M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_31119

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_31119 17 0.36 Mlig455_041124

Neo: -

Age: -

 Mlig455_041124 {REF} {Length: 4159} {TRANSSPLICED} {RNA1310_20292} {RNA815_18212}

Cumulative graph for MligTC455_31119

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.837 0.882 0.99998 1.00000
RegionR2 -1.244 0.882 0.99989 1.00000
RegionR3 -0.215 0.882 0.99998 1.00000
RegionR4 0.898 0.882 0.99996 1.00000
RegionR5 0.102 0.882 0.99999 1.00000
RegionR6 -0.485 0.882 0.99996 1.00000
RegionR7 -0.229 0.882 1.00000 1.00000
RegionR8 0.336 0.882 0.99997 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.264 0.882 1.00000 1.00000
RegenerationR2 3.138 0.882 0.04922 0.36639
RegenerationR3 2.808 0.882 0.23490 0.66902
RegenerationR4 2.349 0.882 0.20831 0.65526
RegenerationR5 2.374 0.882 0.17412 0.60343
RegenerationR6 3.25 0.882 0.16491 0.49496
RegenerationBL 1.349 0.882 0.50231 0.86646
RegenerationTP -0.803 0.882 0.99996 1.00000


Genes with expression patterns similar to MligTC455_31119

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_31119 17 0.36 Mlig455_041124

Neo: -

Age: -

 2 - - - 1.000 1.000 - Mlig455_041124 {REF} {Length: 4159} {TRANSSPLICED} {RNA1310_20292} {RNA815_18212}
2. MligTC455_22302 14 0.29 Mlig455_008929

Neo: -

Age: -

 TRPV6 0.977 - - - - 0.977 - Mlig455_008929 {REF} {Length: 3920} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=49.2]; Ion transport protein [PF00520.33, score=42.9]; Ankyrin repeats (many copies) [PF13857.8, score=36.7]; Ankyrin repeat [PF13606.8, score=36.3]; Ankyrin repeat [PF00023.32, score=27.5]; Ankyrin repeats (many copies) [PF13637.8, score=26.0]; Polycystin cation channel [PF08016.14, score=20.2]} {Human: ENSG00000165125, TRPV6, transient receptor potential cation channel subfamily V member 6, [Score=204, Expect=3e-54]; ENSG00000276971, TRPV6, transient receptor potential cation channel subfamily V member 6, [Score=203, Expect=7e-54]} {Mouse: ENSMUSG00000029868, Trpv6, transient receptor potential cation channel, subfamily V, member 6, [Score=204, Expect=4e-54]} {Dmel: FBgn0086693, iav, inactive, [Score=540, Expect=6e-173]} {Celegans: WBGene00003889, osm-9, Olfactory channel, [Score=490, Expect=6e-156]} {Smed: dd_Smed_v6_28914_0_1, dd_Smed_v6_28914_0_1, [Score=493, Expect=4e-158]} {RNA1310_110441}
3. MligTC455_46729 214 4.45 Mlig455_024617

Neo: Int S/G2/M

Age: -

 0.971 - - - - 0.971 - Mlig455_024617 {REF} {Length: 2532} {TRANSSPLICED} {RNA1509_48335} {RNA1310_40748, RNA1509_48335} {RNA1509_48335, RNA815_27560}
4. MligTC455_09261 26 0.54 Mlig455_009012, Mlig455_016551, Mlig455_016607

Neo: -

Age: Up-Down-Down

 TXNDC16 0.965 - - - - 0.965 -

Mlig455_009012 {REF} {Length: 3149} {Pfam: Thioredoxin [PF00085.22, score=49.1]} {Human: ENSG00000087301, TXNDC16, thioredoxin domain containing 16, [RH, Score=57.0, Expect=1e-07]} {Dmel: FBgn0036579, CG5027, [Score=50.4, Expect=5e-06]} {Celegans: WBGene00003963, pdi-2, Protein disulfide-isomerase 2, [Score=50.1, Expect=6e-06]} {RNA1509_55756} {RNA1310_28093, RNA1509_55756} {RNA1509_55756, RNA815_21123}

Mlig455_016551 {REF} {Length: 1631} {Pfam: Thioredoxin [PF00085.22, score=50.4]} {Human: ENSG00000087301, TXNDC16, thioredoxin domain containing 16, [RH, Score=56.6, Expect=9e-08]} {Dmel: FBgn0036579, CG5027, [Score=50.1, Expect=4e-06]} {Celegans: WBGene00022836, ZK973.11, [Score=48.5, Expect=8e-06]} {RNA1509_55756} {RNA1310_28093} {RNA815_31908}

Mlig455_016607 {REF} {Length: 2795} {Pfam: Thioredoxin [PF00085.22, score=49.6]} {Human: ENSG00000087301, TXNDC16, thioredoxin domain containing 16, [Score=57.0, Expect=1e-07]} {Dmel: FBgn0036579, CG5027, [Score=50.4, Expect=4e-06]} {Celegans: WBGene00022836, ZK973.11, [Score=49.7, Expect=5e-06]} {RNA1509_55756} {RNA1310_40280} {RNA815_21123}
5. MligTC455_29335 36 0.75 Mlig455_019697

Neo: -

Age: -

 DOCK11 0.963 - - - - 0.963 - Mlig455_019697 {REF} {Length: 2704} {Pfam: C2 domain in Dock180 and Zizimin proteins [PF14429.8, score=99.4]; Domain of unknown function (DUF3398) [PF11878.10, score=31.7]} {Human: ENSG00000147251, DOCK11, dedicator of cytokinesis 11, [Score=200, Expect=3e-52]; ENSG00000135905, DOCK10, dedicator of cytokinesis 10, [Score=196, Expect=5e-51]} {Mouse: ENSMUSG00000031093, Dock11, dedicator of cytokinesis 11, [Score=201, Expect=8e-53]; ENSMUSG00000038608, Dock10, dedicator of cytokinesis 10, [Score=193, Expect=3e-50]} {Dmel: FBgn0260486, Ziz, Zizimin, [Score=154, Expect=7e-38]} {Celegans: WBGene00009065, F22G12.5, [Score=107, Expect=3e-23]} {Smed: dd_Smed_v6_2660_0_5, dd_Smed_v6_2660_0_5, [Score=127, Expect=1e-29]} {RNA1509_10943} {RNA1310_527.1} {RNA815_3082}
6. MligTC455_27390 33 0.7 Mlig455_015534

Neo: -

Age: -

 0.958 - - - 0.958 - - Mlig455_015534 {REF} {Length: 2078} {RNA1509_35400} {RNA1310_41687} {RNA815_19078}
7. MligTC455_16000 46 0.97 Mlig455_015523

Neo: -

Age: -

 0.957 - - - 0.957 - - Mlig455_015523 {REF} {Length: 2952}
8. MligTC455_14961 39 0.82 Mlig455_048867

Neo: -

Age: -

 0.956 - - - 0.956 - - Mlig455_048867 {REF} {Length: 979} {NoTransDecoderORF} {RNA1310_98124}
9. MligTC455_09196 28 0.59 Mlig455_046836

Neo: -

Age: -

 0.955 - - - 0.955 - - Mlig455_046836 {REF} {Length: 3502} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=187.1]} {Mouse: ENSMUSG00000028008, Asic5, acid-sensing (proton-gated) ion channel family member 5, [Score=55.1, Expect=2e-07]} {Celegans: WBGene00006832, unc-105, Degenerin-like protein unc-105, [Score=62.4, Expect=9e-10]} {Smed: dd_Smed_v6_8949_0_1, dd_Smed_v6_8949_0_1, [Score=75.1, Expect=6e-14]} {RNA1509_28410} {RNA1310_44135} {RNA815_33213}
10. MligTC455_51716 160 3.34 Mlig455_070217

Neo: -

Age: Up-Down-Down

 0.955 - - - - 0.955 - Mlig455_070217 {REF} {Length: 2635} {RNA1509_54215} {RNA1310_88667, RNA1509_54215} {RNA1509_54215, RNA815_36352}
11. MligTC455_43445 98 2.05 Mlig455_043288

Neo: -

Age: -

 0.954 - - - 0.954 - - Mlig455_043288 {REF} {Length: 1770} {TRANSSPLICED} {Pfam: NICE-3 protein [PF07406.13, score=86.6]} {Dmel: FBgn0034172, CG6665, [Score=57.8, Expect=2e-09]} {RNA1509_24375} {RNA1310_15514.2} {RNA815_13288}
12. MligTC455_00320 21 0.44 Mlig455_036225

Neo: -

Age: -

 0.952 - - - 0.952 - - Mlig455_036225 {REF} {Length: 791} {RNA1509_49336} {RNA1310_7117.1} {RNA815_18615}
13. MligTC455_49283 671 13.99 Mlig455_001528, Mlig455_046576

Neo: Int S/G2/M

Age: -

Region-enriched R2: 1.859/0.02944

 MMACHC 0.952 - - - - 0.952 -

Mlig455_001528 {REF} {Length: 1838} {TRANSSPLICED} {Pfam: Methylmalonic aciduria and homocystinuria type C family [PF16690.7, score=156.7]} {Human: ENSG00000132763, MMACHC, methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria, [RH, Score=130, Expect=1e-35]} {Mouse: ENSMUSG00000028690, Mmachc, methylmalonic aciduria cblC type, with homocystinuria, [RH, Score=130, Expect=4e-36]} {Smed: dd_Smed_v6_8584_0_1, dd_Smed_v6_8584_0_1, [RH, Score=114, Expect=3e-30]} {RNA1509_29990, RNA1509_42294} {RNA1310_36622, RNA1509_29990, RNA1509_42294} {RNA1509_29990, RNA1509_42294, RNA815_18456}

Mlig455_046576 {REF} {Length: 1840} {TRANSSPLICED} {Pfam: Methylmalonic aciduria and homocystinuria type C family [PF16690.7, score=157.4]} {Human: ENSG00000132763, MMACHC, methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria, [RH, Score=132, Expect=2e-36]} {Mouse: ENSMUSG00000028690, Mmachc, methylmalonic aciduria cblC type, with homocystinuria, [RH, Score=132, Expect=6e-37]} {Smed: dd_Smed_v6_8584_0_1, dd_Smed_v6_8584_0_1, [RH, Score=114, Expect=6e-30]} {RNA1509_29990, RNA1509_35509, RNA1509_39634} {RNA1310_36622, RNA1509_35509, RNA1509_39634} {RNA1509_35509, RNA1509_39634, RNA815_18456}
14. MligTC455_35307 38 0.79 Mlig455_012667

Neo: -

Age: Up-Down-Down

 SLC12A9 0.951 - - - 0.951 - - Mlig455_012667 {REF} {Length: 2914} {Pfam: Amino acid permease [PF00324.23, score=25.1]} {Human: ENSG00000146828, SLC12A9, solute carrier family 12 member 9, [Score=63.5, Expect=2e-12]} {Mouse: ENSMUSG00000037344, Slc12a9, solute carrier family 12 (potassium/chloride transporters), member 9, [Score=65.1, Expect=4e-13]} {Dmel: FBgn0032689, CG10413, [Score=87.0, Expect=7e-21]} {Celegans: WBGene00020207, T04B8.5, [Score=88.6, Expect=1e-21]} {Smed: dd_Smed_v6_1738_0_6, dd_Smed_v6_1738_0_6, [Score=101, Expect=3e-26]} {RNA1509_47734} {RNA1310_20621} {RNA815_24306}
15. MligTC455_13912 61 1.28 Mlig455_000796

Neo: -

Age: -

 UHRF1BP1L 0.95 - - - 0.950 - - Mlig455_000796 {REF} {Length: 4519} {Pfam: N-terminal region of Chorein or VPS13 [PF12624.9, score=56.1]} {Human: ENSG00000111647, UHRF1BP1L, UHRF1 binding protein 1 like, [RH, Score=361, Expect=7e-104]} {Mouse: ENSMUSG00000039512, Uhrf1bp1, UHRF1 (ICBP90) binding protein 1, [RH, Score=345, Expect=9e-99]} {Dmel: FBgn0083962, CG34126, [Score=267, Expect=8e-73]} {Celegans: WBGene00008094, C44H4.4, [Score=226, Expect=1e-60]} {Smed: dd_Smed_v6_11401_0_1, dd_Smed_v6_11401_0_1, [RH, Score=410, Expect=2e-123]} {RNA1509_15045, RNA1509_44056} {RNA1310_2283.1, RNA1509_15045, RNA1509_44056} {RNA1509_15045, RNA1509_44056, RNA815_2114.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA