M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_25069

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_25069 145 3.01 Mlig455_003062

Neo: -

Age: Up-Down-Down

 DDX11 Mlig455_003062 {REF} {Length: 3996} {Pfam: Helicase C-terminal domain [PF13307.8, score=176.5]; DEAD_2 [PF06733.17, score=134.1]; Type III restriction enzyme, res subunit [PF04851.17, score=20.5]} {Human: ENSG00000013573, DDX11, DEAD/H-box helicase 11, [Score=305, Expect=3e-88]} {Mouse: ENSMUSG00000035842, Ddx11, DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11, [Score=312, Expect=8e-91]} {Dmel: FBgn0026876, CG11403, [RH, Score=253, Expect=3e-70]} {Celegans: WBGene00010839, chl-1, ATP-dependent DNA helicase chl-1, [Score=241, Expect=2e-66]} {Smed: dd_Smed_v6_19858_0_1, dd_Smed_v6_19858_0_1, [RH, Score=231, Expect=2e-64]} {RNA1509_47246} {RNA1310_4495} {RNA815_4148}

Cumulative graph for MligTC455_25069

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.656 2.392 0.69937 1.00000
RegionR2 1.097 2.392 0.15052 0.48448
RegionR3 -0.21 2.392 0.71496 1.00000
RegionR4 -0.099 2.392 0.87777 1.00000
RegionR5 0.257 2.392 0.59966 0.95708
RegionR6 -0.769 2.392 0.24128 0.82632
RegionR7 0.64 2.392 0.41401 1.00000
RegionR8 -0.259 2.392 0.82658 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -3.682 2.392 0.55544 1.00000
RegenerationR2 -1.04 2.392 0.12191 0.54185
RegenerationR3 0.6 2.392 0.37184 0.78483
RegenerationR4 -0.345 2.392 0.61634 0.91952
RegenerationR5 0.4 2.392 0.44342 0.82694
RegenerationR6 1.306 2.392 0.08444 0.36354
RegenerationBL -0.814 2.392 0.54613 0.90327
RegenerationTP -0.804 2.392 0.50471 0.90335


Genes with expression patterns similar to MligTC455_25069

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_25069 145 3.01 Mlig455_003062

Neo: -

Age: Up-Down-Down

 DDX11 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_003062 {REF} {Length: 3996} {Pfam: Helicase C-terminal domain [PF13307.8, score=176.5]; DEAD_2 [PF06733.17, score=134.1]; Type III restriction enzyme, res subunit [PF04851.17, score=20.5]} {Human: ENSG00000013573, DDX11, DEAD/H-box helicase 11, [Score=305, Expect=3e-88]} {Mouse: ENSMUSG00000035842, Ddx11, DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11, [Score=312, Expect=8e-91]} {Dmel: FBgn0026876, CG11403, [RH, Score=253, Expect=3e-70]} {Celegans: WBGene00010839, chl-1, ATP-dependent DNA helicase chl-1, [Score=241, Expect=2e-66]} {Smed: dd_Smed_v6_19858_0_1, dd_Smed_v6_19858_0_1, [RH, Score=231, Expect=2e-64]} {RNA1509_47246} {RNA1310_4495} {RNA815_4148}
2. MligTC455_25070 294 6.12 Mlig455_003268, Mlig455_062829

Neo: -

Age: -

 DDX11 3.756 0.994 0.975 0.921 0.866 - -

Mlig455_003268 {REF} {Length: 4699} {TRANSSPLICED} {Pfam: Helicase C-terminal domain [PF13307.8, score=175.6]; Ku70/Ku80 beta-barrel domain [PF02735.18, score=161.6]; DEAD_2 [PF06733.17, score=132.8]; Ku70/Ku80 N-terminal alpha/beta domain [PF03731.17, score=87.0]; Ku70/Ku80 C-terminal arm [PF03730.16, score=25.3]} {Human: ENSG00000013573, DDX11, DEAD/H-box helicase 11, [RH, Score=459, Expect=4e-143]} {Mouse: ENSMUSG00000035842, Ddx11, DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11, [Score=475, Expect=4e-149]} {Dmel: FBgn0026876, CG11403, [RH, Score=250, Expect=5e-69]} {Celegans: WBGene00010839, chl-1, ATP-dependent DNA helicase chl-1, [Score=377, Expect=6e-114]} {Smed: dd_Smed_v6_19858_0_2, dd_Smed_v6_19858_0_2, [Score=365, Expect=1e-109]} {RNA1509_4805} {RNA1310_12398.1} {RNA815_4398}

Mlig455_062829 {REF} {Length: 4704} {TRANSSPLICED} {Pfam: Helicase C-terminal domain [PF13307.8, score=176.2]; Ku70/Ku80 beta-barrel domain [PF02735.18, score=161.6]; DEAD_2 [PF06733.17, score=133.8]; Ku70/Ku80 N-terminal alpha/beta domain [PF03731.17, score=87.0]; Ku70/Ku80 C-terminal arm [PF03730.16, score=29.3]} {Human: ENSG00000013573, DDX11, DEAD/H-box helicase 11, [RH, Score=456, Expect=2e-142]} {Mouse: ENSMUSG00000035842, Ddx11, DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11, [Score=474, Expect=9e-149]} {Dmel: FBgn0026876, CG11403, [RH, Score=252, Expect=1e-69]} {Celegans: WBGene00010839, chl-1, ATP-dependent DNA helicase chl-1, [Score=372, Expect=3e-112]} {Smed: dd_Smed_v6_19858_0_2, dd_Smed_v6_19858_0_2, [Score=367, Expect=2e-110]} {RNA1509_4805} {RNA1310_12398.1} {RNA815_4398}
3. MligTC455_48222 885 18.44 Mlig455_031424, Mlig455_056469

Neo: -

Age: Down-Up-Up

 GFER 2.446 0.739 - - - 0.953 0.754

Mlig455_031424 {REF} {Length: 1606} {TRANSSPLICED} {Pfam: Erv1 / Alr family [PF04777.15, score=104.4]} {Human: ENSG00000127554, GFER, growth factor, augmenter of liver regeneration, [RH, Score=147, Expect=2e-44]} {Mouse: ENSMUSG00000040888, Gfer, growth factor, augmenter of liver regeneration, [RH, Score=139, Expect=2e-41]} {Dmel: FBgn0031068, Alr, Augmenter of liver regeneration, [RH, Score=134, Expect=6e-39]} {Celegans: WBGene00018955, F56C11.3, Sulfhydryl oxidase, [RH, Score=140, Expect=1e-42]} {Smed: dd_Smed_v6_9440_0_1, dd_Smed_v6_9440_0_1, [RH, Score=160, Expect=8e-51]} {RNA1509_41230} {RNA1310_32417.1} {RNA815_24929}

Mlig455_056469 {REF} {Length: 1066} {TRANSSPLICED} {Pfam: Erv1 / Alr family [PF04777.15, score=104.3]} {Human: ENSG00000127554, GFER, growth factor, augmenter of liver regeneration, [RH, Score=149, Expect=5e-45]} {Mouse: ENSMUSG00000040888, Gfer, growth factor, augmenter of liver regeneration, [RH, Score=139, Expect=2e-41]} {Dmel: FBgn0031068, Alr, Augmenter of liver regeneration, [RH, Score=132, Expect=5e-38]} {Celegans: WBGene00018955, F56C11.3, Sulfhydryl oxidase, [RH, Score=140, Expect=2e-42]} {Smed: dd_Smed_v6_9440_0_1, dd_Smed_v6_9440_0_1, [RH, Score=161, Expect=6e-51]} {RNA1509_19287, RNA1509_41230} {RNA1310_32417.1, RNA1509_19287, RNA1509_41230} {RNA1509_19287, RNA1509_41230, RNA815_24929}
4. MligTC455_44730 249 5.19 Mlig455_056276

Neo: Int S/G2/M

Age: -

 CLCN3 0.97 - - - - - 0.970 Mlig455_056276 {REF} {Length: 9368} {TRANSSPLICED} {Pfam: Voltage gated chloride channel [PF00654.22, score=316.6]; Tetratricopeptide repeat [PF07719.19, score=27.2]; CBS domain [PF00571.30, score=23.2]; Tetratricopeptide repeat [PF00515.30, score=21.4]} {Human: ENSG00000109572, CLCN3, chloride voltage-gated channel 3, [Score=876, Expect=0.0]; ENSG00000073464, CLCN4, chloride voltage-gated channel 4, [Score=868, Expect=0.0]; ENSG00000171365, CLCN5, chloride voltage-gated channel 5, [Score=852, Expect=0.0]} {Mouse: ENSMUSG00000004319, Clcn3, chloride channel, voltage-sensitive 3, [Score=876, Expect=0.0]; ENSMUSG00000000605, Clcn4, chloride channel, voltage-sensitive 4, [Score=862, Expect=0.0]; ENSMUSG00000004317, Clcn5, chloride channel, voltage-sensitive 5, [Score=853, Expect=0.0]} {Dmel: FBgn0036566, ClC-c, Chloride channel-c, [RH, Score=868, Expect=0.0]} {Celegans: WBGene00000532, clh-5, Chloride channel protein, [RH, Score=737, Expect=0.0]} {Smed: dd_Smed_v6_4076_1_1, dd_Smed_v6_4076_1_1, [Score=781, Expect=0.0]} {RNA1509_12600, RNA1509_18041, RNA1509_30316} {RNA1310_3875, RNA1509_18041, RNA1509_30316} {RNA1509_18041, RNA1509_30316, RNA815_996.1}
5. MligTC455_42752 212 4.42 Mlig455_016044

Neo: -

Age: -

 DUS4L 0.963 - - - - 0.963 - Mlig455_016044 {REF} {Length: 3549} {Pfam: Dihydrouridine synthase (Dus) [PF01207.19, score=207.7]} {Human: ENSG00000105865, DUS4L, dihydrouridine synthase 4 like, [RH, Score=277, Expect=9e-92]; ENSG00000284103, DUS4L, dihydrouridine synthase 4 like, [RH, Score=277, Expect=9e-92]} {Mouse: ENSMUSG00000020648, Dus4l, dihydrouridine synthase 4-like (S. cerevisiae), [RH, Score=275, Expect=1e-90]} {Dmel: FBgn0032750, CG10495, [RH, Score=238, Expect=9e-76]} {Celegans: WBGene00016674, C45G9.2, Uncharacterized tRNA-dihydrouridine synthase-like protein C45G9.2, [RH, Score=213, Expect=2e-67]} {Smed: dd_Smed_v6_9471_0_1, dd_Smed_v6_9471_0_1, [RH, Score=281, Expect=9e-94]} {RNA1509_37119} {RNA1310_18470.1, RNA1509_37119} {RNA1509_37119, RNA815_611.1}
6. MligTC455_30437 35 0.72 Mlig455_057799

Neo: -

Age: -

 0.962 - - 0.962 - - - Mlig455_057799 {REF} {Length: 1000} {RNA1509_11239} {RNA1310_50394} {RNA815_2064.1}
7. MligTC455_20927 128 2.66 Mlig455_052078

Neo: -

Age: -

 0.958 - - - - - 0.958 Mlig455_052078 {REF} {Length: 666} {NoTransDecoderORF} {RNA1310_56856} {RNA815_15280}
8. MligTC455_51323 114 2.37 Mlig455_036899

Neo: -

Age: -

Region-enriched R5: 2.522/0.00479

 0.955 - - - - 0.955 - Mlig455_036899 {REF} {Length: 2524} {TRANSSPLICED} {Pfam: Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8 [PF15299.8, score=18.6]} {RNA1310_11295.1} {RNA815_14627}
9. MligTC455_13629 146 3.05 Mlig455_027157

Neo: -

Age: -

Region-enriched R4: 2.939/0.03885

 0.95 - - 0.950 - - - Mlig455_027157 {REF} {Length: 670} {NoTransDecoderORF} {RNA1509_30941} {RNA1310_56359} {RNA815_19376}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA