M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_23635

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_23635 11 0.22 Mlig455_067931

Neo: Germline

Age: -

 Mlig455_067931 {REF} {Length: 2254} {RNA1509_46642} {RNA1310_7864} {RNA815_30316}

Cumulative graph for MligTC455_23635

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.763 0.674 1.00000 1.00000
RegionR2 2.368 0.674 0.15055 0.48451
RegionR3 -0.657 0.674 1.00000 1.00000
RegionR4 0.559 0.674 0.99970 1.00000
RegionR5 -1.467 0.674 0.99986 1.00000
RegionR6 -0.009 0.674 0.82760 1.00000
RegionR7 0.409 0.674 0.99989 1.00000
RegionR8 0.56 0.674 0.99988 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 2.881 0.674 0.99979 1.00000
RegenerationR2 1.894 0.674 0.11072 0.52044
RegenerationR3 4.319 0.674 0.03824 0.34474
RegenerationR4 2.114 0.674 0.16919 0.60554
RegenerationR5 2.856 0.674 0.05219 0.36791
RegenerationR6 1.807 0.674 0.20383 0.54571
RegenerationBL 0.947 0.674 0.99973 1.00000
RegenerationTP 4.161 0.674 0.09068 0.47293


Genes with expression patterns similar to MligTC455_23635

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_23635 11 0.22 Mlig455_067931

Neo: Germline

Age: -

 3 - 1.000 - - 1.000 1.000 Mlig455_067931 {REF} {Length: 2254} {RNA1509_46642} {RNA1310_7864} {RNA815_30316}
2. MligTC455_50842 33 0.68 Mlig455_046712

Neo: Germline

Age: logFC(26M/2M)=-0.808

 ARHGAP11A 1.918 - 0.942 - - 0.976 - Mlig455_046712 {REF} {Length: 2034} {Pfam: RhoGAP domain [PF00620.29, score=117.4]} {Human: ENSG00000198826, ARHGAP11A, Rho GTPase activating protein 11A, [RH, Score=126, Expect=1e-30]; ENSG00000275568, ARHGAP11A, Rho GTPase activating protein 11A, [RH, Score=126, Expect=1e-30]; ENSG00000282168, ARHGAP11A, Rho GTPase activating protein 11A, [RH, Score=124, Expect=5e-31]} {Mouse: ENSMUSG00000041219, Arhgap11a, Rho GTPase activating protein 11A, [RH, Score=115, Expect=6e-28]} {Dmel: FBgn0259216, RhoGAP102A, Rho GTPase activating protein at 102A, [RH, Score=75.9, Expect=2e-14]} {Celegans: WBGene00001559, gei-1, GEX Interacting protein, [Score=89.0, Expect=1e-18]} {Smed: dd_Smed_v6_6320_0_1, dd_Smed_v6_6320_0_1, [Score=93.2, Expect=2e-20]} {RNA1509_48726} {RNA1310_15193, RNA1509_48726} {RNA1509_48726, RNA815_14855}
3. MligTC455_50843 66 1.38 Mlig455_046856

Neo: Germline

Age: Down-Up-Down

 ARHGAP11A 1.896 - 0.922 - - 0.974 - Mlig455_046856 {REF} {Length: 1901} {Pfam: RhoGAP domain [PF00620.29, score=92.0]} {Human: ENSG00000198826, ARHGAP11A, Rho GTPase activating protein 11A, [Score=90.1, Expect=7e-19]; ENSG00000275568, ARHGAP11A, Rho GTPase activating protein 11A, [Score=90.1, Expect=7e-19]; ENSG00000282168, ARHGAP11A, Rho GTPase activating protein 11A, [Score=89.0, Expect=1e-18]} {Mouse: ENSMUSG00000041219, Arhgap11a, Rho GTPase activating protein 11A, [Score=81.3, Expect=2e-16]} {Dmel: FBgn0038747, RhoGAP92B, Rho GTPase activating protein at 92B, [Score=63.5, Expect=1e-10]} {Celegans: WBGene00001559, gei-1, GEX Interacting protein, [Score=84.3, Expect=2e-17]} {Smed: dd_Smed_v6_6320_0_1, dd_Smed_v6_6320_0_1, [Score=70.9, Expect=3e-13]} {RNA1509_48726} {RNA1310_15193} {RNA815_14855}
4. MligTC455_17289 79 1.65 Mlig455_045597

Neo: Germline

Age: -

 1.81 - 0.819 - - 0.991 - Mlig455_045597 {REF} {Length: 1961} {Pfam: Outer membrane protein (OmpH-like) [PF03938.16, score=19.1]} {RNA1509_31195} {RNA1310_15853.1} {RNA815_11413}
5. MligTC455_03307 7 0.15 Mlig455_046350

Neo: -

Age: -

 0.993 - - - - 0.993 - Mlig455_046350 {REF} {Length: 438} {NoTransDecoderORF} {RNA1310_66730}
6. MligTC455_39427 22 0.46 Mlig455_007270

Neo: -

Age: logFC(26M/2M)=0.362

 0.993 - - - - 0.993 - Mlig455_007270 {REF} {Length: 1486} {NoTransDecoderORF} {RNA1509_36205} {RNA1310_29295.2} {RNA815_16664.1}
7. MligTC455_05686 18 0.38 Mlig455_040578, Mlig455_040661

Neo: -

Age: -

 FCN2 0.992 - - - - 0.992 -

Mlig455_040578 {REF} {Length: 1086} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=151.0]} {Human: ENSG00000160339, FCN2, ficolin 2, [Score=136, Expect=6e-38]} {Mouse: ENSMUSG00000033544, Angptl1, angiopoietin-like 1, [Score=129, Expect=1e-33]; ENSMUSG00000026835, Fcnb, ficolin B, [Score=127, Expect=2e-34]; ENSMUSG00000004105, Angptl2, angiopoietin-like 2, [Score=125, Expect=2e-32]; ENSMUSG00000026938, Fcna, ficolin A, [Score=124, Expect=6e-33]; ENSMUSG00000026841, Fibcd1, fibrinogen C domain containing 1, [Score=123, Expect=9e-32]} {Dmel: FBgn0034160, CG5550, [Score=110, Expect=1e-28]} {Smed: dd_Smed_v6_74244_0_1, dd_Smed_v6_74244_0_1, [Score=54.7, Expect=1e-09]} {RNA1509_26827} {RNA1310_33619.1} {RNA815_17173.3}

Mlig455_040661 {REF} {Length: 1086} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=151.0]} {Human: ENSG00000160339, FCN2, ficolin 2, [Score=136, Expect=6e-38]} {Mouse: ENSMUSG00000033544, Angptl1, angiopoietin-like 1, [Score=129, Expect=1e-33]; ENSMUSG00000026835, Fcnb, ficolin B, [Score=127, Expect=2e-34]; ENSMUSG00000004105, Angptl2, angiopoietin-like 2, [Score=125, Expect=2e-32]; ENSMUSG00000026938, Fcna, ficolin A, [Score=124, Expect=6e-33]; ENSMUSG00000026841, Fibcd1, fibrinogen C domain containing 1, [Score=123, Expect=9e-32]} {Dmel: FBgn0034160, CG5550, [Score=110, Expect=1e-28]} {Smed: dd_Smed_v6_74244_0_1, dd_Smed_v6_74244_0_1, [Score=54.7, Expect=1e-09]} {RNA1509_26827} {RNA1310_33619.1} {RNA815_17173.3}
8. MligTC455_22997 4 0.09 Mlig455_003046, Mlig455_003249

Neo: -

Age: -

 0.992 - - - - 0.992 -

Mlig455_003046 {REF} {Length: 403} {Pfam: Cornifin (SPRR) family [PF02389.17, score=29.0]} {RNA1310_109391.1}

Mlig455_003249 {REF} {Length: 1008} {TRANSSPLICED} {Pfam: Cornifin (SPRR) family [PF02389.17, score=44.7]} {RNA1509_59416} {RNA1310_130932} {RNA815_8811}
9. MligTC455_16496 2 0.04 Mlig455_042668

Neo: -

Age: -

 0.991 - - - - 0.991 - Mlig455_042668 {REF} {Length: 1833} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=144.1]} {Smed: dd_Smed_v6_37545_0_1, dd_Smed_v6_37545_0_1, [Score=57.4, Expect=1e-08]} {RNA1310_43502} {RNA815_38744}
10. MligTC455_40336 56 1.16 Mlig455_003699, Mlig455_003907

Neo: -

Age: Up-Down-Down

Regeneration-upregulated R3: 7.384

Regeneration-enriched R3: 7.384

 0.991 - - - - 0.991 -

Mlig455_003699 {REF} {Length: 386} {NoTransDecoderORF} {RNA1509_35761} {RNA1310_13240} {RNA815_5118}

Mlig455_003907 {REF} {Length: 420} {NoTransDecoderORF} {RNA1509_35761} {RNA1310_13240} {RNA815_5118}
11. MligTC455_42043 105 2.19 Mlig455_001159

Neo: -

Age: Down-Up-Down

Regeneration-downregulated R5: -5.440

Regeneration-depleted R5: -5.440

 0.991 - - - - 0.991 - Mlig455_001159 {REF} {Length: 641} {NoTransDecoderORF} {RNA1509_40090} {RNA1310_51492, RNA1509_40090} {RNA1509_40090, RNA815_59648}
12. MligTC455_04678 42 0.88 Mlig455_016023, Mlig455_054944, Mlig455_054958

Neo: -

Age: Down-Up-Up

 0.988 - - - - 0.988 -

Mlig455_016023 {REF} {Length: 1192} {RNA1310_37889.2} {RNA815_33198}

Mlig455_054944 {REF} {Length: 1112} {Pfam: DDE superfamily endonuclease [PF13358.8, score=38.6]} {Smed: dd_Smed_v6_16239_0_4, dd_Smed_v6_16239_0_4, [Score=76.3, Expect=3e-18]} {RNA1310_68239} {RNA815_33198}

Mlig455_054958 {REF} {Length: 1024} {Smed: dd_Smed_v6_16239_0_4, dd_Smed_v6_16239_0_4, [Score=57.8, Expect=6e-12]} {RNA1310_32963} {RNA815_33198}
13. MligTC455_52783 14 0.29 Mlig455_034377, Mlig455_043872

