Data search
Results for MligTC455_30078
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_30078 | 422 | 8.80 | Mlig455_035919 | Neo: - Age: - |
SEMA3E | Mlig455_035919 {REF} {Length: 4961} {TRANSSPLICED} {Pfam: Sema domain [PF01403.21, score=72.0]} {Human: ENSG00000170381, SEMA3E, semaphorin 3E, [Score=77.4, Expect=5e-14]; ENSG00000187764, SEMA4D, semaphorin 4D, [Score=75.1, Expect=3e-13]} {Mouse: ENSMUSG00000063531, Sema3e, sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E, [Score=75.9, Expect=1e-13]} {Celegans: WBGene00004890, smp-2, SeMaPhorin related, [Score=52.8, Expect=9e-07]} {Smed: dd_Smed_v6_12018_0_1, dd_Smed_v6_12018_0_1, [RH, Score=52.4, Expect=8e-07]} {RNA1310_11198} {RNA815_5413} |
Cumulative graph for MligTC455_30078
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -0.913 | 3.551 | 0.51331 | 1.00000 | |
| RegionR2 | 0.192 | 3.551 | 0.70279 | 1.00000 | |
| RegionR3 | -0.041 | 3.551 | 0.92702 | 1.00000 | |
| RegionR4 | 0.035 | 3.551 | 0.94454 | 1.00000 | |
| RegionR5 | 0.424 | 3.551 | 0.26526 | 0.58823 | |
| RegionR6 | 0.44 | 3.551 | 0.29021 | 0.88183 | |
| RegionR7 | -0.134 | 3.551 | 0.82332 | 1.00000 | |
| RegionR8 | -0.003 | 3.551 | 0.99725 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | 0.103 | 3.551 | 0.95864 | 1.00000 | |
| RegenerationR2 | 0.208 | 3.551 | 0.58027 | 0.90707 | |
| RegenerationR3 | 0.103 | 3.551 | 0.82106 | 0.98803 | |
| RegenerationR4 | 0.299 | 3.551 | 0.51724 | 0.87848 | |
| RegenerationR5 | 0.33 | 3.551 | 0.39848 | 0.79833 | |
| RegenerationR6 | -0.25 | 3.551 | 0.58317 | 0.85938 | |
| RegenerationBL | -0.954 | 3.551 | 0.15566 | 0.47217 | |
| RegenerationTP | 0.52 | 3.551 | 0.38424 | 0.81842 |
Genes with expression patterns similar to MligTC455_30078
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_30078 | 422 | 8.8 | Mlig455_035919 | Neo: - Age: - |
SEMA3E | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_035919 {REF} {Length: 4961} {TRANSSPLICED} {Pfam: Sema domain [PF01403.21, score=72.0]} {Human: ENSG00000170381, SEMA3E, semaphorin 3E, [Score=77.4, Expect=5e-14]; ENSG00000187764, SEMA4D, semaphorin 4D, [Score=75.1, Expect=3e-13]} {Mouse: ENSMUSG00000063531, Sema3e, sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E, [Score=75.9, Expect=1e-13]} {Celegans: WBGene00004890, smp-2, SeMaPhorin related, [Score=52.8, Expect=9e-07]} {Smed: dd_Smed_v6_12018_0_1, dd_Smed_v6_12018_0_1, [RH, Score=52.4, Expect=8e-07]} {RNA1310_11198} {RNA815_5413} |
| 2. | MligTC455_24837 | 414 | 8.62 | Mlig455_013488 | Neo: - Age: - |
DGKZ | 1.879 | - | - | 0.922 | 0.957 | - | - | Mlig455_013488 {REF} {Length: 7616} {Pfam: Diacylglycerol kinase accessory domain [PF00609.21, score=144.5]; Diacylglycerol kinase catalytic domain [PF00781.26, score=97.6]; Ankyrin repeats (3 copies) [PF12796.9, score=48.5]; Phorbol esters/diacylglycerol binding domain (C1 domain) [PF00130.24, score=42.0]; Ankyrin repeats (many copies) [PF13637.8, score=40.3]; Ankyrin repeats (many copies) [PF13857.8, score=39.6]; Ankyrin repeat [PF00023.32, score=36.0]; Ankyrin repeat [PF13606.8, score=23.5]} {Human: ENSG00000149091, DGKZ, diacylglycerol kinase zeta, [RH, Score=692, Expect=0.0]; ENSG00000157680, DGKI, diacylglycerol kinase iota, [RH, Score=668, Expect=0.0]} {Mouse: ENSMUSG00000040479, Dgkz, diacylglycerol kinase zeta, [Score=693, Expect=0.0]; ENSMUSG00000038665, Dgki, diacylglycerol kinase, iota, [Score=677, Expect=0.0]} {Dmel: FBgn0261549, rdgA, retinal degeneration A, [Score=550, Expect=3e-174]} {Celegans: WBGene00019428, dgk-5, Putative diacylglycerol kinase K06A1.6, [Score=405, Expect=1e-121]} {Smed: dd_Smed_v6_12579_0_4, dd_Smed_v6_12579_0_4, [Score=791, Expect=0.0]} {RNA1509_12565} {RNA1310_3047.1} {RNA815_7792.1} |
| 3. | MligTC455_50332 | 167 | 3.47 | Mlig455_045442 | Neo: - Age: - |
TGFBR1 | 1.79 | 0.956 | - | - | 0.834 | - | - | Mlig455_045442 {REF} {Length: 2893} {Pfam: Protein kinase domain [PF00069.27, score=95.1]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=92.0]; ABC1 atypical kinase-like domain [PF03109.18, score=30.4]; Transforming growth factor beta type I GS-motif [PF08515.14, score=20.1]} {Human: ENSG00000106799, TGFBR1, transforming growth factor beta receptor 1, [Score=261, Expect=4e-81]; ENSG00000135503, ACVR1B, activin A receptor type 1B, [Score=254, Expect=3e-78]} {Mouse: ENSMUSG00000007613, Tgfbr1, transforming growth factor, beta receptor I, [Score=263, Expect=3e-82]; ENSMUSG00000000532, Acvr1b, activin A receptor, type 1B, [Score=253, Expect=2e-77]} {Dmel: FBgn0011300, babo, baboon, [Score=259, Expect=3e-79]} {Celegans: WBGene00000897, daf-1, Cell surface receptor daf-1, [Score=187, Expect=1e-51]} {Smed: dd_Smed_v6_3426_0_1, dd_Smed_v6_3426_0_1, [Score=229, Expect=2e-67]} {RNA1509_17304, RNA1509_38608} {RNA1310_10744, RNA1509_38608} {RNA1509_38608, RNA815_11070} |
| 4. | MligTC455_52748 | 199 | 4.15 | Mlig455_061690 | Neo: - Age: - |
SNTB1 | 1.661 | - | - | 0.958 | - | - | 0.703 | Mlig455_061690 {REF} {Length: 3251} {Pfam: PDZ domain [PF00595.26, score=71.2]; PH domain [PF18012.3, score=53.6]; PH domain [PF00169.31, score=39.0]; PDZ domain [PF17820.3, score=25.1]} {Human: ENSG00000172164, SNTB1, syntrophin beta 1, [RH, Score=390, Expect=5e-130]; ENSG00000168807, SNTB2, syntrophin beta 2, [RH, Score=388, Expect=2e-129]} {Mouse: ENSMUSG00000041308, Sntb2, syntrophin, basic 2, [RH, Score=389, Expect=7e-130]; ENSMUSG00000060429, Sntb1, syntrophin, basic 1, [RH, Score=380, Expect=1e-126]} {Dmel: FBgn0037130, Syn1, Syntrophin-like 1, [RH, Score=350, Expect=1e-113]} {Celegans: WBGene00006062, stn-1, Syntrophin-1, [RH, Score=210, Expect=3e-62]} {Smed: dd_Smed_v6_7105_0_1, dd_Smed_v6_7105_0_1, [Score=459, Expect=6e-158]} {RNA1509_18297} {RNA1310_10457} {RNA815_22317} |
| 5. | MligTC455_16493 | 108 | 2.24 | Mlig455_056082 | Neo: - Age: - |
0.974 | 0.974 | - | - | - | - | - | Mlig455_056082 {REF} {Length: 1435} {TRANSSPLICED} {RNA1509_51231} {RNA1310_26337} {RNA815_26193} | |
| 6. | MligTC455_27660 | 736 | 15.33 | Mlig455_064735 | Neo: - Age: - |
COQ3 | 0.967 | - | - | 0.967 | - | - | - | Mlig455_064735 {REF} {Length: 1717} {TRANSSPLICED} {Pfam: Methyltransferase domain [PF13489.8, score=79.3]; Methyltransferase domain [PF08241.14, score=70.0]; Methyltransferase domain [PF13649.8, score=57.4]; Methyltransferase domain [PF08242.14, score=52.4]; Methyltransferase domain [PF13847.8, score=49.8]; Mycolic acid cyclopropane synthetase [PF02353.22, score=28.9]; Methyltransferase domain [PF13679.8, score=20.8]; Methyltransferase small domain [PF05175.16, score=19.4]; Nodulation protein S (NodS) [PF05401.13, score=19.3]} {Human: ENSG00000132423, COQ3, coenzyme Q3, methyltransferase, [RH, Score=204, Expect=2e-63]} {Mouse: ENSMUSG00000028247, Coq3, coenzyme Q3 methyltransferase, [RH, Score=202, Expect=9e-63]} {Dmel: FBgn0032922, CG9249, [RH, Score=148, Expect=8e-43]} {Celegans: WBGene00000763, coq-3, Ubiquinone biosynthesis O-methyltransferase, mitochondrial, [RH, Score=167, Expect=9e-51]} {Smed: dd_Smed_v6_9618_0_1, dd_Smed_v6_9618_0_1, [RH, Score=172, Expect=2e-52]} {RNA1509_44835} {RNA1310_20921.1, RNA1509_44835} {RNA1509_44835, RNA815_12330} |
| 7. | MligTC455_42600 | 98 | 2.04 | Mlig455_040635 | Neo: - Age: - |
ZHX1-C8orf76 | 0.967 | 0.967 | - | - | - | - | - | Mlig455_040635 {REF} {Length: 1515} {TRANSSPLICED} {Pfam: Family of unknown function (DUF5588) [PF17826.3, score=64.3]} {Human: ENSG00000259305, ZHX1-C8orf76, ZHX1-C8orf76 readthrough, [RH, Score=65.5, Expect=1e-11]} {Mouse: ENSMUSG00000116094, 9130401M01Rik, RIKEN cDNA 9130401M01 gene, [Score=73.2, Expect=2e-14]; ENSMUSG00000101892, 9130401M01Rik, RIKEN cDNA 9130401M01 gene, [Score=73.2, Expect=2e-14]} {RNA1509_47858} {RNA1310_31212, RNA1509_47858} {RNA1509_47858, RNA815_15529} |
| 8. | MligTC455_18105 | 622 | 12.97 | Mlig455_027235 | Neo: - Age: - |
RNF144A | 0.964 | - | - | 0.964 | - | - | - | Mlig455_027235 {REF} {Length: 2276} {TRANSSPLICED} {Pfam: IBR domain, a half RING-finger domain [PF01485.23, score=57.7]} {Human: ENSG00000151692, RNF144A, ring finger protein 144A, [RH, Score=251, Expect=3e-81]} {Mouse: ENSMUSG00000020642, Rnf144a, ring finger protein 144A, [RH, Score=250, Expect=4e-81]; ENSMUSG00000038068, Rnf144b, ring finger protein 144B, [RH, Score=238, Expect=3e-76]} {Dmel: FBgn0053144, CG33144, [RH, Score=216, Expect=2e-62]} {Celegans: WBGene00020462, T12E12.1, Potential E3 ubiquitin-protein ligase ariadne-2, [Score=61.2, Expect=4e-10]} {Smed: dd_Smed_v6_7986_0_1, dd_Smed_v6_7986_0_1, [Score=73.6, Expect=3e-14]} {RNA1509_45575} {RNA1310_15378.1, RNA1509_45575} {RNA1509_45575, RNA815_22066} |
| 9. | MligTC455_26875 | 153 | 3.19 | Mlig455_041903 | Neo: - Age: - |
0.955 | 0.955 | - | - | - | - | - | Mlig455_041903 {REF} {Length: 1607} {TRANSSPLICED} {Pfam: Putative adhesin [PF13349.8, score=21.3]} {RNA1509_54351} {RNA1310_16408, RNA1509_54351} {RNA1509_54351, RNA815_7674} | |
| 10. | MligTC455_46729 | 214 | 4.45 | Mlig455_024617 | Neo: Int S/G2/M Age: - |
0.952 | 0.952 | - | - | - | - | - | Mlig455_024617 {REF} {Length: 2532} {TRANSSPLICED} {RNA1509_48335} {RNA1310_40748, RNA1509_48335} {RNA1509_48335, RNA815_27560} | |
| 11. | MligTC455_21218 | 254 | 5.29 | Mlig455_039115 | Neo: - Age: logFC(26M/2M)=0.413 |
0.951 | - | - | - | 0.951 | - | - | Mlig455_039115 {REF} {Length: 3877} {RNA1509_42019} {RNA1310_12333.1, RNA1509_42019} {RNA1509_42019, RNA815_15134} | |
| 12. | MligTC455_46018 | 256 | 5.34 | Mlig455_004929, Mlig455_019730 | Neo: - Age: - Region-enriched R2: 3.065/0.00629 |
OTX1 | 0.951 | 0.951 | - | - | - | - | - | Mlig455_004929 {REF} {Length: 2609} {Pfam: Homeodomain [PF00046.31, score=71.5]} {Human: ENSG00000115507, OTX1, orthodenticle homeobox 1, [RH, Score=135, Expect=5e-36]} {Mouse: ENSMUSG00000005917, Otx1, orthodenticle homeobox 1, [RH, Score=135, Expect=5e-36]} {Dmel: FBgn0004102, oc, ocelliless, [RH, Score=120, Expect=1e-29]} {Celegans: WBGene00006652, ttx-1, Homeodomain protein TTX-1, [RH, Score=118, Expect=6e-30]} {Smed: dd_Smed_v6_15516_0_1, dd_Smed_v6_15516_0_1, [RH, Score=90.1, Expect=1e-19]} {RNA1509_34770} {RNA1310_12365.2} {RNA815_33468} Mlig455_019730 {REF} {Length: 2056} {Pfam: Homeodomain [PF00046.31, score=73.3]} {Human: ENSG00000115507, OTX1, orthodenticle homeobox 1, [RH, Score=135, Expect=8e-36]} {Mouse: ENSMUSG00000005917, Otx1, orthodenticle homeobox 1, [RH, Score=135, Expect=6e-36]} {Dmel: FBgn0004102, oc, ocelliless, [RH, Score=121, Expect=8e-30]} {Celegans: WBGene00006652, ttx-1, Homeodomain protein TTX-1, [Score=122, Expect=4e-31]} {Smed: dd_Smed_v6_63359_0_2, dd_Smed_v6_63359_0_2, [Score=93.2, Expect=5e-23]} {RNA1509_34770} {RNA1310_12365.2} {RNA815_33468} |
Berezikov Lab - 2020-2021 © ERIBA