M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_27859

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_27859 118 2.45 Mlig455_066646

Neo: -

Age: Up-Down-Up

 NUDCD1 Mlig455_066646 {REF} {Length: 4075} {TRANSSPLICED} {Pfam: CS domain [PF04969.18, score=25.8]} {Human: ENSG00000120526, NUDCD1, NudC domain containing 1, [Score=166, Expect=1e-44]} {Mouse: ENSMUSG00000038736, Nudcd1, NudC domain containing 1, [Score=157, Expect=8e-42]} {Dmel: FBgn0030342, CG10347, [Score=61.6, Expect=7e-10]} {RNA1509_9333} {RNA1310_9303.1} {RNA815_4347}

Cumulative graph for MligTC455_27859

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.242 2.041 0.99971 1.00000
RegionR2 1.894 2.041 0.24931 0.62730
RegionR3 1.287 2.041 0.41455 0.93965
RegionR4 2.103 2.041 0.13674 0.37620
RegionR5 1.105 2.041 0.44644 0.80784
RegionR6 -1.473 2.041 0.99127 1.00000
RegionR7 -1.464 2.041 0.98852 1.00000
RegionR8 -1.21 2.041 0.99983 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.318 2.041 0.79155 1.00000
RegenerationR2 1.974 2.041 0.04418 0.34735
RegenerationR3 1.568 2.041 0.22494 0.66022
RegenerationR4 0.752 2.041 0.51689 0.87836
RegenerationR5 1.76 2.041 0.13996 0.55259
RegenerationR6 3.975 2.041 0.02607 0.20206
RegenerationBL 4.116 2.041 0.03208 0.20070
RegenerationTP 5.07 2.041 0.02721 0.27798


Genes with expression patterns similar to MligTC455_27859

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_27859 118 2.45 Mlig455_066646

Neo: -

Age: Up-Down-Up

 NUDCD1 4 - - 1.000 1.000 1.000 1.000 Mlig455_066646 {REF} {Length: 4075} {TRANSSPLICED} {Pfam: CS domain [PF04969.18, score=25.8]} {Human: ENSG00000120526, NUDCD1, NudC domain containing 1, [Score=166, Expect=1e-44]} {Mouse: ENSMUSG00000038736, Nudcd1, NudC domain containing 1, [Score=157, Expect=8e-42]} {Dmel: FBgn0030342, CG10347, [Score=61.6, Expect=7e-10]} {RNA1509_9333} {RNA1310_9303.1} {RNA815_4347}
2. MligTC455_37629 75 1.56 Mlig455_051157

Neo: -

Age: -

 2.777 - - 0.913 - 0.964 0.900 Mlig455_051157 {REF} {Length: 1499} {Pfam: Integrase core domain [PF00665.28, score=31.3]} {Smed: dd_Smed_v6_11155_0_2, dd_Smed_v6_11155_0_2, [Score=55.8, Expect=8e-10]} {RNA1509_21400} {RNA1310_576.1} {RNA815_2733.1}
3. MligTC455_28754 101 2.11 Mlig455_007328

Neo: -

Age: -

 2.758 - - 0.938 - 0.847 0.973 Mlig455_007328 {REF} {Length: 4271} {Pfam: Protein of unknown function (DUF1104) [PF06518.13, score=22.6]} {RNA1509_29114} {RNA1310_11511, RNA1509_29114} {RNA1509_29114, RNA815_1857}
4. MligTC455_37509 85 1.77 Mlig455_048299

Neo: -

Age: -

Region-enriched R2: 5.741/0.03019

 SALL4 2.67 - - - 0.909 0.969 0.792 Mlig455_048299 {REF} {Length: 1020} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=33.5]; C2H2-type zinc finger [PF13894.8, score=31.4]; Zinc-finger of C2H2 type [PF12874.9, score=30.1]; Zinc-finger double domain [PF13465.8, score=26.1]} {Human: ENSG00000101115, SALL4, spalt like transcription factor 4, [Score=80.9, Expect=6e-17]; ENSG00000256463, SALL3, spalt like transcription factor 3, [Score=79.0, Expect=3e-16]; ENSG00000277015, SALL3, spalt like transcription factor 3, [Score=79.0, Expect=3e-16]; ENSG00000263310, SALL3, spalt like transcription factor 3, [Score=78.6, Expect=4e-16]; ENSG00000103449, SALL1, spalt like transcription factor 1, [Score=78.2, Expect=7e-16]} {Mouse: ENSMUSG00000027547, Sall4, spalt like transcription factor 4, [Score=80.9, Expect=5e-17]; ENSMUSG00000024565, Sall3, spalt like transcription factor 3, [Score=79.0, Expect=2e-16]; ENSMUSG00000031665, Sall1, spalt like transcription factor 1, [Score=77.8, Expect=6e-16]} {Dmel: FBgn0261648, salm, spalt major, [Score=80.5, Expect=4e-17]} {Celegans: WBGene00004773, sem-4, SEM-4 long form, [Score=81.3, Expect=2e-17]} {Smed: dd_Smed_v6_14176_0_1, dd_Smed_v6_14176_0_1, [Score=94.7, Expect=3e-22]} {RNA1509_34185} {RNA1310_7579} {RNA815_11290}
5. MligTC455_27816 81 1.68 Mlig455_008411

Neo: -

Age: -

 2.592 - - 0.782 - 0.842 0.968 Mlig455_008411 {REF} {Length: 3143} {TRANSSPLICED} {Pfam: Protein of unknown function (DUF1759) [PF03564.17, score=22.1]; Zinc knuckle [PF00098.25, score=21.7]} {RNA1509_24163} {RNA1310_131.1} {RNA815_52.1}
6. MligTC455_31866 621 12.93 Mlig455_023217, Mlig455_045753

Neo: -

Age: logFC(26M/2M)=0.454

Region-enriched R4: 4.034/0.04838

Regeneration-upregulated BL: 5.711

Regeneration-enriched BL: 5.711

 2.581 - - 0.790 - 0.816 0.975

Mlig455_023217 {REF} {Length: 4980} {Pfam: Bacterial transferase hexapeptide (six repeats) [PF00132.26, score=31.5]} {RNA1509_12420} {RNA1310_5450.1} {RNA815_7136.1}

Mlig455_045753 {REF} {Length: 5962} {Pfam: Lectin C-type domain [PF00059.23, score=30.9]} {Smed: dd_Smed_v6_32483_0_1, dd_Smed_v6_32483_0_1, [Score=58.5, Expect=3e-10]} {RNA1509_22651, RNA1509_44006} {RNA1310_622.1, RNA1509_44006} {RNA1509_44006, RNA815_2514.1}
7. MligTC455_31865 130 2.71 Mlig455_007329

Neo: -

Age: Up-Down-Down

 2.544 - - 0.786 - 0.808 0.950 Mlig455_007329 {REF} {Length: 3948} {Pfam: Chorion protein [PF01723.18, score=21.5]} {RNA1509_44743} {RNA1310_5450.1} {RNA815_7717.1}
8. MligTC455_11497 60 1.24 Mlig455_038567

Neo: -

Age: -

 2.495 - - 0.760 - 0.967 0.768 Mlig455_038567 {REF} {Length: 443} {NoTransDecoderORF} {RNA1509_51837} {RNA1310_23145} {RNA815_41033.2}
9. MligTC455_29932 1986 41.38 Mlig455_001199, Mlig455_005142, Mlig455_020531, Mlig455_026534, Mlig455_026702, Mlig455_030169, Mlig455_032446, Mlig455_042854, Mlig455_049560, Mlig455_060694, Mlig455_069001, Mlig455_070764

Neo: -

Age: Up-Down-Up

Region-enriched R7: 2.070/0.01902

 2.477 - - - 0.738 0.978 0.761

Mlig455_001199 {REF} {Length: 3263} {tRNA: Val(CAC),pseudo, score=24.9} {RNA1509_18349} {RNA1310_29429.1} {RNA815_17990}

Mlig455_005142 {REF} {Length: 6998} {tRNA: Val(CAC),pseudo, score=24.9} {RNA1509_20096} {RNA1310_576.1} {RNA815_2733.1}

Mlig455_020531 {REF} {Length: 5762} {tRNA: Val(CAC),pseudo, score=24.9} {RNA1509_21400} {RNA1310_576.1} {RNA815_2733.1}

Mlig455_026534 {REF} {Length: 1135} {Pfam: Integrase core domain [PF00665.28, score=28.1]} {Smed: dd_Smed_v6_11155_0_2, dd_Smed_v6_11155_0_2, [Score=59.3, Expect=8e-11]} {RNA1509_21400} {RNA1310_576.1} {RNA815_2733.1}

Mlig455_026702 {REF} {Length: 2050} {tRNA: Val(CAC),pseudo, score=24.9} {RNA1509_18349} {RNA1310_29429.1} {RNA815_17990}

Mlig455_030169 {REF} {Length: 853} {Pfam: Integrase core domain [PF00665.28, score=27.1]} {Smed: dd_Smed_v6_11155_0_1, dd_Smed_v6_11155_0_1, [Score=45.4, Expect=4e-06]} {RNA1509_21400} {RNA1310_576.1} {RNA815_2733.1}

Mlig455_032446 {REF} {Length: 1256} {NoTransDecoderORF} {tRNA: Val(CAC),pseudo, score=24.9} {RNA1509_18349} {RNA1310_73557} {RNA815_16852}

Mlig455_042854 {REF} {Length: 957} {NoTransDecoderORF} {tRNA: Val(CAC),pseudo, score=28.6} {RNA1509_18349} {RNA1310_73557} {RNA815_16852}

Mlig455_049560 {REF} {Length: 564} {Pfam: Integrase core domain [PF00665.28, score=28.3]} {Smed: dd_Smed_v6_11155_0_1, dd_Smed_v6_11155_0_1, [Score=59.3, Expect=7e-11]} {RNA1509_21400} {RNA1310_576.1} {RNA815_2733.1}

Mlig455_060694 {REF} {Length: 1136} {Pfam: Integrase core domain [PF00665.28, score=28.5]} {Smed: dd_Smed_v6_11155_0_2, dd_Smed_v6_11155_0_2, [Score=59.3, Expect=7e-11]} {RNA1509_21400} {RNA1310_576.1} {RNA815_2733.1}

Mlig455_069001 {REF} {Length: 997} {Pfam: Integrase core domain [PF00665.28, score=28.3]} {Smed: dd_Smed_v6_11155_0_1, dd_Smed_v6_11155_0_1, [Score=59.3, Expect=7e-11]} {RNA1509_21400} {RNA1310_576.1} {RNA815_2733.1}

Mlig455_070764 {REF} {Length: 1137} {Pfam: Integrase core domain [PF00665.28, score=28.3]} {Smed: dd_Smed_v6_11155_0_1, dd_Smed_v6_11155_0_1, [Score=59.3, Expect=7e-11]} {RNA1509_21400} {RNA1310_576.1} {RNA815_2733.1}
10. MligTC455_29260 139 2.9 Mlig455_017645

Neo: -

Age: logFC(26M/2M)=0.941

 1.903 - - - - 0.958 0.945 Mlig455_017645 {REF} {Length: 9122} {Pfam: Zinc knuckle [PF00098.25, score=34.2]} {Celegans: WBGene00017210, F07E5.5, [Score=53.5, Expect=3e-07]} {RNA1509_9188} {RNA1310_234.1} {RNA815_23.1}
11. MligTC455_29628 238 4.96 Mlig455_024037

Neo: -

Age: -

 1.863 - - - - 0.952 0.911 Mlig455_024037 {REF} {Length: 6871} {Celegans: WBGene00019192, H12I13.3, [Score=142, Expect=3e-39]} {Smed: dd_Smed_v6_9974_1_2, dd_Smed_v6_9974_1_2, [Score=115, Expect=2e-29]} {RNA1509_28643, RNA1509_8360} {RNA1310_576.1, RNA1509_28643, RNA1509_8360} {RNA1509_28643, RNA1509_8360, RNA815_1671.1}
12. MligTC455_10250 69 1.43 Mlig455_020228