Neo: -

Age: Down-Up-Down

 LRRC4 0.986 - - - - 0.986 -

Mlig455_034377 {REF} {Length: 2903} {Pfam: Leucine rich repeat [PF13855.8, score=52.4]; Immunoglobulin domain [PF13927.8, score=43.0]; Immunoglobulin I-set domain [PF07679.18, score=33.7]; Immunoglobulin domain [PF13895.8, score=31.8]; BspA type Leucine rich repeat region (6 copies) [PF13306.8, score=25.6]; Immunoglobulin domain [PF00047.27, score=25.1]; Immunoglobulin V-set domain [PF07686.19, score=23.8]; Leucine Rich repeats (2 copies) [PF12799.9, score=21.0]} {Human: ENSG00000128594, LRRC4, leucine rich repeat containing 4, [Score=83.6, Expect=4e-16]; ENSG00000101825, MXRA5, matrix remodeling associated 5, [Score=81.3, Expect=4e-15]} {Mouse: ENSMUSG00000049939, Lrrc4, leucine rich repeat containing 4, [Score=83.6, Expect=3e-16]} {Dmel: FBgn0015399, kek1, kekkon-1, [RH, Score=92.4, Expect=4e-19]} {Celegans: WBGene00004854, slt-1, Slit homolog 1 protein, [Score=63.2, Expect=5e-10]} {Smed: dd_Smed_v6_18031_0_1, dd_Smed_v6_18031_0_1, [RH, Score=140, Expect=5e-35]} {RNA1310_61519} {RNA815_32750}

Mlig455_043872 {REF} {Length: 2611} {TRANSSPLICED} {Pfam: Leucine rich repeat [PF13855.8, score=53.2]; Immunoglobulin domain [PF13927.8, score=43.0]; Immunoglobulin I-set domain [PF07679.18, score=33.7]; Immunoglobulin domain [PF13895.8, score=31.8]; Immunoglobulin domain [PF00047.27, score=25.1]; BspA type Leucine rich repeat region (6 copies) [PF13306.8, score=24.0]; Immunoglobulin V-set domain [PF07686.19, score=23.8]; Leucine Rich repeats (2 copies) [PF12799.9, score=19.8]} {Human: ENSG00000128594, LRRC4, leucine rich repeat containing 4, [Score=82.0, Expect=1e-15]; ENSG00000101825, MXRA5, matrix remodeling associated 5, [Score=81.3, Expect=4e-15]} {Mouse: ENSMUSG00000049939, Lrrc4, leucine rich repeat containing 4, [Score=81.6, Expect=1e-15]} {Dmel: FBgn0015399, kek1, kekkon-1, [RH, Score=94.7, Expect=9e-20]} {Celegans: WBGene00004854, slt-1, Slit homolog 1 protein, [Score=63.5, Expect=4e-10]} {Smed: dd_Smed_v6_18031_0_1, dd_Smed_v6_18031_0_1, [Score=140, Expect=5e-35]} {RNA1310_61519} {RNA815_32750}
14. MligTC455_55344 1399 29.15 Mlig455_011394

Neo: -

Age: -

 0.981 - - - - 0.981 - Mlig455_011394 {REF} {Length: 12} {NoTransDecoderORF}
15. MligTC455_38156 18 0.38 Mlig455_042121

Neo: -

Age: -

 ATP7A 0.979 - - - - 0.979 - Mlig455_042121 {REF} {Length: 5074} {TRANSSPLICED} {Pfam: Heavy-metal-associated domain [PF00403.28, score=274.9]; E1-E2 ATPase [PF00122.22, score=156.0]; haloacid dehalogenase-like hydrolase [PF00702.28, score=155.4]; haloacid dehalogenase-like hydrolase [PF08282.14, score=34.0]} {Human: ENSG00000165240, ATP7A, ATPase copper transporting alpha, [RH, Score=1022, Expect=0.0]; ENSG00000123191, ATP7B, ATPase copper transporting beta, [RH, Score=991, Expect=0.0]} {Mouse: ENSMUSG00000033792, Atp7a, ATPase, Cu++ transporting, alpha polypeptide, [RH, Score=1034, Expect=0.0]} {Dmel: FBgn0030343, ATP7, [RH, Score=916, Expect=0.0]} {Celegans: WBGene00000834, cua-1, CU (Copper) ATPase; Copper transporting ATPase, [RH, Score=789, Expect=0.0]} {Smed: dd_Smed_v6_7126_0_1, dd_Smed_v6_7126_0_1, [RH, Score=992, Expect=0.0]} {RNA1509_10172, RNA1509_15890, RNA1509_31821} {RNA1310_1414, RNA1509_10172, RNA1509_15890, RNA1509_31821} {RNA1509_10172, RNA1509_15890, RNA1509_31821, RNA815_389}
16. MligTC455_05820 56 1.16 Mlig455_069219

Neo: Germline

Age: -

 0.975 - - - - 0.975 - Mlig455_069219 {REF} {Length: 1028}
17. MligTC455_53735 124 2.58 Mlig455_043944, Mlig455_044023

Neo: Int S/G2/M

Age: Up-Down-Down

Region-enriched R2: 4.522/0.00648

 0.975 - - - - 0.975 -

Mlig455_043944 {REF} {Length: 4237} {RNA1509_45477} {RNA1310_32327} {RNA815_37449}

Mlig455_044023 {REF} {Length: 3658} {RNA1509_45477} {RNA1310_32327} {RNA815_32136}
18. MligTC455_53881 39 0.81 Mlig455_032561

Neo: -

Age: -

 PRIMPOL 0.974 - - - - 0.974 - Mlig455_032561 {REF} {Length: 2904} {TRANSSPLICED} {Pfam: Herpesviridae UL52/UL70 DNA primase [PF03121.17, score=39.0]} {Human: ENSG00000164306, PRIMPOL, primase and DNA directed polymerase, [RH, Score=144, Expect=5e-37]} {Mouse: ENSMUSG00000038225, Primpol, primase and polymerase (DNA-directed), [RH, Score=144, Expect=3e-37]} {RNA1310_43496} {RNA815_46866}
19. MligTC455_32634 3 0.06 Mlig455_006255

Neo: -

Age: -

 0.972 - - - - 0.972 - Mlig455_006255 {REF} {Length: 401} {RNA1509_41966} {RNA1310_20375} {RNA815_18013.1}
20. MligTC455_22169 8 0.17 Mlig455_056662

Neo: -

Age: -

 OSGEP 0.971 - - - - 0.971 - Mlig455_056662 {REF} {Length: 1733} {TRANSSPLICED} {Pfam: tRNA N6-adenosine threonylcarbamoyltransferase [PF00814.27, score=284.0]; mRNA cleavage and polyadenylation factor CLP1 P-loop [PF16575.7, score=64.6]; AAA ATPase domain [PF13191.8, score=19.2]} {Human: ENSG00000092094, OSGEP, O-sialoglycoprotein endopeptidase, [Score=485, Expect=1e-170]} {Mouse: ENSMUSG00000006289, Osgep, O-sialoglycoprotein endopeptidase, [Score=486, Expect=4e-171]} {Dmel: FBgn0283681, Tcs3, [Score=457, Expect=5e-160]} {Celegans: WBGene00022166, Y71H2AM.1, Probable tRNA N6-adenosine threonylcarbamoyltransferase, [Score=436, Expect=6e-152]} {Smed: dd_Smed_v6_3150_0_1, dd_Smed_v6_3150_0_1, [RH, Score=474, Expect=1e-166]} {RNA1509_6538} {RNA1310_17345.2} {RNA815_14057}
21. MligTC455_14539 5 0.11 Mlig455_041840

Neo: -

Age: -

 0.97 - - - - 0.970 - Mlig455_041840 {REF} {Length: 577} {NoTransDecoderORF}
22. MligTC455_14769 29 0.6 Mlig455_048253

Neo: -

Age: -

 HSPA5 0.97 - - - - 0.970 - Mlig455_048253 {REF} {Length: 2766} {Pfam: Hsp70 protein [PF00012.22, score=129.8]} {Human: ENSG00000044574, HSPA5, heat shock protein family A (Hsp70) member 5, [Score=114, Expect=4e-28]; ENSG00000109971, HSPA8, heat shock protein family A (Hsp70) member 8, [Score=109, Expect=7e-29]} {Mouse: ENSMUSG00000026864, Hspa5, heat shock protein 5, [Score=114, Expect=3e-28]} {Dmel: FBgn0001218, Hsc70-3, Heat shock 70-kDa protein cognate 3, [Score=115, Expect=8e-29]} {Celegans: WBGene00002008, hsp-4, Heat shock 70 kDa protein D, [Score=115, Expect=5e-29]} {Smed: dd_Smed_v6_320_0_4, dd_Smed_v6_320_0_4, [Score=122, Expect=5e-34]} {RNA1310_30893} {RNA815_43878}
23. MligTC455_28433 44 0.92 Mlig455_039556, Mlig455_051361

Neo: -

Age: -

 0.966 - - - - 0.966 -

Mlig455_039556 {REF} {Length: 3654} {Pfam: hAT family C-terminal dimerisation region [PF05699.16, score=33.4]} {RNA1509_33160} {RNA1310_6176.1} {RNA815_7664}

Mlig455_051361 {REF} {Length: 2240} {Smed: dd_Smed_v6_17002_0_4, dd_Smed_v6_17002_0_4, [Score=60.8, Expect=1e-09]} {RNA1509_33160} {RNA1310_6176.1} {RNA815_7664}
24. MligTC455_30242 16 0.33 Mlig455_044882, Mlig455_044883, Mlig455_044986, Mlig455_044988, Mlig455_052686, Mlig455_070556

Neo: -

Age: logFC(26M/2M)=0.714

 PIF1 0.965 - - - - 0.965 -

Mlig455_044882 {REF} {Length: 7531} {Pfam: Helitron helicase-like domain at N-terminus [PF14214.8, score=93.7]} {RNA1509_2607} {RNA1310_72.1} {RNA815_1193}

Mlig455_044883 {REF} {Length: 5877} {Pfam: PIF1-like helicase [PF05970.16, score=89.6]; Helitron helicase-like domain at N-terminus [PF14214.8, score=80.5]; AAA domain [PF13604.8, score=52.4]; AAA domain [PF13245.8, score=36.0]; AAA ATPase domain [PF13191.8, score=19.0]; ATP-dependent RecD-like DNA helicase SH3 domain [PF18335.3, score=18.8]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=64.7, Expect=5e-10]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=65.5, Expect=3e-10]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=62.0, Expect=2e-09]} {Celegans: WBGene00004028, pif-1, ATP-dependent DNA helicase PIF1, [Score=63.5, Expect=5e-10]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=58.5, Expect=1e-08]} {RNA1509_2607} {RNA1310_72.1} {RNA815_1193}

Mlig455_044986 {REF} {Length: 2141} {Pfam: OTU-like cysteine protease [PF02338.21, score=24.6]; Family of unknown function (DUF6139) [PF19636.1, score=18.9]; Peptidase C65 Otubain [PF10275.11, score=18.3]} {RNA1509_7562} {RNA1310_912.1} {RNA815_4349}

Mlig455_044988 {REF} {Length: 7397} {Pfam: PIF1-like helicase [PF05970.16, score=89.6]; Helitron helicase-like domain at N-terminus [PF14214.8, score=80.5]; AAA domain [PF13604.8, score=52.4]; AAA domain [PF13245.8, score=36.0]; AAA ATPase domain [PF13191.8, score=19.0]; ATP-dependent RecD-like DNA helicase SH3 domain [PF18335.3, score=18.8]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=64.7, Expect=5e-10]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=65.5, Expect=3e-10]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=62.0, Expect=2e-09]} {Celegans: WBGene00004028, pif-1, ATP-dependent DNA helicase PIF1, [Score=63.5, Expect=5e-10]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=58.5, Expect=1e-08]} {RNA1509_2607} {RNA1310_72.1} {RNA815_1193}

Mlig455_052686 {REF} {Length: 8043} {TRANSSPLICED} {Pfam: PIF1-like helicase [PF05970.16, score=99.0]; Helitron helicase-like domain at N-terminus [PF14214.8, score=80.3]; AAA domain [PF13604.8, score=61.3]; AAA domain [PF13245.8, score=35.9]; Helicase [PF02689.16, score=23.2]; UvrD-like helicase C-terminal domain [PF13538.8, score=22.5]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=125, Expect=5e-29]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=128, Expect=5e-30]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=122, Expect=2e-28]} {Celegans: WBGene00004028, pif-1, ATP-dependent DNA helicase PIF1, [Score=120, Expect=5e-28]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=112, Expect=3e-25]} {RNA1509_2607} {RNA1310_5853.1} {RNA815_4349}

Mlig455_070556 {REF} {Length: 425} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=49.3, Expect=4e-07]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=49.7, Expect=2e-07]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=46.2, Expect=2e-06]} {Celegans: WBGene00004028, pif-1, ATP-dependent DNA helicase PIF1, [Score=46.6, Expect=1e-06]} {RNA1509_2607} {RNA1310_5853.3} {RNA815_5517.2}
25. MligTC455_31511 3 0.06 Mlig455_053044

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=1.017

 CAPN5 0.965 - - - - 0.965 - Mlig455_053044 {REF} {Length: 4182} {Pfam: Calpain family cysteine protease [PF00648.23, score=187.0]; Calpain large subunit, domain III [PF01067.24, score=50.9]; C2 domain [PF00168.32, score=34.9]} {Human: ENSG00000149260, CAPN5, calpain 5, [Score=298, Expect=2e-91]} {Mouse: ENSMUSG00000035547, Capn5, calpain 5, [Score=295, Expect=3e-90]} {Dmel: FBgn0012051, CalpA, Calpain-A, [Score=182, Expect=2e-49]} {Celegans: WBGene00006606, tra-3, Calpain-5, [Score=195, Expect=2e-53]} {Smed: dd_Smed_v6_8673_0_1, dd_Smed_v6_8673_0_1, [Score=204, Expect=3e-56]} {RNA1509_18066} {RNA1310_11620} {RNA815_3340}
26. MligTC455_53084 31 0.64 Mlig455_032500

Neo: -

Age: -

 SLC22A6 0.965 - - - - 0.965 - Mlig455_032500 {REF} {Length: 2144} {Human: ENSG00000197901, SLC22A6, solute carrier family 22 member 6, [Score=119, Expect=8e-31]; ENSG00000172940, SLC22A13, solute carrier family 22 member 13, [Score=116, Expect=8e-30]; ENSG00000197375, SLC22A5, solute carrier family 22 member 5, [Score=114, Expect=5e-29]} {Mouse: ENSMUSG00000074028, Slc22a13, solute carrier family 22 (organic cation transporter), member 13, [Score=122, Expect=3e-32]; ENSMUSG00000063652, Slc22a21, solute carrier family 22 (organic cation transporter), member 21, [Score=120, Expect=2e-31]} {Dmel: FBgn0019952, Orct, Organic cation transporter, [Score=124, Expect=1e-32]} {Celegans: WBGene00022348, Y82E9BR.16, [Score=97.8, Expect=2e-23]} {Smed: dd_Smed_v6_10826_0_1, dd_Smed_v6_10826_0_1, [Score=95.9, Expect=1e-24]} {RNA1509_47524} {RNA1310_11382, RNA1509_47524} {RNA1509_47524, RNA815_3922}
27. MligTC455_53883 7 0.15 Mlig455_032567

Neo: -

Age: Up-Down-Up

 PRIMPOL 0.965 - - - - 0.965 - Mlig455_032567 {REF} {Length: 3117} {TRANSSPLICED} {Pfam: Herpesviridae UL52/UL70 DNA primase [PF03121.17, score=40.3]} {Human: ENSG00000164306, PRIMPOL, primase and DNA directed polymerase, [Score=105, Expect=9e-24]} {Mouse: ENSMUSG00000038225, Primpol, primase and polymerase (DNA-directed), [Score=120, Expect=3e-29]} {RNA1310_43496} {RNA815_46866}
28. MligTC455_09478 42 0.88 Mlig455_008774

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_008774 {REF} {Length: 1365} {Pfam: RAM signalling pathway protein [PF10428.11, score=19.4]} {RNA1509_53279} {RNA1310_34746} {RNA815_43491}
29. MligTC455_01007 2 0.04 Mlig455_017081

Neo: -

Age: -

 0.963 - 0.963 - - - - Mlig455_017081 {REF} {Length: 454} {NoTransDecoderORF} {RNA1509_30974} {RNA1310_87293.1} {RNA815_30500.1}
30. MligTC455_03095 5 0.11 Mlig455_010307

Neo: Int S/G2/M

Age: -

 0.962 - 0.962 - - - - Mlig455_010307 {REF} {Length: 660} {NoTransDecoderORF}
31. MligTC455_18941 24 0.5 Mlig455_001833, Mlig455_062225

Neo: -

Age: -

 0.962 - - - - 0.962 -

Mlig455_001833 {REF} {Length: 226} {NoTransDecoderORF} {RNA1509_59635} {RNA1310_47855} {RNA815_26284}

Mlig455_062225 {REF} {Length: 283} {NoTransDecoderORF} {RNA1509_34461} {RNA1310_47855} {RNA815_26284}
32. MligTC455_00508 5 0.11 Mlig455_052331

Neo: -

Age: -

 0.961 - - - - 0.961 - Mlig455_052331 {REF} {Length: 190} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_66135} {RNA815_38923}
33. MligTC455_03554 12 0.25 Mlig455_035421

Neo: Int S/G2/M

Age: -

 0.961 - 0.961 - - - - Mlig455_035421 {REF} {Length: 611} {RNA1310_52309}
34. MligTC455_12756 117 2.44 Mlig455_036000

Neo: -

Age: -

 0.961 - - - - 0.961 - Mlig455_036000 {REF} {Length: 1329} {RNA1509_5640} {RNA1310_31330} {RNA815_4830.1}
35. MligTC455_54834 8 0.16 Mlig455_037179

Neo: -

Age: -

 0.961 - - - - 0.961 - Mlig455_037179 {REF} {Length: 202} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_66135} {RNA815_38923}
36. MligTC455_56994 5 0.1 Mlig455_068902

Neo: -

Age: -

 0.961 - - - - 0.961 - Mlig455_068902 {REF} {Length: 460} {Mouse: ENSMUSG00000073490, Ifi207, interferon activated gene 207, [Score=50.8, Expect=2e-08]} {RNA1509_23358} {RNA1310_687} {RNA815_55072.1}
37. MligTC455_07212 41 0.85 Mlig455_020125

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_020125 {REF} {Length: 949} {TRANSSPLICED} {RNA1509_32443, RNA1509_51241} {RNA1310_24373, RNA1509_32443, RNA1509_51241} {RNA1509_32443, RNA1509_51241, RNA815_57461}
38. MligTC455_11166 137 2.85 Mlig455_001472

Neo: -

Age: Up-Up-Down

 0.958 - - - - 0.958 - Mlig455_001472 {REF} {Length: 3543} {Pfam: Beta-lactamase [PF00144.26, score=76.3]} {RNA1509_17855} {RNA1310_14062, RNA1509_17855} {RNA1509_17855, RNA815_7859}
39. MligTC455_32260 4 0.08 Mlig455_036086

Neo: -

Age: Up-Down-Down

 0.958 - - - - 0.958 - Mlig455_036086 {REF} {Length: 3691} {TRANSSPLICED} {Pfam: Integrase core domain [PF00665.28, score=46.8]; Mab-21 protein [PF03281.16, score=37.1]; Ankyrin repeats (many copies) [PF13637.8, score=21.5]; Zinc knuckle [PF00098.25, score=19.9]} {Smed: dd_Smed_v6_20599_0_1, dd_Smed_v6_20599_0_1, [Score=63.9, Expect=2e-10]} {RNA1509_11087} {RNA1310_25836.1} {RNA815_3666.1}
40. MligTC455_01939 5 0.11 Mlig455_014461

Neo: -

Age: Up-Down-Down

 0.957 - - - - 0.957 - Mlig455_014461 {REF} {Length: 3042} {RNA1310_63926} {RNA815_36221}
41. MligTC455_01957 5 0.11 Mlig455_045451

Neo: -

Age: -

 0.957 - 0.957 - - - - Mlig455_045451 {REF} {Length: 773} {RNA1509_47009} {RNA1310_60641} {RNA815_62725}
42. MligTC455_11402 21 0.44 Mlig455_058743

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_058743 {REF} {Length: 1111} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_59423} {RNA1310_39651} {RNA815_29881}
43. MligTC455_08163 12 0.24 Mlig455_031850

Neo: -

Age: -

 0.956 - 0.956 - - - - Mlig455_031850 {REF} {Length: 930} {RNA1509_57429} {RNA1310_73907} {RNA815_44596}
44. MligTC455_11981 20 0.42 Mlig455_039506

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_039506 {REF} {Length: 1301} {RNA1310_121196}
45. MligTC455_57695 2 0.04 Mlig455_029006

Neo: -

Age: -

 0.956 - 0.956 - - - - Mlig455_029006 {REF} {Length: 695} {RNA1509_50076} {RNA1310_21166} {RNA815_38885}
46. MligTC455_34008 27 0.57 Mlig455_014925

Neo: Germline

Age: -

 0.955 - 0.955 - - - - Mlig455_014925 {REF} {Length: 2371} {Pfam: KH domain [PF00013.31, score=27.9]} {Smed: dd_Smed_v6_38277_0_1, dd_Smed_v6_38277_0_1, [RH, Score=49.3, Expect=2e-06]} {RNA1509_5819} {RNA1310_18920} {RNA815_4984}
47. MligTC455_53056 433 9.02 Mlig455_016578, Mlig455_035599, Mlig455_035608

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.573

Region-enriched R3: 3.354/0.00002

 0.954 - - - - 0.954 -

Mlig455_016578 {REF} {Length: 7355} {Pfam: Haemolysin-type calcium binding protein related domain [PF06594.13, score=47.1]; EAL domain [PF00563.22, score=20.8]} {Smed: dd_Smed_v6_500_0_1, dd_Smed_v6_500_0_1, [Score=64.3, Expect=1e-10]} {RNA1509_42800} {RNA1310_945.1} {RNA815_1511.1}

Mlig455_035599 {REF} {Length: 7073} {Pfam: Haemolysin-type calcium binding protein related domain [PF06594.13, score=47.5]; RTX C-terminal domain [PF08339.12, score=19.7]} {Smed: dd_Smed_v6_500_0_1, dd_Smed_v6_500_0_1, [Score=65.1, Expect=6e-11]} {RNA1509_42800} {RNA1310_945.1} {RNA815_1511.1}

Mlig455_035608 {REF} {Length: 5924} {Pfam: Haemolysin-type calcium binding protein related domain [PF06594.13, score=34.1]; RTX C-terminal domain [PF08339.12, score=22.3]} {Smed: dd_Smed_v6_500_0_1, dd_Smed_v6_500_0_1, [Score=65.9, Expect=3e-11]} {RNA1509_10045, RNA1509_40204, RNA1509_47229, RNA1509_54966} {RNA1310_945.1, RNA1509_10045, RNA1509_40204, RNA1509_47229} {RNA1509_10045, RNA1509_40204, RNA1509_47229, RNA815_1511.1}
48. MligTC455_10243 5 0.11 Mlig455_039297

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_039297 {REF} {Length: 298} {NoTransDecoderORF} {RNA1310_98764}
49. MligTC455_25800 19 0.39 Mlig455_020935

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_020935 {REF} {Length: 1333} {Smed: dd_Smed_v6_91651_0_1, dd_Smed_v6_91651_0_1, [RH, Score=54.7, Expect=7e-10]} {RNA1509_46103} {RNA1310_6410.1} {RNA815_31889}
50. MligTC455_52919 5 0.09 Mlig455_061201

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_061201 {REF} {Length: 2469} {TRANSSPLICED} {Celegans: WBGene00015662, C10A4.1, [Score=65.5, Expect=6e-12]} {Smed: dd_Smed_v6_87095_0_1, dd_Smed_v6_87095_0_1, [Score=53.9, Expect=5e-09]} {RNA1509_47751} {RNA1310_29032, RNA1509_47751}
51. MligTC455_09488 2 0.03 Mlig455_010893

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_010893 {REF} {Length: 632} {NoTransDecoderORF} {RNA1310_115414} {RNA815_63829}
52. MligTC455_09818 17 0.35 Mlig455_044853

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.929

 OSR2 0.952 - - - - 0.952 - Mlig455_044853 {REF} {Length: 2319} {Pfam: Zinc-finger double domain [PF13465.8, score=48.4]; Zinc finger, C2H2 type [PF00096.28, score=43.3]; C2H2-type zinc finger [PF13894.8, score=31.9]; C2H2-type zinc finger [PF13912.8, score=19.6]} {Human: ENSG00000164920, OSR2, odd-skipped related transciption factor 2, [Score=141, Expect=1e-40]; ENSG00000143867, OSR1, odd-skipped related transciption factor 1, [Score=140, Expect=2e-40]} {Mouse: ENSMUSG00000022330, Osr2, odd-skipped related 2, [Score=141, Expect=1e-40]; ENSMUSG00000048387, Osr1, odd-skipped related transcription factor 1, [Score=140, Expect=1e-40]} {Dmel: FBgn0004892, sob, sister of odd and bowl, [Score=142, Expect=3e-39]} {Celegans: WBGene00003846, odd-2, Protein odd-skipped-related 2, [Score=150, Expect=8e-45]} {Smed: dd_Smed_v6_10039_0_1, dd_Smed_v6_10039_0_1, [Score=151, Expect=7e-45]} {RNA1509_28642} {RNA1310_40286} {RNA815_48894}
53. MligTC455_14620 18 0.37 Mlig455_020036

Neo: -

Age: Up-Down-Down

 0.952 - 0.952 - - - - Mlig455_020036 {REF} {Length: 849} {RNA1509_47946} {RNA1310_30363} {RNA815_12464}
54. MligTC455_26391 2 0.05 Mlig455_042080

Neo: Irradiation

Age: -

 CSDE1 0.952 - - - - 0.952 - Mlig455_042080 {REF} {Length: 2190} {TRANSSPLICED} {Pfam: 'Cold-shock' DNA-binding domain [PF00313.24, score=69.0]; S1-like [PF14444.8, score=20.7]} {Human: ENSG00000009307, CSDE1, cold shock domain containing E1, [RH, Score=166, Expect=4e-43]} {Mouse: ENSMUSG00000068823, Csde1, cold shock domain containing E1, RNA binding, [RH, Score=163, Expect=2e-42]} {Dmel: FBgn0263352, Unr, Upstream of N-ras, [RH, Score=167, Expect=2e-43]} {Smed: dd_Smed_v6_598_0_1, dd_Smed_v6_598_0_1, [RH, Score=174, Expect=2e-46]} {RNA1509_29791} {RNA1310_5877} {RNA815_2002}
55. MligTC455_01719 15 0.31 Mlig455_041342

Neo: -

Age: -

 0.951 - 0.951 - - - - Mlig455_041342 {REF} {Length: 436} {NoTransDecoderORF} {RNA1509_10188} {RNA1310_41959.1} {RNA815_19701}
56. MligTC455_01914 4 0.08 Mlig455_068589

Neo: -

Age: Up-Down-Down

 TRO 0.951 - 0.951 - - - - Mlig455_068589 {REF} {Length: 1562} {Human: ENSG00000067445, TRO, trophinin, [Score=66.2, Expect=7e-11]} {RNA1509_35944} {RNA1310_77060} {RNA815_62161}
57. MligTC455_07092 12 0.24 Mlig455_050400

Neo: -

Age: Down-Up-Up

 0.95 - - - - 0.950 - Mlig455_050400 {REF} {Length: 1193} {TRANSSPLICED} {RNA1509_13268} {RNA1310_2251.1} {RNA815_8327}
58. MligTC455_22667 17 0.36 Mlig455_009254

Neo: -

Age: -

 0.95 - 0.950 - - - - Mlig455_009254 {REF} {Length: 1463} {RNA1509_57504} {RNA1310_52420} {RNA815_32601}
59. MligTC455_31375 14 0.28 Mlig455_009265, Mlig455_021464, Mlig455_029989, Mlig455_030262, Mlig455_052944, Mlig455_068274

Neo: -

Age: -

 0.95 - 0.950 - - - -

Mlig455_009265 {REF} {Length: 1932} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=51.3]} {RNA1509_42342} {RNA1310_4557} {RNA815_11143}

Mlig455_021464 {REF} {Length: 1770} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=18.9]} {RNA1509_42342} {RNA1310_18773} {RNA815_20410.1}

Mlig455_029989 {REF} {Length: 1172} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=112.8]} {Smed: dd_Smed_v6_26484_0_6, dd_Smed_v6_26484_0_6, [Score=65.1, Expect=1e-12]} {RNA1509_42342} {RNA1310_4557} {RNA815_16034.1}

Mlig455_030262 {REF} {Length: 1451} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=40.3]} {RNA1509_42342} {RNA1310_4557} {RNA815_16034.1}

Mlig455_052944 {REF} {Length: 1517} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=75.0]} {Smed: dd_Smed_v6_16441_0_5, dd_Smed_v6_16441_0_5, [Score=54.3, Expect=8e-08]} {RNA1509_42342} {RNA1310_4557} {RNA815_16034.1}

Mlig455_068274 {REF} {Length: 1007} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=44.2]} {Smed: dd_Smed_v6_19123_0_8, dd_Smed_v6_19123_0_8, [Score=55.5, Expect=2e-08]} {RNA1509_42342} {RNA1310_4557} {RNA815_16034.1}
60. MligTC455_49872 7 0.15 Mlig455_069574

Neo: -

Age: -

 CHRM4 0.95 - - - - 0.950 - Mlig455_069574 {REF} {Length: 3648} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=158.8]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=61.4]; Serpentine type 7TM GPCR chemoreceptor Srx [PF10328.11, score=36.4]} {Human: ENSG00000180720, CHRM4, cholinergic receptor muscarinic 4, [Score=161, Expect=8e-43]; ENSG00000184984, CHRM5, cholinergic receptor muscarinic 5, [Score=156, Expect=8e-41]; ENSG00000133019, CHRM3, cholinergic receptor muscarinic 3, [Score=156, Expect=1e-40]; ENSG00000181072, CHRM2, cholinergic receptor muscarinic 2, [Score=154, Expect=1e-40]; ENSG00000168539, CHRM1, cholinergic receptor muscarinic 1, [Score=154, Expect=1e-40]} {Mouse: ENSMUSG00000040495, Chrm4, cholinergic receptor, muscarinic 4, [Score=162, Expect=2e-43]; ENSMUSG00000046159, Chrm3, cholinergic receptor, muscarinic 3, cardiac, [Score=157, Expect=6e-41]; ENSMUSG00000045613, Chrm2, cholinergic receptor, muscarinic 2, cardiac, [Score=156, Expect=2e-41]; ENSMUSG00000074939, Chrm5, cholinergic receptor, muscarinic 5, [Score=154, Expect=4e-40]; ENSMUSG00000032773, Chrm1, cholinergic receptor, muscarinic 1, CNS, [Score=154, Expect=8e-41]} {Dmel: FBgn0037546, mAChR-B, muscarinic Acetylcholine Receptor, B-type, [RH, Score=244, Expect=4e-70]} {Celegans: WBGene00001518, gar-2, Probable muscarinic acetylcholine receptor gar-2, [RH, Score=196, Expect=2e-54]} {Smed: dd_Smed_v6_13962_0_1, dd_Smed_v6_13962_0_1, [Score=321, Expect=4e-101]} {RNA1310_12338} {RNA815_52171}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA