TomoSeq data search

Data search

Results for MligTC455_24194

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_24194

11878

247.46

Mlig455_012113

Neo: Int S/G2/M

Age: Down-Down-Up, logFC(26M/2M)=0.220

RPL8

Mlig455_012113 {REF} {Length: 944} {TRANSSPLICED} {Pfam: Ribosomal Proteins L2, C-terminal domain [PF03947.20, score=154.7]; Ribosomal Proteins L2, RNA binding domain [PF00181.25, score=60.1]} {Human: ENSG00000161016, RPL8, ribosomal protein L8, [RH, Score=414, Expect=7e-148]} {Mouse: ENSMUSG00000003970, Rpl8, ribosomal protein L8, [RH, Score=414, Expect=5e-148]} {Dmel: FBgn0261602, RpL8, Ribosomal protein L8, [RH, Score=410, Expect=1e-146]} {Celegans: WBGene00004413, rpl-2, 60S ribosomal protein L8, [RH, Score=395, Expect=1e-140]} {Smed: dd_Smed_v6_108_0_1, dd_Smed_v6_108_0_1, [RH, Score=399, Expect=2e-142]} {RNA1509_11382, RNA1509_1903, RNA1509_5112, RNA1509_7259} {RNA1310_38364.1, RNA1509_11382, RNA1509_1903, RNA1509_5112, RNA1509_7259} {RNA1509_11382, RNA1509_1903, RNA1509_5112, RNA1509_7259, RNA815_9295.2}

Cumulative graph for MligTC455_24194

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.963	8.06	0.01094	0.30492
RegionR2	-0.114	8.06	0.68404	1.00000
RegionR3	0.308	8.06	0.20306	0.74332
RegionR4	-0.153	8.06	0.57371	0.89158
RegionR5	0.303	8.06	0.19359	0.47907
RegionR6	0.192	8.06	0.42764	0.99246
RegionR7	0.601	8.06	0.00920	0.16286
RegionR8	-0.174	8.06	0.51933	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-1.572	8.06	0.00447	0.33828
RegenerationR2	-0.458	8.06	0.14011	0.56932
RegenerationR3	-0.464	8.06	0.13849	0.56438
RegenerationR4	-0.399	8.06	0.21542	0.66252
RegenerationR5	-0.84	8.06	0.00696	0.15236
RegenerationR6	-0.537	8.06	0.08831	0.37121
RegenerationBL	-0.607	8.06	0.03177	0.19959
RegenerationTP	-0.858	8.06	0.00478	0.11479