Neo: -

Age: -

 1.856 - - 0.976 - - 0.880 Mlig455_020228 {REF} {Length: 946} {RNA1509_44223} {RNA1310_54802} {RNA815_64986}
13. MligTC455_15889 141 2.94 Mlig455_015213, Mlig455_027172

Neo: -

Age: -

 1.838 - - - - 0.875 0.963

Mlig455_015213 {REF} {Length: 700} {NoTransDecoderORF}

Mlig455_027172 {REF} {Length: 1153} {NoTransDecoderORF} {RNA1509_14015} {RNA1310_27437} {RNA815_11483.1}
14. MligTC455_26689 104 2.16 Mlig455_053175

Neo: -

Age: -

 PIF1 1.838 - - - - 0.951 0.887 Mlig455_053175 {REF} {Length: 5153} {Pfam: PIF1-like helicase [PF05970.16, score=23.2]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=57.8, Expect=4e-08]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=73.6, Expect=2e-13]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=59.3, Expect=3e-09]} {RNA1509_56606} {RNA1310_6101.1} {RNA815_2733.1}
15. MligTC455_13875 92 1.92 Mlig455_025418

Neo: -

Age: -

 1.833 - - - - 0.988 0.845 Mlig455_025418 {REF} {Length: 631} {NoTransDecoderORF}
16. MligTC455_27838 246 5.12 Mlig455_060678

Neo: -

Age: Down-Down-Down

Regeneration-upregulated TP: 4.727

Regeneration-enriched TP: 4.727

 TRPM1 1.825 - - - - 0.870 0.955 Mlig455_060678 {REF} {Length: 14356} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=81.6]; Ankyrin repeats (3 copies) [PF12796.9, score=80.1]; Ankyrin repeats (many copies) [PF13857.8, score=39.8]; Ankyrin repeat [PF13606.8, score=39.5]; Ankyrin repeat [PF00023.32, score=34.0]} {Human: ENSG00000274965, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=56.2, Expect=6e-07]; ENSG00000134160, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=56.2, Expect=5e-07]} {Mouse: ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=56.2, Expect=4e-07]; ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=54.3, Expect=1e-06]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=55.8, Expect=4e-07]} {Celegans: WBGene00006616, trp-4, TRP (Transient receptor potential) channel family, [Score=58.2, Expect=6e-08]} {Smed: dd_Smed_v6_26251_0_1, dd_Smed_v6_26251_0_1, [Score=97.1, Expect=4e-20]} {RNA1509_29189} {RNA1310_131.1} {RNA815_52.1}
17. MligTC455_27841 1118 23.3 Mlig455_021442, Mlig455_037900

Neo: -

Age: -

Regeneration-upregulated BL: 4.099

Regeneration-enriched BL: 4.099

 1.808 - - - - 0.843 0.965

Mlig455_021442 {REF} {Length: 2929} {TRANSSPLICED} {Pfam: Zinc knuckle [PF00098.25, score=21.6]} {RNA1509_24163} {RNA1310_131.1} {RNA815_52.1}

Mlig455_037900 {REF} {Length: 3423} {Pfam: Zinc knuckle [PF00098.25, score=20.8]} {RNA1509_24163} {RNA1310_131.1} {RNA815_52.1}
18. MligTC455_42237 305 6.36 Mlig455_000708

Neo: -

Age: -

 MOB2 1.796 - - - 0.846 0.950 - Mlig455_000708 {REF} {Length: 2233} {TRANSSPLICED} {Pfam: Mob1/phocein family [PF03637.19, score=96.3]} {Human: ENSG00000182208, MOB2, MOB kinase activator 2, [Score=107, Expect=3e-28]} {Mouse: ENSMUSG00000025147, Mob2, MOB kinase activator 2, [Score=117, Expect=5e-32]} {Dmel: FBgn0259481, Mob2, [Score=117, Expect=1e-30]} {Smed: dd_Smed_v6_13787_0_1, dd_Smed_v6_13787_0_1, [RH, Score=134, Expect=2e-38]} {RNA1509_19308, RNA1509_22987} {RNA1310_9275.1, RNA1509_19308, RNA1509_22987} {RNA1509_19308, RNA1509_22987, RNA815_3046.1}
19. MligTC455_29058 508 10.59 Mlig455_061705

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=2.220

Region-enriched R2: 1.827/0.04316

 1.774 - - 0.815 - - 0.959 Mlig455_061705 {REF} {Length: 4490} {RNA1509_26411, RNA1509_47712, RNA1509_51111, RNA1509_57920} {RNA1310_63.1, RNA1509_47712, RNA1509_51111, RNA1509_57920} {RNA1509_47712, RNA1509_51111, RNA1509_57920, RNA815_23.1}
20. MligTC455_36065 889 18.53 Mlig455_014334, Mlig455_020356, Mlig455_031898, Mlig455_036772, Mlig455_060660

Neo: -

Age: -

 1.773 - - - - 0.973 0.800

Mlig455_014334 {REF} {Length: 1229} {Pfam: Integrase core domain [PF00665.28, score=28.6]} {Smed: dd_Smed_v6_11155_0_5, dd_Smed_v6_11155_0_5, [Score=59.3, Expect=7e-11]} {RNA1509_21400} {RNA1310_576.1} {RNA815_2733.1}

Mlig455_020356 {REF} {Length: 6131} {Celegans: WBGene00016348, C33E10.6, [RH, Score=286, Expect=1e-84]} {Smed: dd_Smed_v6_9974_1_2, dd_Smed_v6_9974_1_2, [Score=300, Expect=3e-90]} {RNA1509_28643} {RNA1310_576.1} {RNA815_1671.1}

Mlig455_031898 {REF} {Length: 1129} {Pfam: Integrase core domain [PF00665.28, score=21.1]} {Smed: dd_Smed_v6_11155_0_2, dd_Smed_v6_11155_0_2, [Score=54.3, Expect=2e-10]} {RNA1509_21400} {RNA1310_576.1} {RNA815_2733.1}

Mlig455_036772 {REF} {Length: 1339} {Pfam: Integrase core domain [PF00665.28, score=34.8]} {Smed: dd_Smed_v6_11155_0_1, dd_Smed_v6_11155_0_1, [Score=57.4, Expect=4e-10]} {RNA1509_21400} {RNA1310_576.1} {RNA815_2733.1}

Mlig455_060660 {REF} {Length: 921} {Pfam: Integrase core domain [PF00665.28, score=33.9]} {Smed: dd_Smed_v6_11155_0_6, dd_Smed_v6_11155_0_6, [Score=56.6, Expect=6e-10]} {RNA1509_21400} {RNA1310_6101.1} {RNA815_23595}
21. MligTC455_26267 156 3.26 Mlig455_055846

Neo: -

Age: Up-Down-Down

 1.773 - - - - 0.820 0.953 Mlig455_055846 {REF} {Length: 4335} {Pfam: Mucin-like [PF16058.7, score=19.8]} {RNA1509_53350} {RNA1310_5450.1} {RNA815_7717.1}
22. MligTC455_20071 186 3.86 Mlig455_020495, Mlig455_021455, Mlig455_060464

Neo: -

Age: -

 1.771 - - 0.966 - 0.805 -

Mlig455_020495 {REF} {Length: 388} {NoTransDecoderORF} {RNA1509_29468} {RNA1310_143.1} {RNA815_104.1}

Mlig455_021455 {REF} {Length: 530} {NoTransDecoderORF} {RNA1509_43624} {RNA1310_9389.1} {RNA815_104.1}

Mlig455_060464 {REF} {Length: 346} {NoTransDecoderORF} {RNA1509_29468} {RNA1310_143.1} {RNA815_104.1}
23. MligTC455_07285 48 1 Mlig455_045441

Neo: -

Age: -

 1.758 - - - - 0.803 0.955 Mlig455_045441 {REF} {Length: 504} {NoTransDecoderORF}
24. MligTC455_11889 66 1.37 Mlig455_040154

Neo: -

Age: -

 1.751 - - - - 0.773 0.978 Mlig455_040154 {REF} {Length: 1508} {RNA1509_18432} {RNA1310_134295} {RNA815_29071}
25. MligTC455_40594 171 3.55 Mlig455_006568

Neo: -

Age: -

 1.73 - - - 0.770 - 0.960 Mlig455_006568 {REF} {Length: 1824} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_13277} {RNA1310_51098} {RNA815_47536}
26. MligTC455_12054 131 2.72 Mlig455_044496

Neo: -

Age: -

 1.718 - - - 0.766 - 0.952 Mlig455_044496 {REF} {Length: 776} {NoTransDecoderORF} {RNA1509_16540} {RNA1310_24195.2} {RNA815_7718}
27. MligTC455_57390 157 3.26 Mlig455_040521

Neo: -

Age: -

 1.717 - - - - 0.746 0.971 Mlig455_040521 {REF} {Length: 293} {NoTransDecoderORF}
28. MligTC455_07083 41 0.86 Mlig455_026981

Neo: -

Age: -

Regeneration-upregulated R2: 5.340

Regeneration-enriched R2: 5.340

 1.712 - - - - 0.739 0.973 Mlig455_026981 {REF} {Length: 1749} {RNA1509_26375} {RNA1310_32197} {RNA815_16782.1}
29. MligTC455_00892 28 0.59 Mlig455_025905

Neo: -

Age: -

 1.709 - - - - 0.745 0.964 Mlig455_025905 {REF} {Length: 994} {NoTransDecoderORF} {RNA1509_33187} {RNA1310_15716.1} {RNA815_44681}
30. MligTC455_28725 281 5.84 Mlig455_057062

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.361

Region-enriched R2: 3.359/0.00096

 ANK1 1.699 - - - - 0.748 0.951 Mlig455_057062 {REF} {Length: 9594} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=657.0]; Ankyrin repeats (many copies) [PF13637.8, score=564.6]; Ankyrin repeats (many copies) [PF13857.8, score=451.3]; Ankyrin repeat [PF13606.8, score=367.3]; Ankyrin repeat [PF00023.32, score=184.4]} {Human: ENSG00000029534, ANK1, ankyrin 1, [Score=148, Expect=9e-35]; ENSG00000145362, ANK2, ankyrin 2, [Score=147, Expect=1e-34]; ENSG00000151150, ANK3, ankyrin 3, [Score=146, Expect=4e-34]} {Mouse: ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=149, Expect=1e-35]; ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=149, Expect=4e-35]; ENSMUSG00000031543, Ank1, ankyrin 1, erythroid, [Score=145, Expect=7e-34]; ENSMUSG00000014496, Ankrd28, ankyrin repeat domain 28, [Score=144, Expect=8e-34]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=149, Expect=5e-35]} {Celegans: WBGene00006616, trp-4, TRP (Transient receptor potential) channel family, [Score=135, Expect=2e-31]} {Smed: dd_Smed_v6_5303_0_2, dd_Smed_v6_5303_0_2, [Score=172, Expect=3e-43]} {RNA1509_11517} {RNA1310_203} {RNA815_6981}
31. MligTC455_26668 406 8.46 Mlig455_011365

Neo: -

Age: -

Regeneration-upregulated BL: 6.270

Regeneration-enriched BL: 6.270

 1.684 - - - - 0.958 0.726 Mlig455_011365 {REF} {Length: 3699} {Pfam: Protein of unknown function (DUF1104) [PF06518.13, score=20.7]} {RNA1509_40399} {RNA1310_340.1} {RNA815_1857}
32. MligTC455_37013 102 2.12 Mlig455_028784

Neo: -

Age: -

 RPA1 1.683 - - 0.953 - 0.730 - Mlig455_028784 {REF} {Length: 4559} {Pfam: Replication protein A OB domain [PF16900.7, score=62.3]; OB-fold nucleic acid binding domain [PF01336.27, score=43.1]} {Human: ENSG00000132383, RPA1, replication protein A1, [Score=92.4, Expect=7e-20]} {Mouse: ENSMUSG00000000751, Rpa1, replication protein A1, [Score=86.3, Expect=5e-18]} {RNA1509_12100} {RNA1310_68428} {RNA815_14259}
33. MligTC455_55879 107 2.24 Mlig455_011363

Neo: -

Age: -

 1.67 - - 0.955 - 0.715 - Mlig455_011363 {REF} {Length: 427} {Smed: dd_Smed_v6_9974_1_8, dd_Smed_v6_9974_1_8, [Score=46.6, Expect=4e-07]} {RNA1509_28643} {RNA1310_576.1} {RNA815_1671.1}
34. MligTC455_47976 51 1.06 Mlig455_043576

Neo: -

Age: Down-Up-Down

 ISL1 0.99 - - - - - 0.990 Mlig455_043576 {REF} {Length: 3996} {Pfam: LIM domain [PF00412.24, score=99.4]; Homeodomain [PF00046.31, score=55.3]; Homeobox KN domain [PF05920.13, score=23.7]} {Human: ENSG00000016082, ISL1, ISL LIM homeobox 1, [Score=205, Expect=4e-61]} {Mouse: ENSMUSG00000042258, Isl1, ISL1 transcription factor, LIM/homeodomain, [Score=205, Expect=3e-61]} {Dmel: FBgn0003896, tup, tailup, [Score=182, Expect=3e-51]} {Celegans: WBGene00002989, lim-7, CeLIM-7; LIM domain family, [RH, Score=228, Expect=5e-69]} {Smed: dd_Smed_v6_8820_0_1, dd_Smed_v6_8820_0_1, [Score=327, Expect=3e-106]} {RNA1310_20628} {RNA815_37694}
35. MligTC455_32306 476 9.91 Mlig455_011146

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.714

 0.982 - - - - - 0.982 Mlig455_011146 {REF} {Length: 15000} {RNA1509_4044, RNA1509_4722} {RNA1310_655.1, RNA1509_4044} {RNA1509_4044, RNA815_335.1}
36. MligTC455_08974 45 0.95 Mlig455_031614

Neo: -

Age: -

 0.977 - - - - - 0.977 Mlig455_031614 {REF} {Length: 1585} {NoTransDecoderORF} {RNA1310_143211}
37. MligTC455_53054 53 1.11 Mlig455_060861

Neo: -

Age: logFC(26M/2M)=-0.451

Region-enriched R4: 4.246/0.04410

 0.975 - - - - - 0.975 Mlig455_060861 {REF} {Length: 1456} {RNA1509_13505} {RNA1310_40440.2} {RNA815_22046}
38. MligTC455_19846 421 8.77 Mlig455_008356

Neo: -

Age: Down-Up-Up

Region-enriched R2: 2.552/0.00697

 0.969 - - - - - 0.969 Mlig455_008356 {REF} {Length: 1722} {Pfam: Phosphotyrosine interaction domain (PTB/PID) [PF00640.25, score=29.7]; Phosphotyrosine interaction domain (PTB/PID) [PF14719.8, score=25.1]} {Dmel: FBgn0035431, CG14968, [RH, Score=80.5, Expect=1e-17]} {Smed: dd_Smed_v6_16269_0_1, dd_Smed_v6_16269_0_1, [RH, Score=52.0, Expect=1e-07]} {RNA1509_28129} {RNA1310_26006, RNA1509_28129} {RNA1509_28129, RNA815_14793}
39. MligTC455_03321 25 0.52 Mlig455_070046

Neo: -

Age: -

 0.965 - - - - - 0.965 Mlig455_070046 {REF} {Length: 222} {NoTransDecoderORF}
40. MligTC455_22289 141 2.94 Mlig455_040347

Neo: -

Age: -

 0.965 - - - - 0.965 - Mlig455_040347 {REF} {Length: 387} {NoTransDecoderORF} {RNA1509_42337} {RNA1310_27416.2} {RNA815_26632}
41. MligTC455_38112 144 3 Mlig455_035800, Mlig455_068307

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-1.078

 0.962 - - - - - 0.962

Mlig455_035800 {REF} {Length: 440} {NoTransDecoderORF}

Mlig455_068307 {REF} {Length: 195} {NoTransDecoderORF}
42. MligTC455_39463 228 4.76 Mlig455_025914, Mlig455_025946

Neo: -

Age: -

Regeneration-downregulated R4: -3.846

Regeneration-depleted R4: -3.846

 0.962 - - - - - 0.962

Mlig455_025914 {REF} {Length: 1257} {RNA1310_37139.1} {RNA815_50944}

Mlig455_025946 {REF} {Length: 2808} {tRNA: Ala(CGC),pseudo, score=22.1} {Pfam: Lectin C-type domain [PF00059.23, score=35.2]} {Smed: dd_Smed_v6_84586_0_1, dd_Smed_v6_84586_0_1, [RH, Score=53.1, Expect=4e-09]} {RNA1509_4810} {RNA1310_37139.1} {RNA815_40603}
43. MligTC455_40574 185 3.86 Mlig455_055994

Neo: -

Age: logFC(26M/2M)=0.739

 0.962 - - - - - 0.962 Mlig455_055994 {REF} {Length: 2305} {Pfam: Modifier of rudimentary (Mod(r)) protein [PF07200.15, score=20.1]} {RNA1509_55733} {RNA1310_23110} {RNA815_14988.1}
44. MligTC455_40152 71 1.48 Mlig455_044652

Neo: -

Age: -

 CALML3 0.961 - - - - - 0.961 Mlig455_044652 {REF} {Length: 973} {Pfam: EF hand [PF00036.34, score=85.2]; EF-hand domain pair [PF13499.8, score=84.3]; EF-hand domain [PF13405.8, score=70.9]; EF-hand domain pair [PF13833.8, score=61.0]; EF hand [PF13202.8, score=51.9]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=36.6]; EF-hand domain [PF14658.8, score=21.5]} {Human: ENSG00000178363, CALML3, calmodulin like 3, [Score=94.0, Expect=2e-24]} {Mouse: ENSMUSG00000033765, Calm4, calmodulin 4, [Score=86.3, Expect=1e-21]} {Dmel: FBgn0033238, azot, ahuizotl, [Score=76.3, Expect=7e-18]} {Celegans: WBGene00006583, tnc-2, Troponin C, isoform 2, [Score=63.5, Expect=4e-13]} {Smed: dd_Smed_v6_11942_0_1, dd_Smed_v6_11942_0_1, [Score=96.3, Expect=1e-25]} {RNA1310_41156} {RNA815_20058}
45. MligTC455_39724 59 1.22 Mlig455_026218

Neo: -

Age: -

 0.96 - - - - - 0.960 Mlig455_026218 {REF} {Length: 448} {NoTransDecoderORF} {RNA1509_22928} {RNA1310_87210} {RNA815_14978}
46. MligTC455_28388 126 2.63 Mlig455_007347, Mlig455_070613

Neo: -

Age: -

 0.959 - - - - 0.959 -

Mlig455_007347 {REF} {Length: 915} {RNA1509_12872} {RNA1310_56621} {RNA815_30528}

Mlig455_070613 {REF} {Length: 952} {NoTransDecoderORF} {RNA1509_25657} {RNA1310_41739} {RNA815_34613}
47. MligTC455_14580 159 3.32 Mlig455_030626, Mlig455_030698, Mlig455_031017

Neo: -

Age: logFC(26M/2M)=-0.809

Region-enriched R2: 3.469/0.03212

 0.958 - - - - - 0.958

Mlig455_030626 {REF} {Length: 2569} {RNA1509_58943} {RNA1310_27039, RNA1509_58943} {RNA1509_58943, RNA815_16088}

Mlig455_030698 {REF} {Length: 907} {RNA1509_39929} {RNA1310_27230} {RNA815_16088}

Mlig455_031017 {REF} {Length: 1218} {RNA1509_39929} {RNA1310_27230} {RNA815_16088}
48. MligTC455_19369 174 3.62 Mlig455_027643

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_027643 {REF} {Length: 677} {RNA1509_8759} {RNA1310_60559} {RNA815_28038}
49. MligTC455_28210 76 1.58 Mlig455_055621

Neo: -

Age: Up-Down-Down

 GABBR2 0.958 - - 0.958 - - - Mlig455_055621 {REF} {Length: 3422} {Pfam: 7 transmembrane sweet-taste receptor of 3 GCPR [PF00003.24, score=181.3]} {Human: ENSG00000136928, GABBR2, gamma-aminobutyric acid type B receptor subunit 2, [Score=278, Expect=7e-83]} {Mouse: ENSMUSG00000039809, Gabbr2, gamma-aminobutyric acid (GABA) B receptor, 2, [Score=278, Expect=8e-83]} {Dmel: FBgn0027575, GABA-B-R2, metabotropic GABA-B receptor subtype 2, [Score=320, Expect=5e-97]} {Celegans: WBGene00022675, gbb-2, GABA B receptor subunit; GABAB2 receptor subunit, [Score=241, Expect=5e-70]} {Smed: dd_Smed_v6_59890_0_1, dd_Smed_v6_59890_0_1, [Score=177, Expect=7e-53]} {RNA1509_30620} {RNA1310_13656} {RNA815_1450.1}
50. MligTC455_10850 44 0.91 Mlig455_015903

Neo: -

Age: -

 SLC47A1 0.957 - - 0.957 - - - Mlig455_015903 {REF} {Length: 3108} {Pfam: MatE [PF01554.20, score=163.9]} {Human: ENSG00000142494, SLC47A1, solute carrier family 47 member 1, [Score=296, Expect=2e-92]} {Mouse: ENSMUSG00000010122, Slc47a1, solute carrier family 47, member 1, [RH, Score=319, Expect=3e-101]; ENSMUSG00000069855, Slc47a2, solute carrier family 47, member 2, [RH, Score=311, Expect=2e-98]} {Smed: dd_Smed_v6_11376_0_1, dd_Smed_v6_11376_0_1, [Score=392, Expect=6e-130]} {RNA1509_41969} {RNA1310_11520} {RNA815_9412}
51. MligTC455_28134 273 5.69 Mlig455_011879, Mlig455_035312, Mlig455_044424

Neo: -

Age: -

Regeneration-upregulated BL: 3.772

Regeneration-enriched BL: 3.772

 0.957 - - - - - 0.957

Mlig455_011879 {REF} {Length: 800} {NoTransDecoderORF} {RNA1509_25657} {RNA1310_41739} {RNA815_34613}

Mlig455_035312 {REF} {Length: 554} {NoTransDecoderORF} {RNA1509_25657} {RNA1310_77645} {RNA815_26110}

Mlig455_044424 {REF} {Length: 823} {NoTransDecoderORF} {RNA1509_25657} {RNA1310_41739} {RNA815_34613}
52. MligTC455_07246 45 0.93 Mlig455_067474

Neo: -

Age: -

 SON 0.956 - - - - - 0.956 Mlig455_067474 {REF} {Length: 977} {Human: ENSG00000159140, SON, SON DNA binding protein, [Score=58.9, Expect=6e-10]} {Mouse: ENSMUSG00000022961, Son, Son DNA binding protein, [Score=59.3, Expect=3e-10]} {RNA1310_117140}
53. MligTC455_48715 129 2.7 Mlig455_015244

Neo: -

Age: logFC(26M/2M)=-0.557

 0.955 - - - - - 0.955 Mlig455_015244 {REF} {Length: 1838} {RNA1509_39666} {RNA1310_16691.2, RNA1509_39666} {RNA1509_39666, RNA815_18464}
54. MligTC455_52046 122 2.54 Mlig455_055948

Neo: -

Age: -

 0.955 - - - - - 0.955 Mlig455_055948 {REF} {Length: 893} {RNA1509_25185} {RNA1310_8316} {RNA815_7052}
55. MligTC455_57742 31 0.66 Mlig455_062810

Neo: -

Age: -

 0.955 - - - - - 0.955 Mlig455_062810 {REF} {Length: 356} {NoTransDecoderORF}
56. MligTC455_32520 870 18.12 Mlig455_026843, Mlig455_030855

Neo: -

Age: logFC(26M/2M)=-0.385

 NWD2 0.954 - - - - - 0.954

Mlig455_026843 {REF} {Length: 7404} {Pfam: Domain of unknown function (DUF4062) [PF13271.8, score=39.7]; AAA ATPase domain [PF13191.8, score=34.7]; NACHT domain [PF05729.14, score=34.5]} {Human: ENSG00000174145, NWD2, NACHT and WD repeat domain containing 2, [Score=347, Expect=3e-96]} {Mouse: ENSMUSG00000090061, Nwd2, NACHT and WD repeat domain containing 2, [Score=340, Expect=2e-94]} {Dmel: FBgn0038397, CG10185, [Score=472, Expect=4e-138]} {Celegans: WBGene00020254, T05C3.2, [Score=525, Expect=2e-156]} {Smed: dd_Smed_v6_11085_0_1, dd_Smed_v6_11085_0_1, [Score=381, Expect=1e-107]} {RNA1509_17875, RNA1509_23488} {RNA1310_514, RNA1509_17875, RNA1509_23488} {RNA1509_17875, RNA1509_23488, RNA815_237}

Mlig455_030855 {REF} {Length: 6561} {Pfam: Domain of unknown function (DUF4062) [PF13271.8, score=39.7]; AAA ATPase domain [PF13191.8, score=37.2]; NACHT domain [PF05729.14, score=33.7]; AAA domain [PF13481.8, score=19.8]; ATPase domain predominantly from Archaea [PF01637.20, score=19.1]} {Human: ENSG00000174145, NWD2, NACHT and WD repeat domain containing 2, [Score=349, Expect=6e-97]} {Mouse: ENSMUSG00000090061, Nwd2, NACHT and WD repeat domain containing 2, [Score=342, Expect=6e-95]} {Dmel: FBgn0038397, CG10185, [Score=471, Expect=2e-137]} {Celegans: WBGene00020254, T05C3.2, [Score=526, Expect=8e-157]} {Smed: dd_Smed_v6_11085_0_1, dd_Smed_v6_11085_0_1, [Score=380, Expect=3e-107]} {RNA1509_17875} {RNA1310_514} {RNA815_237}
57. MligTC455_46217 213 4.43 Mlig455_057532

Neo: -

Age: Down-Up-Down

 RBPMS2 0.954 - - - - - 0.954 Mlig455_057532 {REF} {Length: 5470} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=53.4]} {Human: ENSG00000166831, RBPMS2, RNA binding protein, mRNA processing factor 2, [RH, Score=128, Expect=2e-35]} {Mouse: ENSMUSG00000031586, Rbpms, RNA binding protein gene with multiple splicing, [RH, Score=125, Expect=3e-35]} {Dmel: FBgn0263995, cpo, couch potato, [Score=164, Expect=7e-46]} {Celegans: WBGene00003172, mec-8, Mec-8 protein, [Score=124, Expect=4e-33]} {Smed: dd_Smed_v6_4296_0_4, dd_Smed_v6_4296_0_4, [Score=150, Expect=3e-43]} {RNA1509_30119} {RNA1310_16586.1} {RNA815_23894}
58. MligTC455_01084 77 1.6 Mlig455_053225

Neo: -

Age: -

Regeneration-upregulated BL: 6.344

Regeneration-enriched BL: 6.344

 0.953 - - - - - 0.953 Mlig455_053225 {REF} {Length: 1010} {Pfam: Protein of unknown function (DUF3417) [PF11897.10, score=49.5]; Ehrlichia tandem repeat (Ehrlichia_rpt) [PF09528.12, score=32.3]; STI1 domain [PF17830.3, score=29.9]} {RNA1310_134114}
59. MligTC455_01666 36 0.75 Mlig455_045381

Neo: -

Age: -

 0.953 - - - - - 0.953 Mlig455_045381 {REF} {Length: 293} {NoTransDecoderORF} {RNA1310_16068} {RNA815_51476}
60. MligTC455_16759 98 2.04 Mlig455_001768

Neo: -

Age: logFC(26M/2M)=-0.479

 CDKL2 0.952 - - - - - 0.952 Mlig455_001768 {REF} {Length: 3091} {Pfam: Protein kinase domain [PF00069.27, score=242.4]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=124.0]; ABC1 atypical kinase-like domain [PF03109.18, score=17.9]} {Human: ENSG00000138769, CDKL2, cyclin dependent kinase like 2, [RH, Score=443, Expect=3e-149]} {Mouse: ENSMUSG00000029403, Cdkl2, cyclin-dependent kinase-like 2 (CDC2-related kinase), [RH, Score=425, Expect=1e-142]} {Dmel: FBgn0031730, CG7236, [Score=330, Expect=7e-108]} {Celegans: WBGene00012779, cdkl-1, Cyclin-Dependent Kinase-Like, [Score=337, Expect=2e-111]} {Smed: dd_Smed_v6_17162_0_1, dd_Smed_v6_17162_0_1, [RH, Score=409, Expect=1e-139]} {RNA1509_31808} {RNA1310_11068.1} {RNA815_5716}
61. MligTC455_38010 38 0.79 Mlig455_059485

Neo: -

Age: -

 0.952 - - - - - 0.952 Mlig455_059485 {REF} {Length: 1213} {Pfam: Lectin C-type domain [PF00059.23, score=24.8]} {RNA1509_20946} {RNA1310_35102} {RNA815_16139}
62. MligTC455_48347 475 9.9 Mlig455_063462

Neo: -

Age: -

 SCN10A 0.952 - - - - - 0.952 Mlig455_063462 {REF} {Length: 4702} {Pfam: Ion transport protein [PF00520.33, score=304.6]; Polycystin cation channel [PF08016.14, score=27.8]} {Human: ENSG00000185313, SCN10A, sodium voltage-gated channel alpha subunit 10, [Score=468, Expect=8e-143]; ENSG00000183873, SCN5A, sodium voltage-gated channel alpha subunit 5, [Score=457, Expect=5e-139]; ENSG00000153253, SCN3A, sodium voltage-gated channel alpha subunit 3, [Score=448, Expect=1e-135]; ENSG00000136531, SCN2A, sodium voltage-gated channel alpha subunit 2, [Score=447, Expect=2e-135]} {Mouse: ENSMUSG00000075318, Scn2a, sodium channel, voltage-gated, type II, alpha, [Score=449, Expect=4e-136]; ENSMUSG00000032511, Scn5a, sodium channel, voltage-gated, type V, alpha, [Score=447, Expect=1e-135]; ENSMUSG00000064329, Scn1a, sodium channel, voltage-gated, type I, alpha, [Score=447, Expect=2e-135]; ENSMUSG00000001027, Scn4a, sodium channel, voltage-gated, type IV, alpha, [Score=446, Expect=2e-135]; ENSMUSG00000057182, Scn3a, sodium channel, voltage-gated, type III, alpha, [Score=444, Expect=2e-134]} {Dmel: FBgn0285944, para, paralytic, [Score=438, Expect=4e-132]} {Celegans: WBGene00000367, cca-1, Voltage-dependent T-type calcium channel subunit alpha, [Score=182, Expect=8e-47]} {Smed: dd_Smed_v6_12243_0_1, dd_Smed_v6_12243_0_1, [Score=545, Expect=2e-177]} {RNA1509_2331} {RNA1310_965} {RNA815_185.1}
63. MligTC455_24857 216 4.51 Mlig455_002823

Neo: -

Age: Up-Down-Down

Region-enriched R2: 3.504/0.03359

 FREM1 0.95 - - - - - 0.950 Mlig455_002823 {REF} {Length: 6483} {Pfam: Cadherin-like [PF16184.7, score=272.5]; Frem protein N-terminal domain [PF19309.1, score=104.4]; Lectin C-type domain [PF00059.23, score=37.6]; Calx-beta domain [PF03160.16, score=22.2]} {Human: ENSG00000164946, FREM1, FRAS1 related extracellular matrix 1, [Score=233, Expect=8e-61]} {Mouse: ENSMUSG00000059049, Frem1, Fras1 related extracellular matrix protein 1, [Score=222, Expect=1e-57]} {Dmel: FBgn0032683, kon, kon-tiki, [Score=73.2, Expect=3e-12]} {Smed: dd_Smed_v6_5187_0_1, dd_Smed_v6_5187_0_1, [Score=275, Expect=5e-74]} {RNA1509_21458} {RNA1310_482.1} {RNA815_1329}
64. MligTC455_33841 898 18.71 Mlig455_004818, Mlig455_004886

Neo: -

Age: logFC(26M/2M)=-0.301

Region-enriched R2: 1.729/0.00165

 CDKL1 0.95 - - - - - 0.950

Mlig455_004818 {REF} {Length: 2858} {Pfam: Protein kinase domain [PF00069.27, score=245.7]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=115.2]; RIO1 family [PF01163.24, score=22.4]; Haspin like kinase domain [PF12330.10, score=17.8]} {Human: ENSG00000100490, CDKL1, cyclin dependent kinase like 1, [RH, Score=427, Expect=2e-147]; ENSG00000205111, CDKL4, cyclin dependent kinase like 4, [RH, Score=422, Expect=4e-145]} {Mouse: ENSMUSG00000020990, Cdkl1, cyclin-dependent kinase-like 1 (CDC2-related kinase), [RH, Score=430, Expect=6e-149]; ENSMUSG00000033966, Cdkl4, cyclin-dependent kinase-like 4, [RH, Score=421, Expect=1e-145]} {Dmel: FBgn0031730, CG7236, [RH, Score=379, Expect=7e-128]} {Celegans: WBGene00012779, cdkl-1, Cyclin-Dependent Kinase-Like, [RH, Score=395, Expect=1e-133]} {Smed: dd_Smed_v6_9353_0_1, dd_Smed_v6_9353_0_1, [RH, Score=478, Expect=1e-167]} {RNA1509_19679} {RNA1310_6686.2} {RNA815_5397}

Mlig455_004886 {REF} {Length: 2943} {Pfam: Protein kinase domain [PF00069.27, score=245.7]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=115.0]; RIO1 family [PF01163.24, score=22.4]; Haspin like kinase domain [PF12330.10, score=17.8]; ABC1 atypical kinase-like domain [PF03109.18, score=17.7]} {Human: ENSG00000100490, CDKL1, cyclin dependent kinase like 1, [RH, Score=428, Expect=6e-148]; ENSG00000205111, CDKL4, cyclin dependent kinase like 4, [RH, Score=422, Expect=4e-146]} {Mouse: ENSMUSG00000020990, Cdkl1, cyclin-dependent kinase-like 1 (CDC2-related kinase), [RH, Score=431, Expect=2e-149]; ENSMUSG00000033966, Cdkl4, cyclin-dependent kinase-like 4, [RH, Score=422, Expect=6e-146]} {Dmel: FBgn0031730, CG7236, [RH, Score=380, Expect=3e-128]} {Celegans: WBGene00012779, cdkl-1, Cyclin-Dependent Kinase-Like, [RH, Score=392, Expect=2e-132]} {Smed: dd_Smed_v6_9353_0_1, dd_Smed_v6_9353_0_1, [RH, Score=479, Expect=5e-168]} {RNA1509_19679} {RNA1310_6686.2} {RNA815_5397}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA