Data search
Results for MligTC455_29625
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_29625 | 8291 | 172.72 | Mlig455_041031 | Neo: - Age: Down-Up-Down |
DAZAP1 | Mlig455_041031 {REF} {Length: 1830} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=109.4]; RNA recognition motif [PF16367.7, score=50.3]; Nup53/35/40-type RNA recognition motif [PF14605.8, score=24.2]} {Human: ENSG00000071626, DAZAP1, DAZ associated protein 1, [RH, Score=177, Expect=1e-51]} {Mouse: ENSMUSG00000069565, Dazap1, DAZ associated protein 1, [RH, Score=175, Expect=5e-51]} {Dmel: FBgn0004838, Hrb27C, Heterogeneous nuclear ribonucleoprotein at 27C, [RH, Score=169, Expect=1e-48]} {Celegans: WBGene00003423, msi-1, MuSashI (Fly neural) family; Neural RNA-binding protein MSI-1, [Score=148, Expect=6e-42]} {Smed: dd_Smed_v6_1047_0_1, dd_Smed_v6_1047_0_1, [RH, Score=240, Expect=4e-77]} {RNA1509_596, RNA1509_7407} {RNA1310_18564, RNA1509_7407} {RNA1509_7407, RNA815_7168.1} |
Cumulative graph for MligTC455_29625
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -1.146 | 7.538 | 0.00930 | 0.28337 | |
| RegionR2 | -0.368 | 7.538 | 0.13273 | 0.45232 | |
| RegionR3 | 0.304 | 7.538 | 0.12399 | 0.60682 | |
| RegionR4 | 0.742 | 7.538 | 0.00146 | 0.01400 | |
| RegionR5 | 0.44 | 7.538 | 0.02071 | 0.09947 | |
| RegionR6 | 0.292 | 7.538 | 0.14545 | 0.68156 | |
| RegionR7 | 0.192 | 7.538 | 0.37652 | 1.00000 | |
| RegionR8 | -0.455 | 7.538 | 0.09026 | 0.56811 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | 0.085 | 7.538 | 0.88764 | 1.00000 | |
| RegenerationR2 | 0.109 | 7.538 | 0.65061 | 0.93664 | |
| RegenerationR3 | -0.045 | 7.538 | 0.85748 | 1.00000 | |
| RegenerationR4 | -0.186 | 7.538 | 0.47603 | 0.85650 | |
| RegenerationR5 | -0.196 | 7.538 | 0.42407 | 0.81405 | |
| RegenerationR6 | -0.028 | 7.538 | 0.91031 | 1.00000 | |
| RegenerationBL | 0.591 | 7.538 | 0.00956 | 0.09803 | |
| RegenerationTP | 0.375 | 7.538 | 0.13915 | 0.55689 |
Genes with expression patterns similar to MligTC455_29625
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_29625 | 8291 | 172.72 | Mlig455_041031 | Neo: - Age: Down-Up-Down |
DAZAP1 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_041031 {REF} {Length: 1830} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=109.4]; RNA recognition motif [PF16367.7, score=50.3]; Nup53/35/40-type RNA recognition motif [PF14605.8, score=24.2]} {Human: ENSG00000071626, DAZAP1, DAZ associated protein 1, [RH, Score=177, Expect=1e-51]} {Mouse: ENSMUSG00000069565, Dazap1, DAZ associated protein 1, [RH, Score=175, Expect=5e-51]} {Dmel: FBgn0004838, Hrb27C, Heterogeneous nuclear ribonucleoprotein at 27C, [RH, Score=169, Expect=1e-48]} {Celegans: WBGene00003423, msi-1, MuSashI (Fly neural) family; Neural RNA-binding protein MSI-1, [Score=148, Expect=6e-42]} {Smed: dd_Smed_v6_1047_0_1, dd_Smed_v6_1047_0_1, [RH, Score=240, Expect=4e-77]} {RNA1509_596, RNA1509_7407} {RNA1310_18564, RNA1509_7407} {RNA1509_7407, RNA815_7168.1} |
| 2. | MligTC455_29626 | 8303 | 172.97 | Mlig455_041134 | Neo: Irradiation |
DAZAP1 | 5.993 | 1.000 | 1.000 | 0.999 | 1.000 | 0.998 | 0.996 | Mlig455_041134 {REF} {Length: 1839} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=109.2]; RNA recognition motif [PF16367.7, score=50.8]; Nup53/35/40-type RNA recognition motif [PF14605.8, score=24.5]} {Human: ENSG00000071626, DAZAP1, DAZ associated protein 1, [RH, Score=177, Expect=8e-52]} {Mouse: ENSMUSG00000069565, Dazap1, DAZ associated protein 1, [RH, Score=175, Expect=5e-51]} {Dmel: FBgn0004838, Hrb27C, Heterogeneous nuclear ribonucleoprotein at 27C, [RH, Score=168, Expect=2e-48]} {Celegans: WBGene00003423, msi-1, MuSashI (Fly neural) family; Neural RNA-binding protein MSI-1, [Score=149, Expect=5e-42]} {Smed: dd_Smed_v6_1047_0_1, dd_Smed_v6_1047_0_1, [RH, Score=240, Expect=3e-77]} {RNA1509_3807, RNA1509_596} {RNA1310_18564, RNA1509_3807, RNA1509_596} {RNA1509_3807, RNA1509_596, RNA815_7168.1} |
| 3. | MligTC455_44865 | 1105 | 23.03 | Mlig455_051846 | Neo: Int S/G2/M Age: - |
0.98 | - | - | - | - | 0.980 | - | Mlig455_051846 {REF} {Length: 1626} {TRANSSPLICED} {RNA1509_9491} {RNA1310_17085, RNA1509_9491} {RNA1509_9491, RNA815_7748} | |
| 4. | MligTC455_23313 | 10820 | 225.41 | Mlig455_014147 | Neo: Int S/G2/M Age: - |
PSMB5 | 0.967 | - | - | - | 0.967 | - | - | Mlig455_014147 {REF} {Length: 1542} {Pfam: Proteasome subunit [PF00227.28, score=164.4]} {Human: ENSG00000100804, PSMB5, proteasome subunit beta 5, [RH, Score=283, Expect=2e-96]; ENSG00000206298, PSMB8, proteasome subunit beta 8, [RH, Score=269, Expect=1e-90]; ENSG00000231631, PSMB8, proteasome subunit beta 8, [RH, Score=269, Expect=1e-90]; ENSG00000230669, PSMB8, proteasome subunit beta 8, [RH, Score=269, Expect=1e-90]; ENSG00000236443, PSMB8, proteasome subunit beta 8, [RH, Score=269, Expect=1e-90]; ENSG00000235715, PSMB8, proteasome subunit beta 8, [RH, Score=269, Expect=1e-90]; ENSG00000226201, PSMB8, proteasome subunit beta 8, [RH, Score=269, Expect=1e-90]; ENSG00000204264, PSMB8, proteasome subunit beta 8, [RH, Score=269, Expect=1e-90]; ENSG00000230034, PSMB8, proteasome subunit beta 8, [RH, Score=269, Expect=1e-90]} {Mouse: ENSMUSG00000022193, Psmb5, proteasome (prosome, macropain) subunit, beta type 5, [RH, Score=288, Expect=2e-98]; ENSMUSG00000024338, Psmb8, proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7), [RH, Score=275, Expect=6e-93]} {Dmel: FBgn0029134, Prosbeta5, Proteasome beta5 subunit, [RH, Score=285, Expect=3e-97]} {Celegans: WBGene00003951, pbs-5, Proteasome subunit beta type, [RH, Score=216, Expect=3e-70]} {Smed: dd_Smed_v6_2007_0_1, dd_Smed_v6_2007_0_1, [RH, Score=311, Expect=2e-107]} {RNA1509_17982, RNA1509_2496, RNA1509_8108} {RNA1310_26820, RNA1509_17982, RNA1509_8108} {RNA1509_17982, RNA1509_8108, RNA815_12107} |
| 5. | MligTC455_37102 | 3384 | 70.49 | Mlig455_052488 | Neo: - Age: - |
UBA1 | 0.965 | - | - | - | 0.965 | - | - | Mlig455_052488 {REF} {Length: 4470} {TRANSSPLICED} {Pfam: ThiF family [PF00899.23, score=365.5]; Ubiquitin-activating enzyme active site [PF10585.11, score=295.6]; Ubiquitin fold domain [PF09358.12, score=121.9]; Ubiquitin-activating enzyme E1 FCCH domain [PF16190.7, score=100.4]; Ubiquitin-activating enzyme E1 four-helix bundle [PF16191.7, score=83.4]} {Human: ENSG00000130985, UBA1, ubiquitin like modifier activating enzyme 1, [RH, Score=1182, Expect=0.0]} {Mouse: ENSMUSG00000001924, Uba1, ubiquitin-like modifier activating enzyme 1, [RH, Score=1172, Expect=0.0]; ENSMUSG00000069053, Uba1y, ubiquitin-activating enzyme, Chr Y, [RH, Score=1133, Expect=0.0]} {Dmel: FBgn0023143, Uba1, Ubiquitin activating enzyme 1, [RH, Score=1104, Expect=0.0]} {Celegans: WBGene00006699, uba-1, UBA (Human ubiquitin) related, [RH, Score=899, Expect=0.0]} {Smed: dd_Smed_v6_2377_0_1, dd_Smed_v6_2377_0_1, [RH, Score=1091, Expect=0.0]} {RNA1509_838} {RNA1310_3880} {RNA815_342.1} |
| 6. | MligTC455_34830 | 18442 | 384.21 | Mlig455_038069 | Neo: Int S/G2/M |
RPS6 | 0.954 | - | - | - | 0.954 | - | - | Mlig455_038069 {REF} {Length: 933} {TRANSSPLICED} {Pfam: Ribosomal protein S6e [PF01092.21, score=180.8]} {Human: ENSG00000137154, RPS6, ribosomal protein S6, [RH, Score=355, Expect=9e-125]} {Mouse: ENSMUSG00000028495, Rps6, ribosomal protein S6, [RH, Score=355, Expect=6e-125]} {Dmel: FBgn0261592, RpS6, Ribosomal protein S6, [RH, Score=321, Expect=1e-111]} {Celegans: WBGene00004475, rps-6, 40S ribosomal protein S6, [RH, Score=290, Expect=2e-99]} {Smed: dd_Smed_v6_178_0_1, dd_Smed_v6_178_0_1, [RH, Score=295, Expect=9e-102]} {RNA1509_39601} {RNA1310_36660.2} {RNA815_17336.2} |
| 7. | MligTC455_45361 | 1171 | 24.39 | Mlig455_048928 | Neo: Int S/G2/M Age: Down-Up-Up Region-enriched R5: 1.508/0.00070 |
SCO1 | 0.95 | - | - | - | 0.950 | - | - | Mlig455_048928 {REF} {Length: 1064} {TRANSSPLICED} {Pfam: SCO1/SenC [PF02630.16, score=147.3]; AhpC/TSA family [PF00578.23, score=22.3]} {Human: ENSG00000133028, SCO1, SCO1, cytochrome c oxidase assembly protein, [RH, Score=185, Expect=2e-56]} {Mouse: ENSMUSG00000069844, Sco1, SCO1 cytochrome c oxidase assembly protein, [RH, Score=192, Expect=6e-60]} {Dmel: FBgn0262467, Scox, Synthesis of cytochrome c oxidase, [RH, Score=177, Expect=3e-54]} {Celegans: WBGene00015297, sco-1, SCO (Yeast Suppressor of Cytochrome Oxidase deficiency) homolog, [RH, Score=186, Expect=2e-57]} {Smed: dd_Smed_v6_2747_0_1, dd_Smed_v6_2747_0_1, [RH, Score=206, Expect=4e-66]} {RNA1509_10939, RNA1509_36634} {RNA1310_31267, RNA1509_10939, RNA1509_36634} {RNA1509_10939, RNA1509_36634, RNA815_17642} |
Berezikov Lab - 2020-2021 © ERIBA