Genes with expression patterns similar to MligTC455_24194

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_24194	11878	247.46	Mlig455_012113	Neo: Int S/G2/M Age: Down-Down-Up, logFC(26M/2M)=0.220	RPL8	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_012113 {REF} {Length: 944} {TRANSSPLICED} {Pfam: Ribosomal Proteins L2, C-terminal domain [PF03947.20, score=154.7]; Ribosomal Proteins L2, RNA binding domain [PF00181.25, score=60.1]} {Human: ENSG00000161016, RPL8, ribosomal protein L8, [RH, Score=414, Expect=7e-148]} {Mouse: ENSMUSG00000003970, Rpl8, ribosomal protein L8, [RH, Score=414, Expect=5e-148]} {Dmel: FBgn0261602, RpL8, Ribosomal protein L8, [RH, Score=410, Expect=1e-146]} {Celegans: WBGene00004413, rpl-2, 60S ribosomal protein L8, [RH, Score=395, Expect=1e-140]} {Smed: dd_Smed_v6_108_0_1, dd_Smed_v6_108_0_1, [RH, Score=399, Expect=2e-142]} {RNA1509_11382, RNA1509_1903, RNA1509_5112, RNA1509_7259} {RNA1310_38364.1, RNA1509_11382, RNA1509_1903, RNA1509_5112, RNA1509_7259} {RNA1509_11382, RNA1509_1903, RNA1509_5112, RNA1509_7259, RNA815_9295.2}
2.	MligTC455_14037	395	8.23	Mlig455_017786	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.398		1.763	-	-	-	0.963	0.800	-	Mlig455_017786 {REF} {Length: 2009} {RNA1509_21826, RNA1509_33444, RNA1509_36272} {RNA1310_15485.1, RNA1509_21826, RNA1509_33444, RNA1509_36272} {RNA1509_21826, RNA1509_33444, RNA1509_36272, RNA815_5282}
3.	MligTC455_47785	811	16.9	Mlig455_010448	Neo: Int S/G2/M Age: - Region-enriched R4: 1.674/0.04332	SMG6	0.963	-	-	-	-	0.963	-	Mlig455_010448 {REF} {Length: 4253} {TRANSSPLICED} {Pfam: Est1 DNA/RNA binding domain [PF10373.11, score=127.8]; PIN domain [PF13638.8, score=69.9]} {Human: ENSG00000070366, SMG6, SMG6, nonsense mediated mRNA decay factor, [RH, Score=439, Expect=3e-131]} {Mouse: ENSMUSG00000038290, Smg6, Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans), [RH, Score=437, Expect=2e-130]} {Dmel: FBgn0039260, Smg6, [RH, Score=156, Expect=3e-38]} {Smed: dd_Smed_v6_10632_0_1, dd_Smed_v6_10632_0_1, [RH, Score=419, Expect=5e-125]} {RNA1509_6419} {RNA1310_1957, RNA1509_6419} {RNA1509_6419, RNA815_10293}
4.	MligTC455_50858	587	12.23	Mlig455_007072	Neo: - Age: logFC(26M/2M)=-0.726	EIF5	0.958	-	-	-	-	0.958	-	Mlig455_007072 {REF} {Length: 2213} {TRANSSPLICED} {Pfam: Domain found in IF2B/IF5 [PF01873.19, score=128.6]; eIF4-gamma/eIF5/eIF2-epsilon [PF02020.20, score=61.2]} {Human: ENSG00000100664, EIF5, eukaryotic translation initiation factor 5, [Score=286, Expect=2e-91]} {Mouse: ENSMUSG00000021282, Eif5, eukaryotic translation initiation factor 5, [RH, Score=211, Expect=2e-63]} {Dmel: FBgn0030719, eIF5, eukaryotic translation initiation factor 5, [Score=288, Expect=4e-92]} {Celegans: WBGene00016496, C37C3.2, Eukaryotic translation initiation factor 5, [RH, Score=276, Expect=3e-88]} {Smed: dd_Smed_v6_2267_0_1, dd_Smed_v6_2267_0_1, [RH, Score=194, Expect=8e-58]} {RNA1509_2860} {RNA1310_1097.1} {RNA815_11901.1}
5.	MligTC455_47102	1274	26.54	Mlig455_038235, Mlig455_038308	Neo: - Age: -	WBP11	0.953	-	-	-	-	0.953	-	Mlig455_038235 {REF} {Length: 1537} {TRANSSPLICED} {Pfam: WW domain binding protein 11 [PF09429.12, score=67.1]} {Human: ENSG00000084463, WBP11, WW domain binding protein 11, [RH, Score=153, Expect=5e-40]} {Mouse: ENSMUSG00000030216, Wbp11, WW domain binding protein 11, [RH, Score=153, Expect=3e-40]} {Dmel: FBgn0024998, CG2685, [RH, Score=128, Expect=6e-32]} {Smed: dd_Smed_v6_5026_0_1, dd_Smed_v6_5026_0_1, [RH, Score=218, Expect=3e-66]} {RNA1509_12848, RNA1509_59072} {RNA1310_37508, RNA1509_12848, RNA1509_59072} {RNA1509_12848, RNA1509_59072, RNA815_29399.1} Mlig455_038308 {REF} {Length: 2376} {Pfam: WW domain binding protein 11 [PF09429.12, score=67.1]} {Human: ENSG00000084463, WBP11, WW domain binding protein 11, [RH, Score=153, Expect=5e-40]} {Mouse: ENSMUSG00000030216, Wbp11, WW domain binding protein 11, [RH, Score=153, Expect=3e-40]} {Dmel: FBgn0024998, CG2685, [RH, Score=128, Expect=6e-32]} {Smed: dd_Smed_v6_5026_0_1, dd_Smed_v6_5026_0_1, [RH, Score=218, Expect=3e-66]} {RNA1509_12848, RNA1509_35978} {RNA1310_37508, RNA1509_35978} {RNA1509_35978, RNA815_29399.1}
6.	MligTC455_48976	3958	82.46	Mlig455_004420	Neo: - Age: - Region-enriched R5: 1.033/0.00324 Region-enriched R4: 1.008/0.02346	SNRPF	0.95	-	-	-	-	-	0.950	Mlig455_004420 {REF} {Length: 622} {TRANSSPLICED} {Pfam: LSM domain [PF01423.24, score=76.3]; Ataxin 2 SM domain [PF14438.8, score=19.3]} {Human: ENSG00000139343, SNRPF, small nuclear ribonucleoprotein polypeptide F, [Score=123, Expect=5e-38]} {Mouse: ENSMUSG00000020018, Snrpf, small nuclear ribonucleoprotein polypeptide F, [Score=123, Expect=4e-38]} {Dmel: FBgn0000426, SmF, Small ribonucleoprotein particle protein SmF, [RH, Score=123, Expect=3e-38]} {Celegans: WBGene00004918, snr-5, Probable small nuclear ribonucleoprotein F, [RH, Score=123, Expect=2e-38]} {Smed: dd_Smed_v6_1056_0_1, dd_Smed_v6_1056_0_1, [Score=135, Expect=4e-43]} {RNA1509_17054, RNA1509_36621} {RNA1310_37237.1, RNA1509_17054, RNA1509_36621} {RNA1509_17054, RNA1509_36621, RNA815_25270.1}
7.	MligTC455_50401	469	9.78	Mlig455_015579	Neo: - Age: logFC(26M/2M)=0.546 Region-enriched R5: 1.771/0.02463	SLC36A1	0.95	-	-	-	-	0.950	-	Mlig455_015579 {REF} {Length: 4299} {TRANSSPLICED} {Pfam: Transmembrane amino acid transporter protein [PF01490.20, score=224.6]; Pex2 / Pex12 amino terminal region [PF04757.16, score=65.7]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=34.8]; Ring finger domain [PF13639.8, score=27.5]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=22.7]} {Human: ENSG00000123643, SLC36A1, solute carrier family 36 member 1, [RH, Score=269, Expect=1e-80]; ENSG00000180773, SLC36A4, solute carrier family 36 member 4, [RH, Score=267, Expect=2e-79]; ENSG00000186335, SLC36A2, solute carrier family 36 member 2, [RH, Score=257, Expect=4e-76]} {Mouse: ENSMUSG00000043885, Slc36a4, solute carrier family 36 (proton/amino acid symporter), member 4, [RH, Score=267, Expect=1e-79]; ENSMUSG00000020264, Slc36a2, solute carrier family 36 (proton/amino acid symporter), member 2, [RH, Score=256, Expect=8e-76]} {Dmel: FBgn0032036, CG13384, [RH, Score=287, Expect=2e-87]} {Celegans: WBGene00012804, Y43F4B.7, [Score=203, Expect=4e-57]} {Smed: dd_Smed_v6_2596_0_1, dd_Smed_v6_2596_0_1, [RH, Score=174, Expect=5e-49]} {RNA1509_7502} {RNA1310_14780.1} {RNA815_6885}
8.	MligTC455_51402	411	8.56	Mlig455_004611	Neo: - Age: -	PRPF6	0.95	-	-	-	-	0.950	-	Mlig455_004611 {REF} {Length: 3057} {TRANSSPLICED} {Pfam: PRP1 splicing factor, N-terminal [PF06424.14, score=183.9]; Tetratricopeptide repeat [PF13428.8, score=114.2]; Tetratricopeptide repeat [PF14559.8, score=63.1]; Tetratricopeptide repeat [PF07719.19, score=59.2]; Tetratricopeptide repeat [PF13181.8, score=47.5]; Tetratricopeptide repeat [PF13432.8, score=46.9]; Tetratricopeptide repeat [PF13431.8, score=38.7]; FAT domain [PF02259.25, score=33.9]; TPR repeat [PF13414.8, score=26.2]; Tetratricopeptide repeat [PF00515.30, score=26.0]; Tetratricopeptide repeat [PF13371.8, score=20.1]} {Human: ENSG00000101161, PRPF6, pre-mRNA processing factor 6, [RH, Score=1218, Expect=0.0]} {Mouse: ENSMUSG00000002455, Prpf6, pre-mRNA splicing factor 6, [RH, Score=1224, Expect=0.0]} {Dmel: FBgn0036828, CG6841, [RH, Score=1187, Expect=0.0]} {Celegans: WBGene00013343, prp-6, Yeast PRP (Splicing factor) related, [RH, Score=1029, Expect=0.0]} {Smed: dd_Smed_v6_1153_0_1, dd_Smed_v6_1153_0_1, [RH, Score=979, Expect=0.0]} {RNA1509_2962} {RNA1310_1406.1, RNA1509_2962} {RNA1509_2962, RNA815_394.1}

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