TomoSeq data search

Data search

Results for MligTC455_29626

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_29626

8303

172.97

Mlig455_041134

Neo: Irradiation

Age: Down-Up-Up, logFC(26M/2M)=0.250

DAZAP1

Mlig455_041134 {REF} {Length: 1839} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=109.2]; RNA recognition motif [PF16367.7, score=50.8]; Nup53/35/40-type RNA recognition motif [PF14605.8, score=24.5]} {Human: ENSG00000071626, DAZAP1, DAZ associated protein 1, [RH, Score=177, Expect=8e-52]} {Mouse: ENSMUSG00000069565, Dazap1, DAZ associated protein 1, [RH, Score=175, Expect=5e-51]} {Dmel: FBgn0004838, Hrb27C, Heterogeneous nuclear ribonucleoprotein at 27C, [RH, Score=168, Expect=2e-48]} {Celegans: WBGene00003423, msi-1, MuSashI (Fly neural) family; Neural RNA-binding protein MSI-1, [Score=149, Expect=5e-42]} {Smed: dd_Smed_v6_1047_0_1, dd_Smed_v6_1047_0_1, [RH, Score=240, Expect=3e-77]} {RNA1509_3807, RNA1509_596} {RNA1310_18564, RNA1509_3807, RNA1509_596} {RNA1509_3807, RNA1509_596, RNA815_7168.1}

Cumulative graph for MligTC455_29626

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-1.151	7.54	0.00930	0.28337
RegionR2	-0.362	7.54	0.14343	0.47168
RegionR3	0.308	7.54	0.12254	0.60452
RegionR4	0.733	7.54	0.00186	0.01690
RegionR5	0.445	7.54	0.02062	0.09918
RegionR6	0.291	7.54	0.14985	0.68991
RegionR7	0.191	7.54	0.38197	1.00000
RegionR8	-0.455	7.54	0.09236	0.57410

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	0.086	7.54	0.88605	1.00000
RegenerationR2	0.101	7.54	0.67888	0.94859
RegenerationR3	-0.032	7.54	0.90054	1.00000
RegenerationR4	-0.197	7.54	0.45561	0.84463
RegenerationR5	-0.198	7.54	0.42449	0.81405
RegenerationR6	-0.015	7.54	0.95391	1.00000
RegenerationBL	0.582	7.54	0.01148	0.10913
RegenerationTP	0.379	7.54	0.13804	0.55598

Genes with expression patterns similar to MligTC455_29626

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_29626	8303	172.97	Mlig455_041134	Neo: Irradiation Age: Down-Up-Up, logFC(26M/2M)=0.250	DAZAP1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_041134 {REF} {Length: 1839} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=109.2]; RNA recognition motif [PF16367.7, score=50.8]; Nup53/35/40-type RNA recognition motif [PF14605.8, score=24.5]} {Human: ENSG00000071626, DAZAP1, DAZ associated protein 1, [RH, Score=177, Expect=8e-52]} {Mouse: ENSMUSG00000069565, Dazap1, DAZ associated protein 1, [RH, Score=175, Expect=5e-51]} {Dmel: FBgn0004838, Hrb27C, Heterogeneous nuclear ribonucleoprotein at 27C, [RH, Score=168, Expect=2e-48]} {Celegans: WBGene00003423, msi-1, MuSashI (Fly neural) family; Neural RNA-binding protein MSI-1, [Score=149, Expect=5e-42]} {Smed: dd_Smed_v6_1047_0_1, dd_Smed_v6_1047_0_1, [RH, Score=240, Expect=3e-77]} {RNA1509_3807, RNA1509_596} {RNA1310_18564, RNA1509_3807, RNA1509_596} {RNA1509_3807, RNA1509_596, RNA815_7168.1}
2.	MligTC455_29625	8291	172.72	Mlig455_041031	Neo: - Age: Down-Up-Down	DAZAP1	5.993	1.000	1.000	0.999	1.000	0.998	0.996	Mlig455_041031 {REF} {Length: 1830} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=109.4]; RNA recognition motif [PF16367.7, score=50.3]; Nup53/35/40-type RNA recognition motif [PF14605.8, score=24.2]} {Human: ENSG00000071626, DAZAP1, DAZ associated protein 1, [RH, Score=177, Expect=1e-51]} {Mouse: ENSMUSG00000069565, Dazap1, DAZ associated protein 1, [RH, Score=175, Expect=5e-51]} {Dmel: FBgn0004838, Hrb27C, Heterogeneous nuclear ribonucleoprotein at 27C, [RH, Score=169, Expect=1e-48]} {Celegans: WBGene00003423, msi-1, MuSashI (Fly neural) family; Neural RNA-binding protein MSI-1, [Score=148, Expect=6e-42]} {Smed: dd_Smed_v6_1047_0_1, dd_Smed_v6_1047_0_1, [RH, Score=240, Expect=4e-77]} {RNA1509_596, RNA1509_7407} {RNA1310_18564, RNA1509_7407} {RNA1509_7407, RNA815_7168.1}
3.	MligTC455_44865	1105	23.03	Mlig455_051846	Neo: Int S/G2/M Age: -		0.972	-	-	-	-	0.972	-	Mlig455_051846 {REF} {Length: 1626} {TRANSSPLICED} {RNA1509_9491} {RNA1310_17085, RNA1509_9491} {RNA1509_9491, RNA815_7748}
4.	MligTC455_37102	3384	70.49	Mlig455_052488	Neo: - Age: -	UBA1	0.968	-	-	-	0.968	-	-	Mlig455_052488 {REF} {Length: 4470} {TRANSSPLICED} {Pfam: ThiF family [PF00899.23, score=365.5]; Ubiquitin-activating enzyme active site [PF10585.11, score=295.6]; Ubiquitin fold domain [PF09358.12, score=121.9]; Ubiquitin-activating enzyme E1 FCCH domain [PF16190.7, score=100.4]; Ubiquitin-activating enzyme E1 four-helix bundle [PF16191.7, score=83.4]} {Human: ENSG00000130985, UBA1, ubiquitin like modifier activating enzyme 1, [RH, Score=1182, Expect=0.0]} {Mouse: ENSMUSG00000001924, Uba1, ubiquitin-like modifier activating enzyme 1, [RH, Score=1172, Expect=0.0]; ENSMUSG00000069053, Uba1y, ubiquitin-activating enzyme, Chr Y, [RH, Score=1133, Expect=0.0]} {Dmel: FBgn0023143, Uba1, Ubiquitin activating enzyme 1, [RH, Score=1104, Expect=0.0]} {Celegans: WBGene00006699, uba-1, UBA (Human ubiquitin) related, [RH, Score=899, Expect=0.0]} {Smed: dd_Smed_v6_2377_0_1, dd_Smed_v6_2377_0_1, [RH, Score=1091, Expect=0.0]} {RNA1509_838} {RNA1310_3880} {RNA815_342.1}
5.	MligTC455_23313	10820	225.41	Mlig455_014147	Neo: Int S/G2/M Age: -	PSMB5	0.967	-	-	-	0.967	-	-	Mlig455_014147 {REF} {Length: 1542} {Pfam: Proteasome subunit [PF00227.28, score=164.4]} {Human: ENSG00000100804, PSMB5, proteasome subunit beta 5, [RH, Score=283, Expect=2e-96]; ENSG00000206298, PSMB8, proteasome subunit beta 8, [RH, Score=269, Expect=1e-90]; ENSG00000231631, PSMB8, proteasome subunit beta 8, [RH, Score=269, Expect=1e-90]; ENSG00000230669, PSMB8, proteasome subunit beta 8, [RH, Score=269, Expect=1e-90]; ENSG00000236443, PSMB8, proteasome subunit beta 8, [RH, Score=269, Expect=1e-90]; ENSG00000235715, PSMB8, proteasome subunit beta 8, [RH, Score=269, Expect=1e-90]; ENSG00000226201, PSMB8, proteasome subunit beta 8, [RH, Score=269, Expect=1e-90]; ENSG00000204264, PSMB8, proteasome subunit beta 8, [RH, Score=269, Expect=1e-90]; ENSG00000230034, PSMB8, proteasome subunit beta 8, [RH, Score=269, Expect=1e-90]} {Mouse: ENSMUSG00000022193, Psmb5, proteasome (prosome, macropain) subunit, beta type 5, [RH, Score=288, Expect=2e-98]; ENSMUSG00000024338, Psmb8, proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7), [RH, Score=275, Expect=6e-93]} {Dmel: FBgn0029134, Prosbeta5, Proteasome beta5 subunit, [RH, Score=285, Expect=3e-97]} {Celegans: WBGene00003951, pbs-5, Proteasome subunit beta type, [RH, Score=216, Expect=3e-70]} {Smed: dd_Smed_v6_2007_0_1, dd_Smed_v6_2007_0_1, [RH, Score=311, Expect=2e-107]} {RNA1509_17982, RNA1509_2496, RNA1509_8108} {RNA1310_26820, RNA1509_17982, RNA1509_8108} {RNA1509_17982, RNA1509_8108, RNA815_12107}
6.	MligTC455_34830	18442	384.21	Mlig455_038069	Neo: Int S/G2/M Age: Down-Down-Up, logFC(26M/2M)=0.250	RPS6	0.957	-	-	-	0.957	-	-	Mlig455_038069 {REF} {Length: 933} {TRANSSPLICED} {Pfam: Ribosomal protein S6e [PF01092.21, score=180.8]} {Human: ENSG00000137154, RPS6, ribosomal protein S6, [RH, Score=355, Expect=9e-125]} {Mouse: ENSMUSG00000028495, Rps6, ribosomal protein S6, [RH, Score=355, Expect=6e-125]} {Dmel: FBgn0261592, RpS6, Ribosomal protein S6, [RH, Score=321, Expect=1e-111]} {Celegans: WBGene00004475, rps-6, 40S ribosomal protein S6, [RH, Score=290, Expect=2e-99]} {Smed: dd_Smed_v6_178_0_1, dd_Smed_v6_178_0_1, [RH, Score=295, Expect=9e-102]} {RNA1509_39601} {RNA1310_36660.2} {RNA815_17336.2}
7.	MligTC455_20884	23116	481.59	Mlig455_031083	Neo: Int S/G2/M Age: logFC(26M/2M)=0.461	RPS2	0.95	-	-	-	0.950	-	-	Mlig455_031083 {REF} {Length: 1134} {TRANSSPLICED} {Pfam: Ribosomal protein S5, C-terminal domain [PF03719.17, score=76.5]; Ribosomal protein S5, N-terminal domain [PF00333.22, score=45.3]} {Human: ENSG00000140988, RPS2, ribosomal protein S2, [Score=245, Expect=9e-81]} {Mouse: ENSMUSG00000044533, Rps2, ribosomal protein S2, [Score=244, Expect=2e-80]} {Dmel: FBgn0004867, RpS2, Ribosomal protein S2, [Score=241, Expect=7e-80]} {Celegans: WBGene00004471, rps-2, 40S ribosomal protein S2, [Score=230, Expect=8e-76]} {Smed: dd_Smed_v6_226_0_1, dd_Smed_v6_226_0_1, [Score=232, Expect=7e-77]} {RNA1509_1407, RNA1509_14969, RNA1509_416} {RNA1310_24330, RNA1509_1407, RNA1509_14969} {RNA1509_1407, RNA1509_14969, RNA815_12223.2}

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