M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_30301

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_30301 831 17.30 Mlig455_007156

Neo: Neoblast, stringent

Age: Up-Down-Down

 SMC4 Mlig455_007156 {REF} {Length: 5128} {TRANSSPLICED} {Pfam: RecF/RecN/SMC N terminal domain [PF02463.21, score=234.4]; SMC proteins Flexible Hinge Domain [PF06470.15, score=84.9]; AAA domain, putative AbiEii toxin, Type IV TA system [PF13304.8, score=52.2]; AAA ATPase domain [PF13175.8, score=29.6]; AAA domain [PF13476.8, score=22.0]; P-loop containing region of AAA domain [PF13555.8, score=21.6]} {Human: ENSG00000113810, SMC4, structural maintenance of chromosomes 4, [RH, Score=664, Expect=0.0]} {Mouse: ENSMUSG00000034349, Smc4, structural maintenance of chromosomes 4, [RH, Score=670, Expect=0.0]} {Dmel: FBgn0015391, glu, gluon, [RH, Score=533, Expect=6e-164]} {Celegans: WBGene00004874, smc-4, Structural maintenance of chromosomes protein 4, [RH, Score=348, Expect=4e-98]} {Smed: dd_Smed_v6_5865_0_4, dd_Smed_v6_5865_0_4, [RH, Score=544, Expect=3e-169]} {RNA1509_15644, RNA1509_23132, RNA1509_3181, RNA1509_32936} {RNA1310_1138.1, RNA1509_15644, RNA1509_23132, RNA1509_3181, RNA1509_32936} {RNA1509_15644, RNA1509_23132, RNA1509_3181, RNA1509_32936, RNA815_2120}

Cumulative graph for MligTC455_30301

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.197 4.33 0.83533 1.00000
RegionR2 0.245 4.33 0.64031 0.97809
RegionR3 -0.398 4.33 0.35332 0.88900
RegionR4 0.325 4.33 0.42747 0.75574
RegionR5 0.542 4.33 0.11728 0.34064
RegionR6 0.453 4.33 0.26244 0.85041
RegionR7 -0.843 4.33 0.17504 0.76852
RegionR8 -0.129 4.33 0.85552 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.364 4.33 0.39146 1.00000
RegenerationR2 0.434 4.33 0.30882 0.74912
RegenerationR3 1.155 4.33 0.01432 0.21912
RegenerationR4 -0.001 4.33 0.99900 1.00000
RegenerationR5 0.359 4.33 0.36758 0.77829
RegenerationR6 1.142 4.33 0.00774 0.10752
RegenerationBL 1.118 4.33 0.02923 0.19003
RegenerationTP 0.161 4.33 0.81265 1.00000


Genes with expression patterns similar to MligTC455_30301

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_30301 831 17.3 Mlig455_007156

Neo: Neoblast, stringent

Age: Up-Down-Down

 SMC4 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_007156 {REF} {Length: 5128} {TRANSSPLICED} {Pfam: RecF/RecN/SMC N terminal domain [PF02463.21, score=234.4]; SMC proteins Flexible Hinge Domain [PF06470.15, score=84.9]; AAA domain, putative AbiEii toxin, Type IV TA system [PF13304.8, score=52.2]; AAA ATPase domain [PF13175.8, score=29.6]; AAA domain [PF13476.8, score=22.0]; P-loop containing region of AAA domain [PF13555.8, score=21.6]} {Human: ENSG00000113810, SMC4, structural maintenance of chromosomes 4, [RH, Score=664, Expect=0.0]} {Mouse: ENSMUSG00000034349, Smc4, structural maintenance of chromosomes 4, [RH, Score=670, Expect=0.0]} {Dmel: FBgn0015391, glu, gluon, [RH, Score=533, Expect=6e-164]} {Celegans: WBGene00004874, smc-4, Structural maintenance of chromosomes protein 4, [RH, Score=348, Expect=4e-98]} {Smed: dd_Smed_v6_5865_0_4, dd_Smed_v6_5865_0_4, [RH, Score=544, Expect=3e-169]} {RNA1509_15644, RNA1509_23132, RNA1509_3181, RNA1509_32936} {RNA1310_1138.1, RNA1509_15644, RNA1509_23132, RNA1509_3181, RNA1509_32936} {RNA1509_15644, RNA1509_23132, RNA1509_3181, RNA1509_32936, RNA815_2120}
2. MligTC455_10850 44 0.91 Mlig455_015903

Neo: -

Age: -

 SLC47A1 1.888 - 0.954 - 0.934 - - Mlig455_015903 {REF} {Length: 3108} {Pfam: MatE [PF01554.20, score=163.9]} {Human: ENSG00000142494, SLC47A1, solute carrier family 47 member 1, [Score=296, Expect=2e-92]} {Mouse: ENSMUSG00000010122, Slc47a1, solute carrier family 47, member 1, [RH, Score=319, Expect=3e-101]; ENSMUSG00000069855, Slc47a2, solute carrier family 47, member 2, [RH, Score=311, Expect=2e-98]} {Smed: dd_Smed_v6_11376_0_1, dd_Smed_v6_11376_0_1, [Score=392, Expect=6e-130]} {RNA1509_41969} {RNA1310_11520} {RNA815_9412}
3. MligTC455_53442 356 7.42 Mlig455_013869

Neo: -

Age: -

 NUP98 1.835 - 0.879 - 0.956 - - Mlig455_013869 {REF} {Length: 3557} {TRANSSPLICED} {Pfam: Nuclear protein 96 [PF12110.10, score=234.1]} {Human: ENSG00000110713, NUP98, nucleoporin 98, [RH, Score=223, Expect=6e-62]} {Mouse: ENSMUSG00000063550, Nup98, nucleoporin 98, [RH, Score=236, Expect=3e-65]} {Dmel: FBgn0039120, Nup98-96, Nucleoporin 98-96kD, [Score=213, Expect=1e-57]} {Celegans: WBGene00003796, npp-10, Nuclear pore complex protein Nup98-Nup96 Nuclear pore complex protein Nup98 Nuclear pore complex protein Nup96, [Score=117, Expect=8e-27]} {Smed: dd_Smed_v6_5347_0_2, dd_Smed_v6_5347_0_2, [Score=196, Expect=6e-52]} {RNA1509_11771} {RNA1310_8788, RNA1509_11771} {RNA1509_11771, RNA815_6858}
4. MligTC455_26336 865 18.01 Mlig455_045204

Neo: Int S/G2/M

Age: -

 DUS3L 1.77 - 0.817 - 0.953 - - Mlig455_045204 {REF} {Length: 4331} {Pfam: Dihydrouridine synthase (Dus) [PF01207.19, score=169.6]; Zinc finger C-x8-C-x5-C-x3-H type (and similar) [PF00642.26, score=23.1]; Exonuclease VII, large subunit [PF02601.17, score=19.7]} {Human: ENSG00000141994, DUS3L, dihydrouridine synthase 3 like, [RH, Score=465, Expect=4e-159]} {Mouse: ENSMUSG00000007603, Dus3l, dihydrouridine synthase 3-like (S. cerevisiae), [RH, Score=459, Expect=1e-153]} {Dmel: FBgn0032819, CG10463, [RH, Score=442, Expect=7e-148]} {Celegans: WBGene00021377, Y37E11B.5, tRNA-dihydrouridine(47) synthase [NAD(P)(+)], [RH, Score=366, Expect=4e-119]} {Smed: dd_Smed_v6_8477_0_1, dd_Smed_v6_8477_0_1, [Score=442, Expect=1e-148]} {RNA1509_51412} {RNA1310_18572.1} {RNA815_9098}
5. MligTC455_42019 607 12.65 Mlig455_014008

Neo: Int S/G2/M

Age: -

Region-enriched R4: 1.233/0.02621

 CEP57 1.75 - - - 0.794 - 0.956 Mlig455_014008 {REF} {Length: 2151} {TRANSSPLICED} {Pfam: Centrosome localisation domain of Cep57 [PF14073.8, score=46.2]} {Human: ENSG00000166037, CEP57, centrosomal protein 57, [RH, Score=48.9, Expect=4e-06]} {Mouse: ENSMUSG00000031922, Cep57, centrosomal protein 57, [RH, Score=50.8, Expect=2e-06]} {RNA1509_23343, RNA1509_25169} {RNA1310_18106.2, RNA1509_23343, RNA1509_25169} {RNA1509_23343, RNA1509_25169, RNA815_19709.2}
6. MligTC455_31299 699 14.57 Mlig455_068122

Neo: Neoblast, stringent

Age: Up-Down-Up

Regeneration-upregulated R6: 1.741

Regeneration-enriched R6: 1.741

 NUP160 1.728 - - - 0.951 0.777 - Mlig455_068122 {REF} {Length: 5376} {Pfam: Nucleoporin Nup120/160 [PF11715.10, score=42.4]} {Human: ENSG00000285358, NUP160, nucleoporin 160, [RH, Score=194, Expect=2e-49]; ENSG00000030066, NUP160, nucleoporin 160, [RH, Score=194, Expect=2e-49]} {Mouse: ENSMUSG00000051329, Nup160, nucleoporin 160, [RH, Score=198, Expect=1e-50]} {Dmel: FBgn0262647, Nup160, Nucleoporin 160kD, [RH, Score=147, Expect=5e-35]} {RNA1509_5873} {RNA1310_964, RNA1509_5873} {RNA1509_5873, RNA815_10041}
7. MligTC455_36743 568 11.84 Mlig455_000836

Neo: Germline

Age: Up-Down-Down

 SUN1 1.725 - 0.961 - - - 0.764 Mlig455_000836 {REF} {Length: 5450} {TRANSSPLICED} {Pfam: Sad1 / UNC-like C-terminal [PF07738.15, score=97.4]} {Human: ENSG00000164828, SUN1, Sad1 and UNC84 domain containing 1, [RH, Score=161, Expect=2e-40]; ENSG00000100242, SUN2, Sad1 and UNC84 domain containing 2, [RH, Score=159, Expect=1e-39]} {Mouse: ENSMUSG00000042524, Sun2, Sad1 and UNC84 domain containing 2, [RH, Score=157, Expect=2e-39]} {Dmel: FBgn0265003, koi, klaroid, [RH, Score=171, Expect=4e-43]} {Celegans: WBGene00006816, unc-84, Nuclear migration and anchoring protein unc-84, [RH, Score=107, Expect=2e-23]} {Smed: dd_Smed_v6_10787_0_1, dd_Smed_v6_10787_0_1, [RH, Score=150, Expect=5e-37]} {RNA1509_8446} {RNA1310_1369.1} {RNA815_825}
8. MligTC455_49974 170 3.53 Mlig455_036303

Neo: -

Age: -

 SDC4 1.712 - - - 0.749 0.963 - Mlig455_036303 {REF} {Length: 1024} {Pfam: Syndecan domain [PF01034.22, score=42.5]} {Human: ENSG00000124145, SDC4, syndecan 4, [Score=43.5, Expect=1e-05]} {Dmel: FBgn0010415, Sdc, Syndecan, [Score=47.4, Expect=5e-08]} {Celegans: WBGene00004749, sdn-1, Probable syndecan, [Score=50.4, Expect=3e-08]} {Smed: dd_Smed_v6_4546_0_1, dd_Smed_v6_4546_0_1, [Score=47.4, Expect=1e-07]} {RNA1310_19429.1} {RNA815_54299}
9. MligTC455_41147 2671 55.65 Mlig455_031647

Neo: Neoblast

Age: -

Regeneration-enriched BL: 1.690
Regeneration-enriched R6: 1.377

 HNRNPL 1.708 - - - 0.756 0.952 - Mlig455_031647 {REF} {Length: 3303} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF13893.8, score=111.4]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=78.4]; Occluded RNA-recognition motif [PF16842.7, score=39.0]; RRM-like domain [PF11835.10, score=26.0]} {Human: ENSG00000282947, HNRNPL, heterogeneous nuclear ribonucleoprotein L, [Score=206, Expect=5e-59]; ENSG00000104824, HNRNPL, heterogeneous nuclear ribonucleoprotein L, [Score=206, Expect=5e-59]} {Mouse: ENSMUSG00000015165, Hnrnpl, heterogeneous nuclear ribonucleoprotein L, [Score=204, Expect=1e-57]} {Dmel: FBgn0003435, sm, smooth, [Score=182, Expect=1e-50]} {Celegans: WBGene00016624, C44B7.2, [Score=157, Expect=2e-41]} {Smed: dd_Smed_v6_1327_0_1, dd_Smed_v6_1327_0_1, [Score=128, Expect=1e-31]} {RNA1509_14865, RNA1509_15213, RNA1509_3354, RNA1509_50536, RNA1509_7103} {RNA1310_5751.1, RNA1509_14865, RNA1509_15213, RNA1509_3354, RNA1509_50536, RNA1509_7103} {RNA1509_14865, RNA1509_15213, RNA1509_3354, RNA1509_50536, RNA1509_7103, RNA815_5809}
10. MligTC455_47491 302 6.29 Mlig455_030531

Neo: Irradiation

Age: Up-Down-Up, logFC(26M/2M)=0.489

Region-specific R5: 2.664

Region-enriched R5: 1.755/0.00006

 TUT7 1.705 - - - 0.970 - 0.735 Mlig455_030531 {REF} {Length: 3483} {TRANSSPLICED} {Pfam: TUTase nucleotidyltransferase domain [PF19088.2, score=36.1]} {Human: ENSG00000083223, TUT7, terminal uridylyl transferase 7, [Score=53.1, Expect=2e-06]} {RNA1509_22764} {RNA1310_6443.1} {RNA815_24098}
11. MligTC455_43952 230 4.79 Mlig455_068335

Neo: Int S/G2/M

Age: -

 NEMP1 1.662 - - - 0.957 - 0.705 Mlig455_068335 {REF} {Length: 1736} {Pfam: NEMP family [PF10225.11, score=60.7]} {Human: ENSG00000166881, NEMP1, nuclear envelope integral membrane protein 1, [Score=66.6, Expect=1e-12]} {Mouse: ENSMUSG00000043015, Nemp2, nuclear envelope integral membrane protein 2, [Score=55.1, Expect=9e-09]} {RNA1509_42654} {RNA1310_10680} {RNA815_32705}
12. MligTC455_45071 772 16.09 Mlig455_021825

Neo: -

Age: -

Region-enriched R2: 1.462/0.04952

 WDR13 0.972 - 0.972 - - - - Mlig455_021825 {REF} {Length: 1950} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=51.3]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=29.7]} {Human: ENSG00000101940, WDR13, WD repeat domain 13, [RH, Score=379, Expect=4e-126]} {Mouse: ENSMUSG00000031166, Wdr13, WD repeat domain 13, [RH, Score=372, Expect=2e-123]} {Dmel: FBgn0040066, wds, will die slowly, [Score=48.1, Expect=1e-05]} {Smed: dd_Smed_v6_5274_0_1, dd_Smed_v6_5274_0_1, [RH, Score=295, Expect=7e-94]} {RNA1509_13245} {RNA1310_11415.1, RNA1509_13245} {RNA1509_13245, RNA815_3970}
13. MligTC455_17621 97 2.02 Mlig455_042086

Neo: Int S/G2/M

Age: Up-Up-Down

 0.962 - 0.962 - - - - Mlig455_042086 {REF} {Length: 2172} {NoTransDecoderORF} {RNA1509_18737} {RNA1310_4779.2, RNA1509_18737} {RNA1509_18737, RNA815_11780}
14. MligTC455_19428 297 6.19 Mlig455_045314

Neo: -

Age: -

 OGA 0.96 - 0.960 - - - - Mlig455_045314 {REF} {Length: 4163} {Pfam: beta-N-acetylglucosaminidase [PF07555.15, score=260.4]} {Human: ENSG00000198408, OGA, O-GlcNAcase, [Score=364, Expect=2e-115]} {Mouse: ENSMUSG00000025220, Mgea5, meningioma expressed antigen 5 (hyaluronidase), [Score=361, Expect=3e-112]} {Dmel: FBgn0038870, Oga, O-GlcNAcase, [Score=356, Expect=2e-109]} {Celegans: WBGene00020596, oga-1, O-GlcNAc selective N-Acetyl-beta-D-glucosaminidase (O-GlcNAcase); OGA-1b, [Score=322, Expect=5e-98]} {Smed: dd_Smed_v6_7511_0_1, dd_Smed_v6_7511_0_1, [RH, Score=342, Expect=2e-104]} {RNA1509_16672} {RNA1310_4463} {RNA815_6837}
15. MligTC455_44357 499 10.4 Mlig455_026004

Neo: Germline

Age: -

Region-enriched R4: 2.644/0.00002
Region-enriched R5: 1.857/0.00374

 0.96 - 0.960 - - - - Mlig455_026004 {REF} {Length: 1484} {TRANSSPLICED} {RNA1509_8535} {RNA1310_21622, RNA1509_8535} {RNA1509_8535, RNA815_8801}
16. MligTC455_04540 408 8.49 Mlig455_053630

Neo: Irradiation

Age: -

Region-specific R4: 3.892

Region-enriched R4: 2.125/0.00354

 0.957 - 0.957 - - - - Mlig455_053630 {REF} {Length: 2503} {RNA1509_25806} {RNA1310_27297, RNA1509_25806} {RNA1509_25806, RNA815_14462}
17. MligTC455_38225 21 0.44 Mlig455_048908

Neo: Int S/G2/M

Age: Up-Down-Down

 0.957 - 0.957 - - - - Mlig455_048908 {REF} {Length: 4899} {Pfam: Receptor family ligand binding region [PF01094.30, score=18.5]} {RNA1509_5478} {RNA1310_1978} {RNA815_545}
18. MligTC455_10139 49 1.02 Mlig455_045741

Neo: Germline

Age: -

 0.956 - 0.956 - - - - Mlig455_045741 {REF} {Length: 2117} {RNA1509_6409} {RNA1310_36666} {RNA815_7594.1}
19. MligTC455_07424 29 0.6 Mlig455_052614

Neo: -

Age: -

 0.955 - 0.955 - - - - Mlig455_052614 {REF} {Length: 721} {RNA1310_31171}
20. MligTC455_20447 411 8.57 Mlig455_017759

Neo: -

Age: -

 SLC2A3 0.955 - - - - 0.955 - Mlig455_017759 {REF} {Length: 2994} {Pfam: Sugar (and other) transporter [PF00083.26, score=369.0]; Major Facilitator Superfamily [PF07690.18, score=71.5]} {Human: ENSG00000059804, SLC2A3, solute carrier family 2 member 3, [RH, Score=349, Expect=1e-114]; ENSG00000117394, SLC2A1, solute carrier family 2 member 1, [RH, Score=345, Expect=3e-113]; ENSG00000173262, SLC2A14, solute carrier family 2 member 14, [RH, Score=342, Expect=9e-112]} {Mouse: ENSMUSG00000028645, Slc2a1, solute carrier family 2 (facilitated glucose transporter), member 1, [RH, Score=343, Expect=1e-112]} {Dmel: FBgn0264574, Glut1, Glucose transporter 1, [RH, Score=409, Expect=1e-136]} {Celegans: WBGene00019207, fgt-1, Facilitated glucose transporter protein 1, [RH, Score=296, Expect=1e-94]} {Smed: dd_Smed_v6_8244_0_1, dd_Smed_v6_8244_0_1, [RH, Score=390, Expect=3e-131]} {RNA1509_33283} {RNA1310_5985.1, RNA1509_33283} {RNA1509_33283, RNA815_5376}
21. MligTC455_26234 66 1.37 Mlig455_048860

Neo: Irradiation

Age: Down-Up-Down, logFC(26M/2M)=-1.072

 0.955 - 0.955 - - - - Mlig455_048860 {REF} {Length: 5744} {Pfam: DDE superfamily endonuclease [PF13358.8, score=48.3]} {Smed: dd_Smed_v6_5882_0_1, dd_Smed_v6_5882_0_1, [RH, Score=154, Expect=1e-43]} {RNA1509_42532} {RNA1310_1190} {RNA815_22519}
22. MligTC455_10989 155 3.22 Mlig455_064790

Neo: Germline

Age: -

Region-enriched R4: 3.654/0.00038

 0.954 - 0.954 - - - - Mlig455_064790 {REF} {Length: 848} {RNA1509_34670} {RNA1310_46959} {RNA815_28830}
23. MligTC455_19219 189 3.93 Mlig455_060400

