRO8NT (NUC069), PrP8 N-terminal domain [PF08082.13, score=280.6]; U5-snRNA binding site 2 of PrP8 [PF10597.11, score=241.2]; PROCT (NUC072) domain [PF08084.13, score=166.4]; RNA recognition motif of the spliceosomal PrP8 [PF10598.11, score=148.4]; JAB1/Mov34/MPN/PAD-1 ubiquitin protease [PF01398.23, score=18.8]} {Human: ENSG00000274442, PRPF8, pre-mRNA processing factor 8, [RH, Score=4199, Expect=0.0]; ENSG00000174231, PRPF8, pre-mRNA processing factor 8, [RH, Score=4199, Expect=0.0]} {Mouse: ENSMUSG00000020850, Prpf8, pre-mRNA processing factor 8, [RH, Score=4199, Expect=0.0]} {Dmel: FBgn0033688, Prp8, pre-mRNA processing factor 8, [RH, Score=4139, Expect=0.0]} {Celegans: WBGene00004187, prp-8, Pre-mRNA-splicing factor 8 homolog, [RH, Score=4034, Expect=0.0]} {Smed: dd_Smed_v6_2504_0_1, dd_Smed_v6_2504_0_1, [RH, Score=3820, Expect=0.0]} {RNA1509_1095, RNA1509_14304, RNA1509_39662} {RNA1310_216, RNA1509_1095, RNA1509_14304, RNA1509_39662} {RNA1509_1095, RNA1509_14304, RNA1509_39662, RNA815_117.1} |
| 2. | MligTC455_16258 | 1066 | 22.22 | Mlig455_028157 | Neo: - Age: - |
MORF4L1 | 1.767 | - | - | - | - | 0.960 | 0.807 | Mlig455_028157 {REF} {Length: 1642} {TRANSSPLICED} {Pfam: MRG [PF05712.15, score=88.2]; RNA binding activity-knot of a chromodomain [PF11717.10, score=50.1]} {Human: ENSG00000185787, MORF4L1, mortality factor 4 like 1, [RH, Score=189, Expect=1e-56]} {Mouse: ENSMUSG00000062270, Morf4l1, mortality factor 4 like 1, [RH, Score=189, Expect=9e-57]} {Dmel: FBgn0027378, MRG15, MORF-related gene 15, [RH, Score=87.0, Expect=2e-18]} {Celegans: WBGene00003406, mrg-1, MRG (Mortality factor-Related Gene) related, [RH, Score=77.0, Expect=2e-15]} {Smed: dd_Smed_v6_5890_0_4, dd_Smed_v6_5890_0_4, [RH, Score=199, Expect=6e-60]} {RNA1509_31256, RNA1509_31924, RNA1509_35919} {RNA1310_5473, RNA1509_31256, RNA1509_31924, RNA1509_35919} {RNA1509_31256, RNA1509_31924, RNA1509_35919, RNA815_2763.1} |
| 3. | MligTC455_42584 | 525 | 10.95 | Mlig455_042688 | Neo: - Age: Up-Down-Down |
0.961 | - | - | - | - | 0.961 | - | Mlig455_042688 {REF} {Length: 5118} {RNA1509_17142, RNA1509_30424, RNA1509_39157, RNA1509_52976} {RNA1310_33323.1, RNA1509_17142, RNA1509_30424, RNA1509_39157, RNA1509_52976} {RNA1509_17142, RNA1509_30424, RNA1509_39157, RNA1509_52976, RNA815_23056} | |
| 4. | MligTC455_48751 | 2329 | 48.52 | Mlig455_013744 | Neo: Int S/G2/M Age: - |
NAT10 | 0.958 | - | - | - | 0.958 | - | - | Mlig455_013744 {REF} {Length: 3315} {TRANSSPLICED} {Pfam: GNAT acetyltransferase 2 [PF13718.8, score=306.7]; Helicase [PF05127.16, score=192.4]; Possible tRNA binding domain [PF13725.8, score=150.4]; Domain of unknown function (DUF1726) [PF08351.13, score=111.6]} {Human: ENSG00000135372, NAT10, N-acetyltransferase 10, [RH, Score=966, Expect=0.0]} {Mouse: ENSMUSG00000027185, Nat10, N-acetyltransferase 10, [RH, Score=957, Expect=0.0]} {Dmel: FBgn0027330, l(1)G0020, lethal (1) G0020, [RH, Score=876, Expect=0.0]} {Celegans: WBGene00018866, nath-10, RNA cytidine acetyltransferase, [RH, Score=854, Expect=0.0]} {Smed: dd_Smed_v6_10566_0_1, dd_Smed_v6_10566_0_1, [RH, Score=619, Expect=0.0]} {RNA1509_31593, RNA1509_44132, RNA1509_6732} {RNA1310_3627.1, RNA1509_31593, RNA1509_44132, RNA1509_6732} {RNA1509_31593, RNA1509_44132, RNA1509_6732, RNA815_1182} |
| 5. | MligTC455_47422 | 922 | 19.21 | Mlig455_051461 | Neo: Int S/G2/M Age: Down-Up-Up Region-enriched R5: 1.112/0.03317 |
CPSF4 | 0.955 | - | - | - | 0.955 | - | - | Mlig455_051461 {REF} {Length: 1537} {TRANSSPLICED} {Pfam: Zinc finger domain [PF18345.3, score=62.5]; Zinc finger C-x8-C-x5-C-x3-H type (and similar) [PF00642.26, score=57.3]; Torus domain [PF16131.7, score=34.2]; RNA-binding, Nab2-type zinc finger [PF14608.8, score=29.9]; CCCH-type zinc finger [PF18044.3, score=29.7]; Zinc-finger containing family [PF15663.7, score=29.2]; Zinc knuckle [PF00098.25, score=20.7]} {Human: ENSG00000160917, CPSF4, cleavage and polyadenylation specific factor 4, [RH, Score=271, Expect=1e-88]} {Mouse: ENSMUSG00000029625, Cpsf4, cleavage and polyadenylation specific factor 4, [RH, Score=271, Expect=1e-88]} {Dmel: FBgn0015621, Clp, Clipper, [RH, Score=249, Expect=7e-80]} {Celegans: WBGene00044329, cpsf-4, Cleavage and Polyadenylation Specificity Factor, [RH, Score=235, Expect=2e-74]} {Smed: dd_Smed_v6_4069_0_1, dd_Smed_v6_4069_0_1, [RH, Score=259, Expect=4e-84]} {RNA1509_31717} {RNA1310_19692.1} {RNA815_8519} |
| 6. | MligTC455_21301 | 2418 | 50.37 | Mlig455_055218, Mlig455_055312 | Neo: - Age: - Regeneration-enriched BL: 2.253 |
HNRNPR, SYNCRIP | 0.954 | - | - | - | - | - | 0.954 | Mlig455_055218 {REF} {Length: 3254} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=142.8]; Heterogeneous nuclear ribonucleoprotein Q acidic domain [PF18360.3, score=39.7]; Occluded RNA-recognition motif [PF16842.7, score=23.6]; RNA recognition motif [PF16367.7, score=22.7]} {Human: ENSG00000135316, SYNCRIP, synaptotagmin binding cytoplasmic RNA interacting protein, [RH, Score=373, Expect=7e-120]; ENSG00000282958, HNRNPR, heterogeneous nuclear ribonucleoprotein R, [RH, Score=357, Expect=1e-112]; ENSG00000125944, HNRNPR, heterogeneous nuclear ribonucleoprotein R, [RH, Score=357, Expect=1e-112]} {Mouse: ENSMUSG00000032423, Syncrip, synaptotagmin binding, cytoplasmic RNA interacting protein, [RH, Score=372, Expect=1e-119]; ENSMUSG00000066037, Hnrnpr, heterogeneous nuclear ribonucleoprotein R, [RH, Score=358, Expect=4e-113]} {Dmel: FBgn0038826, Syp, Syncrip, [RH, Score=404, Expect=4e-130]} {Celegans: WBGene00002000, hrp-2, HnRNP A1 homolog, [RH, Score=315, Expect=3e-97]} {Smed: dd_Smed_v6_2228_0_1, dd_Smed_v6_2228_0_1, [Score=258, Expect=1e-75]} {RNA1509_41895, RNA1509_4811} {RNA1310_12864, RNA1509_4811} {RNA1509_4811, RNA815_4749.1} Mlig455_055312 {REF} {Length: 3347} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=144.4]; Heterogeneous nuclear ribonucleoprotein Q acidic domain [PF18360.3, score=39.7]; Occluded RNA-recognition motif [PF16842.7, score=23.5]; RNA recognition motif [PF16367.7, score=21.9]} {Human: ENSG00000282958, HNRNPR, heterogeneous nuclear ribonucleoprotein R, [RH, Score=355, Expect=6e-112]; ENSG00000125944, HNRNPR, heterogeneous nuclear ribonucleoprotein R, [RH, Score=355, Expect=6e-112]} {Mouse: ENSMUSG00000066037, Hnrnpr, heterogeneous nuclear ribonucleoprotein R, [RH, Score=356, Expect=2e-112]} {Dmel: FBgn0038826, Syp, Syncrip, [RH, Score=405, Expect=2e-130]} {Celegans: WBGene00002000, hrp-2, HnRNP A1 homolog, [RH, Score=315, Expect=2e-97]} {Smed: dd_Smed_v6_2228_0_1, dd_Smed_v6_2228_0_1, [Score=256, Expect=8e-75]} {RNA1509_41895} {RNA1310_12864} {RNA815_4749.1} |
Berezikov Lab - 2020-2021 © ERIBA