TomoSeq data search

Data search

Results for MligTC455_25070

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_25070	294	6.12	Mlig455_003268, Mlig455_062829	Neo: - Age: -	DDX11	Mlig455_003268 {REF} {Length: 4699} {TRANSSPLICED} {Pfam: Helicase C-terminal domain [PF13307.8, score=175.6]; Ku70/Ku80 beta-barrel domain [PF02735.18, score=161.6]; DEAD_2 [PF06733.17, score=132.8]; Ku70/Ku80 N-terminal alpha/beta domain [PF03731.17, score=87.0]; Ku70/Ku80 C-terminal arm [PF03730.16, score=25.3]} {Human: ENSG00000013573, DDX11, DEAD/H-box helicase 11, [RH, Score=459, Expect=4e-143]} {Mouse: ENSMUSG00000035842, Ddx11, DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11, [Score=475, Expect=4e-149]} {Dmel: FBgn0026876, CG11403, [RH, Score=250, Expect=5e-69]} {Celegans: WBGene00010839, chl-1, ATP-dependent DNA helicase chl-1, [Score=377, Expect=6e-114]} {Smed: dd_Smed_v6_19858_0_2, dd_Smed_v6_19858_0_2, [Score=365, Expect=1e-109]} {RNA1509_4805} {RNA1310_12398.1} {RNA815_4398} Mlig455_062829 {REF} {Length: 4704} {TRANSSPLICED} {Pfam: Helicase C-terminal domain [PF13307.8, score=176.2]; Ku70/Ku80 beta-barrel domain [PF02735.18, score=161.6]; DEAD_2 [PF06733.17, score=133.8]; Ku70/Ku80 N-terminal alpha/beta domain [PF03731.17, score=87.0]; Ku70/Ku80 C-terminal arm [PF03730.16, score=29.3]} {Human: ENSG00000013573, DDX11, DEAD/H-box helicase 11, [RH, Score=456, Expect=2e-142]} {Mouse: ENSMUSG00000035842, Ddx11, DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11, [Score=474, Expect=9e-149]} {Dmel: FBgn0026876, CG11403, [RH, Score=252, Expect=1e-69]} {Celegans: WBGene00010839, chl-1, ATP-dependent DNA helicase chl-1, [Score=372, Expect=3e-112]} {Smed: dd_Smed_v6_19858_0_2, dd_Smed_v6_19858_0_2, [Score=367, Expect=2e-110]} {RNA1509_4805} {RNA1310_12398.1} {RNA815_4398}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_25070

294

6.12

Mlig455_003268, Mlig455_062829

Neo: -

Age: -

DDX11

Mlig455_003268 {REF} {Length: 4699} {TRANSSPLICED} {Pfam: Helicase C-terminal domain [PF13307.8, score=175.6]; Ku70/Ku80 beta-barrel domain [PF02735.18, score=161.6]; DEAD_2 [PF06733.17, score=132.8]; Ku70/Ku80 N-terminal alpha/beta domain [PF03731.17, score=87.0]; Ku70/Ku80 C-terminal arm [PF03730.16, score=25.3]} {Human: ENSG00000013573, DDX11, DEAD/H-box helicase 11, [RH, Score=459, Expect=4e-143]} {Mouse: ENSMUSG00000035842, Ddx11, DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11, [Score=475, Expect=4e-149]} {Dmel: FBgn0026876, CG11403, [RH, Score=250, Expect=5e-69]} {Celegans: WBGene00010839, chl-1, ATP-dependent DNA helicase chl-1, [Score=377, Expect=6e-114]} {Smed: dd_Smed_v6_19858_0_2, dd_Smed_v6_19858_0_2, [Score=365, Expect=1e-109]} {RNA1509_4805} {RNA1310_12398.1} {RNA815_4398}

Mlig455_062829 {REF} {Length: 4704} {TRANSSPLICED} {Pfam: Helicase C-terminal domain [PF13307.8, score=176.2]; Ku70/Ku80 beta-barrel domain [PF02735.18, score=161.6]; DEAD_2 [PF06733.17, score=133.8]; Ku70/Ku80 N-terminal alpha/beta domain [PF03731.17, score=87.0]; Ku70/Ku80 C-terminal arm [PF03730.16, score=29.3]} {Human: ENSG00000013573, DDX11, DEAD/H-box helicase 11, [RH, Score=456, Expect=2e-142]} {Mouse: ENSMUSG00000035842, Ddx11, DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11, [Score=474, Expect=9e-149]} {Dmel: FBgn0026876, CG11403, [RH, Score=252, Expect=1e-69]} {Celegans: WBGene00010839, chl-1, ATP-dependent DNA helicase chl-1, [Score=372, Expect=3e-112]} {Smed: dd_Smed_v6_19858_0_2, dd_Smed_v6_19858_0_2, [Score=367, Expect=2e-110]} {RNA1509_4805} {RNA1310_12398.1} {RNA815_4398}

Cumulative graph for MligTC455_25070

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-0.111	3.178	0.93631	1.00000
RegionR2	0.731	3.178	0.24785	0.62541
RegionR3	-0.301	3.178	0.52247	1.00000
RegionR4	0.139	3.178	0.80752	1.00000
RegionR5	0.116	3.178	0.78253	1.00000
RegionR6	-0.701	3.178	0.16643	0.72172
RegionR7	0.543	3.178	0.37571	1.00000
RegionR8	-0.416	3.178	0.63155	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-5.076	3.178	0.34539	1.00000
RegenerationR2	-0.994	3.178	0.07155	0.43436
RegenerationR3	0.318	3.178	0.58268	0.89985
RegenerationR4	-0.444	3.178	0.44498	0.83933
RegenerationR5	0.098	3.178	0.83499	0.99928
RegenerationR6	0.496	3.178	0.44189	0.76548
RegenerationBL	0.774	3.178	0.30861	0.67364
RegenerationTP	-0.722	3.178	0.41974	0.84396

Genes with expression patterns similar to MligTC455_25070

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_25070	294	6.12	Mlig455_003268, Mlig455_062829	Neo: - Age: -	DDX11	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_003268 {REF} {Length: 4699} {TRANSSPLICED} {Pfam: Helicase C-terminal domain [PF13307.8, score=175.6]; Ku70/Ku80 beta-barrel domain [PF02735.18, score=161.6]; DEAD_2 [PF06733.17, score=132.8]; Ku70/Ku80 N-terminal alpha/beta domain [PF03731.17, score=87.0]; Ku70/Ku80 C-terminal arm [PF03730.16, score=25.3]} {Human: ENSG00000013573, DDX11, DEAD/H-box helicase 11, [RH, Score=459, Expect=4e-143]} {Mouse: ENSMUSG00000035842, Ddx11, DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11, [Score=475, Expect=4e-149]} {Dmel: FBgn0026876, CG11403, [RH, Score=250, Expect=5e-69]} {Celegans: WBGene00010839, chl-1, ATP-dependent DNA helicase chl-1, [Score=377, Expect=6e-114]} {Smed: dd_Smed_v6_19858_0_2, dd_Smed_v6_19858_0_2, [Score=365, Expect=1e-109]} {RNA1509_4805} {RNA1310_12398.1} {RNA815_4398} Mlig455_062829 {REF} {Length: 4704} {TRANSSPLICED} {Pfam: Helicase C-terminal domain [PF13307.8, score=176.2]; Ku70/Ku80 beta-barrel domain [PF02735.18, score=161.6]; DEAD_2 [PF06733.17, score=133.8]; Ku70/Ku80 N-terminal alpha/beta domain [PF03731.17, score=87.0]; Ku70/Ku80 C-terminal arm [PF03730.16, score=29.3]} {Human: ENSG00000013573, DDX11, DEAD/H-box helicase 11, [RH, Score=456, Expect=2e-142]} {Mouse: ENSMUSG00000035842, Ddx11, DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11, [Score=474, Expect=9e-149]} {Dmel: FBgn0026876, CG11403, [RH, Score=252, Expect=1e-69]} {Celegans: WBGene00010839, chl-1, ATP-dependent DNA helicase chl-1, [Score=372, Expect=3e-112]} {Smed: dd_Smed_v6_19858_0_2, dd_Smed_v6_19858_0_2, [Score=367, Expect=2e-110]} {RNA1509_4805} {RNA1310_12398.1} {RNA815_4398}
2.	MligTC455_25069	145	3.01	Mlig455_003062	Neo: - Age: Up-Down-Down	DDX11	3.756	0.994	0.975	0.921	0.866	-	-	Mlig455_003062 {REF} {Length: 3996} {Pfam: Helicase C-terminal domain [PF13307.8, score=176.5]; DEAD_2 [PF06733.17, score=134.1]; Type III restriction enzyme, res subunit [PF04851.17, score=20.5]} {Human: ENSG00000013573, DDX11, DEAD/H-box helicase 11, [Score=305, Expect=3e-88]} {Mouse: ENSMUSG00000035842, Ddx11, DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11, [Score=312, Expect=8e-91]} {Dmel: FBgn0026876, CG11403, [RH, Score=253, Expect=3e-70]} {Celegans: WBGene00010839, chl-1, ATP-dependent DNA helicase chl-1, [Score=241, Expect=2e-66]} {Smed: dd_Smed_v6_19858_0_1, dd_Smed_v6_19858_0_1, [RH, Score=231, Expect=2e-64]} {RNA1509_47246} {RNA1310_4495} {RNA815_4148}
3.	MligTC455_45474	281	5.86	Mlig455_045349	Neo: Int S/G2/M Age: -		0.972	-	-	-	-	-	0.972	Mlig455_045349 {REF} {Length: 3749} {TRANSSPLICED} {Pfam: Ring finger domain [PF13639.8, score=37.4]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=24.6]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=23.3]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=21.5]} {Mouse: ENSMUSG00000038611, Phrf1, PHD and ring finger domains 1, [Score=50.1, Expect=2e-06]} {RNA1509_44163} {RNA1310_8209.1, RNA1509_44163} {RNA1509_44163, RNA815_13026.1}
4.	MligTC455_43619	210	4.38	Mlig455_061148	Neo: - Age: Down-Up-Down		0.961	-	-	-	-	-	0.961	Mlig455_061148 {REF} {Length: 3167} {TRANSSPLICED} {Pfam: Putative DNA-binding domain [PF04326.16, score=39.3]} {RNA1509_22438} {RNA1310_17975.1} {RNA815_7387.1}
5.	MligTC455_17134	342	7.13	Mlig455_058833	Neo: - Age: -	USH1C	0.96	-	-	0.960	-	-	-	Mlig455_058833 {REF} {Length: 3523} {TRANSSPLICED} {Pfam: PDZ domain [PF00595.26, score=68.2]; PDZ domain [PF17820.3, score=59.5]; PDZ domain [PF13180.8, score=40.4]} {Human: ENSG00000006611, USH1C, USH1 protein network component harmonin, [RH, Score=192, Expect=3e-55]} {Mouse: ENSMUSG00000030838, Ush1c, USH1 protein network component harmonin, [RH, Score=183, Expect=4e-52]} {Dmel: FBgn0029835, CG5921, [RH, Score=119, Expect=8e-29]} {Smed: dd_Smed_v6_11951_0_1, dd_Smed_v6_11951_0_1, [Score=63.2, Expect=9e-11]} {RNA1509_13384, RNA1509_51500} {RNA1310_14486, RNA1509_13384, RNA1509_51500} {RNA1509_13384, RNA1509_51500, RNA815_2001}
6.	MligTC455_42146	360	7.51	Mlig455_047119	Neo: - Age: Up-Down-Down		0.959	-	-	-	-	-	0.959	Mlig455_047119 {REF} {Length: 2601} {NoTransDecoderORF} {RNA1509_58586} {RNA1310_47101} {RNA815_25985}
7.	MligTC455_22493	131	2.73	Mlig455_021289	Neo: - Age: Up-Down-Up	RPS6KC1	0.951	-	-	-	-	-	0.951	Mlig455_021289 {REF} {Length: 3681} {TRANSSPLICED} {Pfam: PX domain [PF00787.26, score=46.4]; MIT (microtubule interacting and transport) domain [PF04212.20, score=42.5]; Protein kinase domain [PF00069.27, score=36.3]} {Human: ENSG00000136643, RPS6KC1, ribosomal protein S6 kinase C1, [RH, Score=116, Expect=3e-26]} {Mouse: ENSMUSG00000089872, Rps6kc1, ribosomal protein S6 kinase polypeptide 1, [Score=110, Expect=4e-24]} {Dmel: FBgn0020412, JIL-1, JIL-1 kinase, [Score=86.7, Expect=5e-17]} {Celegans: WBGene00012929, rsks-1, Ribosomal protein S6 kinase beta, [Score=87.4, Expect=1e-17]} {Smed: dd_Smed_v6_4316_0_1, dd_Smed_v6_4316_0_1, [Score=89.0, Expect=5e-18]} {RNA1509_16878} {RNA1310_6753.1} {RNA815_10519}