Neo: -

Age: logFC(26M/2M)=0.407

 0.954 - - - 0.954 - - Mlig455_060400 {REF} {Length: 2170} {Pfam: EF-hand domain pair [PF13499.8, score=79.6]; EF-hand domain [PF13405.8, score=63.7]; EF-hand domain pair [PF13833.8, score=62.4]; EF hand [PF00036.34, score=57.3]; EF hand [PF13202.8, score=40.5]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=30.2]} {Dmel: FBgn0026144, CBP, sarcoplasmic calcium-binding protein, [Score=58.9, Expect=1e-09]} {Smed: dd_Smed_v6_1010_0_1, dd_Smed_v6_1010_0_1, [RH, Score=412, Expect=2e-143]} {RNA1509_14509} {RNA1310_13479, RNA1509_14509} {RNA1509_14509, RNA815_4591.1}
24. MligTC455_28227 434 9.05 Mlig455_045560

Neo: -

Age: -

Region-enriched R4: 1.181/0.02677

 CDC27 0.954 - 0.954 - - - - Mlig455_045560 {REF} {Length: 5056} {Pfam: Tetratricopeptide repeat [PF07719.19, score=96.6]; Tetratricopeptide repeat [PF00515.30, score=94.4]; Tetratricopeptide repeat [PF13181.8, score=82.9]; Tetratricopeptide repeat [PF13424.8, score=72.1]; Tetratricopeptide repeat [PF13428.8, score=70.7]; Tetratricopeptide repeat [PF14559.8, score=66.3]; TPR repeat [PF13414.8, score=59.0]; Tetratricopeptide repeat [PF13432.8, score=55.4]; Anaphase-promoting complex, cyclosome, subunit 3 [PF12895.9, score=47.7]; Tetratricopeptide repeat [PF13371.8, score=38.2]; Tetratricopeptide repeat [PF13431.8, score=38.0]; Tetratricopeptide repeat [PF13174.8, score=31.3]; Tetratricopeptide repeat [PF13429.8, score=25.1]; Tetratricopeptide repeat [PF13176.8, score=23.3]} {Human: ENSG00000004897, CDC27, cell division cycle 27, [RH, Score=405, Expect=1e-124]} {Mouse: ENSMUSG00000020687, Cdc27, cell division cycle 27, [RH, Score=402, Expect=1e-123]} {Dmel: FBgn0012058, Cdc27, Cell division cycle 27, [RH, Score=311, Expect=4e-90]} {Celegans: WBGene00003132, mat-1, Cell division cycle protein 27 homolog, [RH, Score=200, Expect=4e-53]} {Smed: dd_Smed_v6_7556_0_1, dd_Smed_v6_7556_0_1, [RH, Score=212, Expect=1e-56]} {RNA1509_6440} {RNA1310_2229} {RNA815_864}
25. MligTC455_14036 33 0.69 Mlig455_059133

Neo: -

Age: -

Region-enriched R2: 6.942/0.00135

 GRIK2 0.953 - 0.953 - - - - Mlig455_059133 {REF} {Length: 360} {TRANSSPLICED} {Pfam: Ligand-gated ion channel [PF00060.28, score=91.4]; Receptor family ligand binding region [PF01094.30, score=55.6]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=50.2]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=31.2]; Iron-containing alcohol dehydrogenase [PF13685.8, score=21.6]} {Human: ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=167, Expect=5e-42]} {Mouse: ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=166, Expect=8e-42]} {Dmel: FBgn0038837, CG3822, [Score=171, Expect=1e-43]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [Score=129, Expect=1e-30]} {Smed: dd_Smed_v6_31078_0_1, dd_Smed_v6_31078_0_1, [RH, Score=273, Expect=6e-84]}
26. MligTC455_19406 693 14.43 Mlig455_021525

Neo: Germline

Age: Up-Down-Down

Region-specific R4: 2.557

Region-enriched R4: 1.438/0.00080

 FKBP4 0.953 - 0.953 - - - - Mlig455_021525 {REF} {Length: 1969} {TRANSSPLICED} {Pfam: FKBP-type peptidyl-prolyl cis-trans isomerase [PF00254.30, score=58.2]; Tetratricopeptide repeat [PF00515.30, score=28.7]; Tetratricopeptide repeat [PF07719.19, score=24.2]} {Human: ENSG00000004478, FKBP4, FK506 binding protein 4, [Score=221, Expect=2e-65]} {Mouse: ENSMUSG00000030357, Fkbp4, FK506 binding protein 4, [Score=222, Expect=8e-66]} {Dmel: FBgn0029174, FKBP59, FK506-binding protein FKBP59, [Score=158, Expect=2e-42]} {Celegans: WBGene00001431, fkb-6, Peptidylprolyl isomerase, [Score=149, Expect=2e-39]} {Smed: dd_Smed_v6_1921_0_1, dd_Smed_v6_1921_0_1, [Score=171, Expect=1e-47]} {RNA1509_11025, RNA1509_29794} {RNA1310_14091, RNA1509_11025} {RNA1509_11025, RNA815_5078}
27. MligTC455_30925 14 0.29 Mlig455_039651

Neo: Int S/G2/M

Age: -

 0.953 - 0.953 - - - - Mlig455_039651 {REF} {Length: 1940} {RNA1509_24858} {RNA1310_11282.1} {RNA815_36474}
28. MligTC455_35821 426 8.88 Mlig455_024223

Neo: -

Age: Up-Down-Down

 EIF4E3 0.953 - - - - - 0.953 Mlig455_024223 {REF} {Length: 4966} {TRANSSPLICED} {Pfam: Eukaryotic initiation factor 4E [PF01652.20, score=107.1]} {Human: ENSG00000163412, EIF4E3, eukaryotic translation initiation factor 4E family member 3, [RH, Score=145, Expect=5e-39]} {Mouse: ENSMUSG00000093661, Eif4e3, eukaryotic translation initiation factor 4E member 3, [RH, Score=140, Expect=1e-37]} {Celegans: WBGene00002062, ife-4, Eukaryotic translation initiation factor 4E-4, [Score=79.0, Expect=2e-16]} {Smed: dd_Smed_v6_20535_0_1, dd_Smed_v6_20535_0_1, [Score=47.4, Expect=1e-05]} {RNA1509_12095, RNA1509_18845, RNA1509_25476, RNA1509_36183, RNA1509_44402, RNA1509_50060, RNA1509_51725, RNA1509_54981} {RNA1310_8157, RNA1509_12095, RNA1509_18845, RNA1509_36183, RNA1509_44402, RNA1509_50060, RNA1509_51725, RNA1509_54981} {RNA1509_12095, RNA1509_18845, RNA1509_36183, RNA1509_44402, RNA1509_50060, RNA1509_51725, RNA1509_54981, RNA815_1874}
29. MligTC455_50231 291 6.05 Mlig455_035326

Neo: Germline

Age: Up-Down-Down, logFC(26M/2M)=-0.610

 ENTPD6 0.952 - 0.952 - - - - Mlig455_035326 {REF} {Length: 2303} {Pfam: GDA1/CD39 (nucleoside phosphatase) family [PF01150.19, score=136.3]} {Human: ENSG00000197586, ENTPD6, ectonucleoside triphosphate diphosphohydrolase 6 (putative), [Score=128, Expect=1e-31]; ENSG00000187097, ENTPD5, ectonucleoside triphosphate diphosphohydrolase 5, [Score=127, Expect=1e-31]} {Mouse: ENSMUSG00000033068, Entpd6, ectonucleoside triphosphate diphosphohydrolase 6, [Score=124, Expect=1e-30]; ENSMUSG00000021236, Entpd5, ectonucleoside triphosphate diphosphohydrolase 5, [Score=124, Expect=1e-30]} {Dmel: FBgn0024947, NTPase, [Score=124, Expect=2e-30]} {Celegans: WBGene00010697, uda-1, Nucleoside-diphosphatase uda-1, [Score=98.6, Expect=6e-22]} {Smed: dd_Smed_v6_15646_0_1, dd_Smed_v6_15646_0_1, [Score=125, Expect=2e-31]} {RNA1509_46120, RNA1509_6139} {RNA1310_17314, RNA1509_46120} {RNA1509_46120, RNA815_6840.1}
30. MligTC455_53310 194 4.04 Mlig455_046031, Mlig455_055213

Neo: -

Age: -

 WARS 0.952 - - - 0.952 - -

Mlig455_046031 {REF} {Length: 2931} {TRANSSPLICED} {tRNA: Val(AAC),pseudo, score=25.6} {Pfam: tRNA synthetases class I (W and Y) [PF00579.27, score=79.1]} {Human: ENSG00000140105, WARS, tryptophanyl-tRNA synthetase, [RH, Score=612, Expect=0.0]} {Mouse: ENSMUSG00000021266, Wars, tryptophanyl-tRNA synthetase, [RH, Score=606, Expect=0.0]} {Dmel: FBgn0010803, TrpRS, Tryptophanyl-tRNA synthetase, [RH, Score=533, Expect=0.0]} {Celegans: WBGene00006945, wars-1, Tryptophanyl(W) Amino-acyl tRNA Synthetase; Tryptophanyl-tRNA synthetase (Cytosolic), [RH, Score=510, Expect=0.0]} {Smed: dd_Smed_v6_2435_0_1, dd_Smed_v6_2435_0_1, [RH, Score=434, Expect=6e-146]} {RNA1509_47035} {RNA1310_16401.1} {RNA815_9552}

Mlig455_055213 {REF} {Length: 2481} {TRANSSPLICED} {tRNA: Val(CAC),pseudo, score=21.4} {Pfam: tRNA synthetases class I (W and Y) [PF00579.27, score=81.3]} {Human: ENSG00000140105, WARS, tryptophanyl-tRNA synthetase, [RH, Score=612, Expect=0.0]} {Mouse: ENSMUSG00000021266, Wars, tryptophanyl-tRNA synthetase, [RH, Score=607, Expect=0.0]} {Dmel: FBgn0010803, TrpRS, Tryptophanyl-tRNA synthetase, [RH, Score=533, Expect=0.0]} {Celegans: WBGene00006945, wars-1, Tryptophanyl(W) Amino-acyl tRNA Synthetase; Tryptophanyl-tRNA synthetase (Cytosolic), [RH, Score=512, Expect=0.0]} {Smed: dd_Smed_v6_2435_0_1, dd_Smed_v6_2435_0_1, [RH, Score=437, Expect=5e-147]} {RNA1509_47035} {RNA1310_16401.1} {RNA815_9552}
31. MligTC455_06585 41 0.85 Mlig455_002312

Neo: -

Age: -

 0.951 - 0.951 - - - - Mlig455_002312 {REF} {Length: 824} {RNA1310_16714.1} {RNA815_6820}
32. MligTC455_24191 167 3.47 Mlig455_036990

Neo: -

Age: logFC(26M/2M)=0.434

Region-enriched R5: 2.098/0.03929

 GCKR 0.951 - 0.951 - - - - Mlig455_036990 {REF} {Length: 3658} {TRANSSPLICED} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=29.6]} {Human: ENSG00000084734, GCKR, glucokinase regulator, [RH, Score=150, Expect=6e-37]} {Mouse: ENSMUSG00000059434, Gckr, glucokinase regulatory protein, [RH, Score=146, Expect=7e-36]} {Dmel: FBgn0259789, zld, zelda, [Score=54.7, Expect=6e-07]} {Celegans: WBGene00003847, blmp-1, B lymphocyte-induced maturation protein 1 homolog, [Score=65.1, Expect=2e-10]} {Smed: dd_Smed_v6_5558_0_1, dd_Smed_v6_5558_0_1, [RH, Score=75.5, Expect=3e-14]} {RNA1509_51386} {RNA1310_15402} {RNA815_4323.1}
33. MligTC455_33133 546 11.36 Mlig455_061682

Neo: Neoblast, stringent

Age: -

 DNAJC9 0.951 - - - 0.951 - - Mlig455_061682 {REF} {Length: 2434} {TRANSSPLICED} {Pfam: DnaJ domain [PF00226.33, score=71.7]} {Human: ENSG00000213551, DNAJC9, DnaJ heat shock protein family (Hsp40) member C9, [RH, Score=197, Expect=1e-61]} {Mouse: ENSMUSG00000021811, Dnajc9, DnaJ heat shock protein family (Hsp40) member C9, [RH, Score=199, Expect=3e-62]} {Dmel: FBgn0037878, CG6693, [RH, Score=168, Expect=4e-50]} {Celegans: WBGene00001041, dnj-23, DNaJ domain (Prokaryotic heat shock protein), [RH, Score=140, Expect=2e-40]} {Smed: dd_Smed_v6_7703_0_1, dd_Smed_v6_7703_0_1, [RH, Score=155, Expect=5e-46]} {RNA1509_13475, RNA1509_28841} {RNA1310_18119, RNA1509_28841} {RNA1509_28841, RNA815_4493}
34. MligTC455_38226 12 0.25 Mlig455_053130

Neo: -

Age: -

 0.951 - 0.951 - - - - Mlig455_053130 {REF} {Length: 1394} {Pfam: Integrase zinc binding domain [PF17921.3, score=52.9]; Integrase core domain [PF00665.28, score=50.6]; H2C2 zinc finger [PF09337.12, score=21.5]} {Smed: dd_Smed_v6_20599_0_1, dd_Smed_v6_20599_0_1, [Score=96.3, Expect=3e-22]} {RNA1509_5478} {RNA1310_2248} {RNA815_545}
35. MligTC455_42592 350 7.3 Mlig455_032883, Mlig455_041988

Neo: -

Age: -

 TAGAP 0.951 - - - - 0.951 -

Mlig455_032883 {REF} {Length: 399} {NoTransDecoderORF} {RNA1509_51232} {RNA1310_6564} {RNA815_17249.1}

Mlig455_041988 {REF} {Length: 3024} {TRANSSPLICED} {Pfam: RhoGAP domain [PF00620.29, score=39.5]} {Human: ENSG00000164691, TAGAP, T cell activation RhoGTPase activating protein, [Score=51.6, Expect=2e-06]} {Celegans: WBGene00007064, 2RSSE.1, [Score=102, Expect=5e-24]} {Smed: dd_Smed_v6_6099_0_1, dd_Smed_v6_6099_0_1, [Score=143, Expect=3e-37]} {RNA1509_12266} {RNA1310_6564, RNA1509_12266} {RNA1509_12266, RNA815_7471}
36. MligTC455_48279 554 11.54 Mlig455_020234

Neo: Irradiation

Age: -

 PICALM 0.951 - 0.951 - - - - Mlig455_020234 {REF} {Length: 3235} {Pfam: ANTH domain [PF07651.18, score=205.4]; ENTH domain [PF01417.22, score=40.3]} {Human: ENSG00000073921, PICALM, phosphatidylinositol binding clathrin assembly protein, [Score=420, Expect=1e-138]} {Mouse: ENSMUSG00000039361, Picalm, phosphatidylinositol binding clathrin assembly protein, [Score=417, Expect=7e-137]} {Dmel: FBgn0086372, lap, like-AP180, [Score=391, Expect=8e-127]} {Celegans: WBGene00006751, unc-11, Phosphatidylinositol-binding clathrin assembly protein unc-11, [RH, Score=366, Expect=1e-117]} {Smed: dd_Smed_v6_1463_0_1, dd_Smed_v6_1463_0_1, [Score=401, Expect=2e-131]} {RNA1509_47050, RNA1509_55306} {RNA1310_7658.1, RNA1509_47050} {RNA1509_47050, RNA815_17321}
37. MligTC455_13448 67 1.4 Mlig455_018474

Neo: Germline

Age: Up-Down-Down, logFC(26M/2M)=-0.428

Region-enriched R4: 2.665/0.02244

 0.95 - 0.950 - - - - Mlig455_018474 {REF} {Length: 1668} {RNA1509_30684} {RNA1310_16536} {RNA815_6891.2}
38. MligTC455_16100 59 1.23 Mlig455_039055

Neo: Int S/G2/M

Age: -

 0.95 - 0.950 - - - - Mlig455_039055 {REF} {Length: 495} {RNA1310_49948} {RNA815_25999}
39. MligTC455_21157 20 0.41 Mlig455_042471

Neo: -

Age: -

 0.95 - 0.950 - - - - Mlig455_042471 {REF} {Length: 611} {RNA1509_39040} {RNA1310_24363} {RNA815_4579}
40. MligTC455_36817 251 5.23 Mlig455_028298, Mlig455_063440, Mlig455_063473

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.569

 ANK3, HACE1 0.95 - 0.950 - - - -

Mlig455_028298 {REF} {Length: 74} {NoTransDecoderORF} {RNA1509_52177} {RNA1310_32843.2} {RNA815_55148.1}

Mlig455_063440 {REF} {Length: 6119} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=102.0]; Ankyrin repeats (many copies) [PF13637.8, score=76.6]; Ankyrin repeats (many copies) [PF13857.8, score=56.0]; Ankyrin repeat [PF13606.8, score=51.3]; Ankyrin repeat [PF00023.32, score=25.2]} {Human: ENSG00000151150, ANK3, ankyrin 3, [Score=59.3, Expect=6e-08]; ENSG00000085382, HACE1, HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1, [Score=59.3, Expect=4e-08]} {Mouse: ENSMUSG00000052331, Ankrd44, ankyrin repeat domain 44, [Score=59.7, Expect=2e-08]; ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=58.9, Expect=5e-08]; ENSMUSG00000038822, Hace1, HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1, [Score=58.5, Expect=6e-08]} {Dmel: FBgn0016920, nompC, no mechanoreceptor potential C, [Score=53.1, Expect=2e-06]} {Celegans: WBGene00006616, trp-4, TRP (Transient receptor potential) channel family, [Score=84.7, Expect=4e-16]} {Smed: dd_Smed_v6_13721_0_1, dd_Smed_v6_13721_0_1, [Score=66.6, Expect=9e-11]} {RNA1509_30268} {RNA1310_2381} {RNA815_861}

Mlig455_063473 {REF} {Length: 5762} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=102.2]; Ankyrin repeats (many copies) [PF13637.8, score=77.1]; Ankyrin repeats (many copies) [PF13857.8, score=56.4]; Ankyrin repeat [PF13606.8, score=51.8]; Ankyrin repeat [PF00023.32, score=25.4]} {Human: ENSG00000085382, HACE1, HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1, [Score=59.3, Expect=5e-08]; ENSG00000151150, ANK3, ankyrin 3, [Score=58.9, Expect=7e-08]} {Mouse: ENSMUSG00000052331, Ankrd44, ankyrin repeat domain 44, [Score=59.7, Expect=2e-08]; ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=58.5, Expect=6e-08]; ENSMUSG00000038822, Hace1, HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1, [Score=58.2, Expect=6e-08]} {Dmel: FBgn0016920, nompC, no mechanoreceptor potential C, [Score=52.8, Expect=3e-06]} {Celegans: WBGene00006616, trp-4, TRP (Transient receptor potential) channel family, [Score=84.7, Expect=4e-16]} {Smed: dd_Smed_v6_13721_0_1, dd_Smed_v6_13721_0_1, [Score=66.6, Expect=9e-11]} {RNA1509_30268} {RNA1310_2381} {RNA815_861}
41. MligTC455_42441 943 19.65 Mlig455_067966

Neo: Neoblast, stringent

Age: -

 BUB1B 0.95 - - - 0.950 - - Mlig455_067966 {REF} {Length: 4977} {Pfam: Mad3/BUB1 homology region 1 [PF08311.14, score=116.8]; Protein kinase domain [PF00069.27, score=31.3]} {Human: ENSG00000156970, BUB1B, BUB1 mitotic checkpoint serine/threonine kinase B, [Score=118, Expect=3e-26]} {Mouse: ENSMUSG00000027379, Bub1, BUB1, mitotic checkpoint serine/threonine kinase, [RH, Score=112, Expect=2e-24]} {Dmel: FBgn0031696, Bub1, Bub1 kinase, [RH, Score=103, Expect=1e-21]} {Celegans: WBGene00000275, bub-1, Mitotic checkpoint serine/threonine-protein kinase bub-1, [RH, Score=71.2, Expect=4e-12]} {Smed: dd_Smed_v6_5366_0_2, dd_Smed_v6_5366_0_2, [Score=50.4, Expect=3e-07]} {RNA1509_9302} {RNA1310_672.1} {RNA815_6919}
42. MligTC455_43569 435 9.06 Mlig455_028984

Neo: -

Age: -

 ASTE1 0.95 - - - - 0.950 - Mlig455_028984 {REF} {Length: 2681} {Pfam: XPG domain containing [PF12813.9, score=62.1]} {Human: ENSG00000034533, ASTE1, asteroid homolog 1, [Score=112, Expect=7e-25]} {Mouse: ENSMUSG00000032567, Aste1, asteroid homolog 1, [Score=111, Expect=9e-25]} {Dmel: FBgn0015905, ast, asteroid, [Score=88.6, Expect=1e-17]} {Smed: dd_Smed_v6_12690_0_1, dd_Smed_v6_12690_0_1, [Score=141, Expect=6e-35]} {RNA1509_49240} {RNA1310_10993.1} {RNA815_4468.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA