Data search
Results for MligTC455_31540
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_31540 | 586 | 12.21 | Mlig455_009199 | Neo: Int S/G2/M Age: Up-Down-Down |
CPSF1 | Mlig455_009199 {REF} {Length: 7327} {TRANSSPLICED} {Pfam: CPSF A subunit region [PF03178.17, score=217.3]; Mono-functional DNA-alkylating methyl methanesulfonate N-term [PF10433.11, score=80.2]} {Human: ENSG00000071894, CPSF1, cleavage and polyadenylation specific factor 1, [RH, Score=567, Expect=4e-173]; ENSG00000285049, CPSF1, cleavage and polyadenylation specific factor 1, [RH, Score=567, Expect=4e-173]} {Mouse: ENSMUSG00000034022, Cpsf1, cleavage and polyadenylation specific factor 1, [RH, Score=570, Expect=3e-174]} {Dmel: FBgn0024698, Cpsf160, Cleavage and polyadenylation specificity factor 160, [RH, Score=473, Expect=8e-140]} {Celegans: WBGene00022301, cpsf-1, Probable cleavage and polyadenylation specificity factor subunit 1, [RH, Score=364, Expect=5e-103]} {Smed: dd_Smed_v6_8644_0_1, dd_Smed_v6_8644_0_1, [RH, Score=468, Expect=1e-137]} {RNA1509_23949, RNA1509_5909} {RNA1310_503.1, RNA1509_23949, RNA1509_5909} {RNA1509_23949, RNA1509_5909, RNA815_575.1} |
Cumulative graph for MligTC455_31540
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -0.469 | 4.018 | 0.67901 | 1.00000 | |
| RegionR2 | 0.625 | 4.018 | 0.30589 | 0.69650 | |
| RegionR3 | 0.135 | 4.018 | 0.77024 | 1.00000 | |
| RegionR4 | -0.438 | 4.018 | 0.43146 | 0.75990 | |
| RegionR5 | -0.033 | 4.018 | 0.93481 | 1.00000 | |
| RegionR6 | -0.677 | 4.018 | 0.18251 | 0.74732 | |
| RegionR7 | 0.999 | 4.018 | 0.07595 | 0.53178 | |
| RegionR8 | -0.14 | 4.018 | 0.86671 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | 1.189 | 4.018 | 0.46500 | 1.00000 | |
| RegenerationR2 | 0.599 | 4.018 | 0.26723 | 0.71296 | |
| RegenerationR3 | 1.263 | 4.018 | 0.03281 | 0.32380 | |
| RegenerationR4 | 0.565 | 4.018 | 0.33708 | 0.76990 | |
| RegenerationR5 | 0.822 | 4.018 | 0.12455 | 0.52749 | |
| RegenerationR6 | 2.07 | 4.018 | 0.00038 | 0.02010 | |
| RegenerationBL | 1.506 | 4.018 | 0.01894 | 0.14828 | |
| RegenerationTP | -0.149 | 4.018 | 0.84482 | 1.00000 |
Genes with expression patterns similar to MligTC455_31540
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_31540 | 586 | 12.21 | Mlig455_009199 | Neo: Int S/G2/M Age: Up-Down-Down |
CPSF1 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_009199 {REF} {Length: 7327} {TRANSSPLICED} {Pfam: CPSF A subunit region [PF03178.17, score=217.3]; Mono-functional DNA-alkylating methyl methanesulfonate N-term [PF10433.11, score=80.2]} {Human: ENSG00000071894, CPSF1, cleavage and polyadenylation specific factor 1, [RH, Score=567, Expect=4e-173]; ENSG00000285049, CPSF1, cleavage and polyadenylation specific factor 1, [RH, Score=567, Expect=4e-173]} {Mouse: ENSMUSG00000034022, Cpsf1, cleavage and polyadenylation specific factor 1, [RH, Score=570, Expect=3e-174]} {Dmel: FBgn0024698, Cpsf160, Cleavage and polyadenylation specificity factor 160, [RH, Score=473, Expect=8e-140]} {Celegans: WBGene00022301, cpsf-1, Probable cleavage and polyadenylation specificity factor subunit 1, [RH, Score=364, Expect=5e-103]} {Smed: dd_Smed_v6_8644_0_1, dd_Smed_v6_8644_0_1, [RH, Score=468, Expect=1e-137]} {RNA1509_23949, RNA1509_5909} {RNA1310_503.1, RNA1509_23949, RNA1509_5909} {RNA1509_23949, RNA1509_5909, RNA815_575.1} |
| 2. | MligTC455_41160 | 780 | 16.24 | Mlig455_014918 | Neo: - Age: Down-Down-Up |
RBBP6 | 2.542 | - | 0.829 | - | 0.954 | - | 0.759 | Mlig455_014918 {REF} {Length: 5116} {TRANSSPLICED} {Pfam: DWNN domain [PF08783.13, score=33.3]; U-box domain [PF04564.17, score=26.9]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=20.7]; Ring finger domain [PF13639.8, score=20.2]} {Human: ENSG00000122257, RBBP6, RB binding protein 6, ubiquitin ligase, [Score=80.1, Expect=2e-14]} {Mouse: ENSMUSG00000030779, Rbbp6, retinoblastoma binding protein 6, ubiquitin ligase, [Score=79.7, Expect=2e-14]} {Dmel: FBgn0086129, snama, something that sticks like glue, [Score=77.4, Expect=6e-14]} {Celegans: WBGene00009477, rbpl-1, Retinoblastoma Binding Protein Like, [Score=61.2, Expect=3e-09]} {Smed: dd_Smed_v6_3780_0_2, dd_Smed_v6_3780_0_2, [Score=53.1, Expect=8e-07]} {RNA1509_5537} {RNA1310_2775} {RNA815_5708} |
| 3. | MligTC455_43657 | 978 | 20.37 | Mlig455_045054, Mlig455_045067 | Neo: - Age: - Region-enriched R5: 1.200/0.01673 |
2.427 | - | 0.707 | - | 0.966 | - | 0.754 | Mlig455_045054 {REF} {Length: 2820} {TRANSSPLICED} {RNA1509_17635, RNA1509_35161} {RNA1310_7263.1, RNA1509_35161} {RNA1509_35161, RNA815_17774} Mlig455_045067 {REF} {Length: 2816} {TRANSSPLICED} {RNA1509_17635} {RNA1310_7263.1, RNA1509_17635} {RNA1509_17635, RNA815_17774} |
|
| 4. | MligTC455_48879 | 626 | 13.03 | Mlig455_063780 | Neo: Int S/G2/M Age: Up-Down-Up |
HACD3 | 1.852 | - | - | - | 0.972 | - | 0.880 | Mlig455_063780 {REF} {Length: 3161} {TRANSSPLICED} {Pfam: Protein tyrosine phosphatase-like protein, PTPLA [PF04387.16, score=157.0]; CS domain [PF04969.18, score=23.1]} {Human: ENSG00000074696, HACD3, 3-hydroxyacyl-CoA dehydratase 3, [RH, Score=197, Expect=6e-59]} {Mouse: ENSMUSG00000033629, Hacd3, 3-hydroxyacyl-CoA dehydratase 3, [RH, Score=198, Expect=2e-59]} {Dmel: FBgn0032524, CG9267, [RH, Score=226, Expect=4e-70]} {Celegans: WBGene00020517, hpo-8, Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase hpo-8, [Score=90.5, Expect=7e-21]} {Smed: dd_Smed_v6_3998_0_1, dd_Smed_v6_3998_0_1, [Score=281, Expect=3e-91]} {RNA1509_11453} {RNA1310_14107.2} {RNA815_19073.1} |
| 5. | MligTC455_43209 | 379 | 7.89 | Mlig455_016249 | Neo: - Age: Down-Up-Down |
TAF9 | 1.823 | - | 0.857 | - | 0.966 | - | - | Mlig455_016249 {REF} {Length: 2000} {TRANSSPLICED} {Pfam: Transcription initiation factor IID, 31kD subunit [PF02291.17, score=132.0]; CENP-S protein [PF15630.8, score=31.7]; Bromodomain associated [PF07524.15, score=23.9]; Centromere kinetochore component CENP-T histone fold [PF15511.8, score=23.6]} {Human: ENSG00000276463, TAF9, TATA-box binding protein associated factor 9, [RH, Score=135, Expect=6e-39]; ENSG00000273841, TAF9, TATA-box binding protein associated factor 9, [RH, Score=135, Expect=6e-39]; ENSG00000187325, TAF9B, TATA-box binding protein associated factor 9b, [RH, Score=134, Expect=2e-38]} {Mouse: ENSMUSG00000078941, Ak6, adenylate kinase 6, [RH, Score=135, Expect=4e-39]; ENSMUSG00000052293, Taf9, TATA-box binding protein associated factor 9, [RH, Score=135, Expect=4e-39]; ENSMUSG00000047242, Taf9b, TATA-box binding protein associated factor 9B, [RH, Score=132, Expect=4e-38]} {Dmel: FBgn0000617, e(y)1, enhancer of yellow 1, [RH, Score=128, Expect=4e-36]} {RNA1509_26456, RNA1509_41155} {RNA1310_14966.2, RNA1509_26456, RNA1509_41155} {RNA1509_26456, RNA1509_41155, RNA815_17644} |
| 6. | MligTC455_16242 | 233 | 4.85 | Mlig455_009696 | Neo: - Age: - |
1.785 | - | - | - | 0.958 | - | 0.827 | Mlig455_009696 {REF} {Length: 2743} {TRANSSPLICED} {RNA1509_56072} {RNA1310_35648.1} {RNA815_22277} | |
| 7. | MligTC455_35719 | 572 | 11.93 | Mlig455_046043 | Neo: - Age: logFC(26M/2M)=0.269 |
IPO7 | 1.766 | - | - | - | 0.797 | - | 0.969 | Mlig455_046043 {REF} {Length: 4353} {Human: ENSG00000205339, IPO7, importin 7, [Score=83.2, Expect=1e-17]} {Mouse: ENSMUSG00000066232, Ipo7, importin 7, [Score=83.2, Expect=1e-17]} {Dmel: FBgn0026252, msk, moleskin, [Score=68.6, Expect=7e-13]} {RNA1509_19137, RNA1509_45685} {RNA1310_32443, RNA1509_19137} {RNA1509_19137, RNA815_11916.2} |
| 8. | MligTC455_16084 | 669 | 13.94 | Mlig455_064829 | Neo: - Age: - Region-enriched R5: 1.583/0.01422 |
ERGIC3 | 1.698 | 0.747 | - | - | - | - | 0.951 | Mlig455_064829 {REF} {Length: 11460} {TRANSSPLICED} {Pfam: Endoplasmic reticulum vesicle transporter [PF07970.14, score=268.9]; Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) [PF13850.8, score=99.6]} {Human: ENSG00000125991, ERGIC3, ERGIC and golgi 3, [RH, Score=385, Expect=3e-132]} {Mouse: ENSMUSG00000005881, Ergic3, ERGIC and golgi 3, [RH, Score=383, Expect=2e-131]} {Dmel: FBgn0036489, CG7011, [RH, Score=301, Expect=5e-100]} {Celegans: WBGene00010725, erv-46, Yeast ERV (ER to Golgi transport Vesicle protein) homolog, [RH, Score=314, Expect=6e-105]} {Smed: dd_Smed_v6_8239_0_1, dd_Smed_v6_8239_0_1, [RH, Score=399, Expect=8e-138]} {RNA1509_12548, RNA1509_24446, RNA1509_27360, RNA1509_46735} {RNA1310_19725, RNA1509_12548, RNA1509_24446, RNA1509_27360, RNA1509_46735} {RNA1509_12548, RNA1509_24446, RNA1509_27360, RNA1509_46735, RNA815_9609} |
| 9. | MligTC455_44495 | 322 | 6.7 | Mlig455_039415 | Neo: - Age: - |
STAT4 | 1.691 | 0.740 | - | - | - | - | 0.951 | Mlig455_039415 {REF} {Length: 2741} {TRANSSPLICED} {Pfam: SH2 domain [PF00017.26, score=23.5]} {Human: ENSG00000138378, STAT4, signal transducer and activator of transcription 4, [RH, Score=70.5, Expect=6e-12]} {Mouse: ENSMUSG00000062939, Stat4, signal transducer and activator of transcription 4, [RH, Score=76.3, Expect=7e-14]} {RNA1509_16743, RNA1509_17436} {RNA1310_6522.1, RNA1509_16743, RNA1509_17436} {RNA1509_16743, RNA1509_17436, RNA815_3533} |
| 10. | MligTC455_17829 | 125 | 2.61 | Mlig455_048462 | Neo: - Age: Up-Up-Down |
KEAP1 | 1.68 | - | - | - | - | 0.730 | 0.950 | Mlig455_048462 {REF} {Length: 3268} {Pfam: Kelch motif [PF01344.27, score=223.7]; Kelch motif [PF13964.8, score=132.4]; Kelch motif [PF07646.17, score=82.2]; Galactose oxidase, central domain [PF13418.8, score=81.0]; Galactose oxidase, central domain [PF13415.8, score=71.3]; Kelch motif [PF13854.8, score=41.4]} {Human: ENSG00000079999, KEAP1, kelch like ECH associated protein 1, [Score=270, Expect=5e-85]} {Mouse: ENSMUSG00000003308, Keap1, kelch-like ECH-associated protein 1, [Score=264, Expect=5e-83]} {Dmel: FBgn0038475, Keap1, [Score=269, Expect=9e-84]} {Celegans: WBGene00002185, kel-3, KELch-repeat containing protein, [Score=131, Expect=1e-33]} {Smed: dd_Smed_v6_1751_0_1, dd_Smed_v6_1751_0_1, [Score=342, Expect=2e-113]} {RNA1509_23206} {RNA1310_45235} {RNA815_31075} |
| 11. | MligTC455_38960 | 1032 | 21.51 | Mlig455_042351 | Neo: - Age: Up-Down-Up |
PRPF40A | 0.982 | - | - | - | 0.982 | - | - | Mlig455_042351 {REF} {Length: 3946} {TRANSSPLICED} {Pfam: FF domain [PF01846.21, score=68.4]} {Human: ENSG00000196504, PRPF40A, pre-mRNA processing factor 40 homolog A, [Score=229, Expect=1e-65]; ENSG00000110844, PRPF40B, pre-mRNA processing factor 40 homolog B, [Score=222, Expect=3e-63]} {Mouse: ENSMUSG00000061136, Prpf40a, pre-mRNA processing factor 40A, [Score=229, Expect=6e-66]; ENSMUSG00000023007, Prpf40b, pre-mRNA processing factor 40B, [Score=222, Expect=2e-63]} {Dmel: FBgn0031492, CG3542, [Score=210, Expect=1e-59]} {Celegans: WBGene00014218, ZK1098.1, WW domain-containing protein ZK1098.1, [Score=169, Expect=2e-47]} {Smed: dd_Smed_v6_1909_1_1, dd_Smed_v6_1909_1_1, [Score=234, Expect=4e-69]} {RNA1509_33193, RNA1509_4399} {RNA1310_5111, RNA1509_33193} {RNA1509_33193, RNA815_7882} |
| 12. | MligTC455_26312 | 193 | 4.02 | Mlig455_030839 | Neo: Irradiation Age: - Region-enriched R5: 1.217/0.02541 |
TTC13 | 0.971 | - | - | - | - | - | 0.971 | Mlig455_030839 {REF} {Length: 7362} {Pfam: Tetratricopeptide repeat [PF13371.8, score=51.7]; Tetratricopeptide repeat [PF13428.8, score=48.7]; Tetratricopeptide repeat [PF07719.19, score=46.7]; TPR repeat [PF13414.8, score=37.6]; Tetratricopeptide repeat [PF14559.8, score=37.4]; Tetratricopeptide repeat [PF13181.8, score=36.9]; Tetratricopeptide repeat [PF00515.30, score=36.7]; Tetratricopeptide repeat [PF13432.8, score=36.5]; Tetratricopeptide repeat [PF13431.8, score=27.8]; Tetratricopeptide repeat [PF13176.8, score=26.0]; Tetratricopeptide repeat [PF13174.8, score=24.9]; MalT-like TPR region [PF17874.3, score=19.1]} {Human: ENSG00000143643, TTC13, tetratricopeptide repeat domain 13, [RH, Score=290, Expect=5e-84]} {Mouse: ENSMUSG00000037300, Ttc13, tetratricopeptide repeat domain 13, [RH, Score=296, Expect=1e-86]} {RNA1509_23308, RNA1509_49951, RNA1509_5145} {RNA1310_3288, RNA1509_23308, RNA1509_49951, RNA1509_5145} {RNA1509_23308, RNA1509_49951, RNA1509_5145, RNA815_7616.1} |
| 13. | MligTC455_36435 | 206 | 4.3 | Mlig455_063032 | Neo: - Age: - |
RTL1 | 0.958 | - | - | - | 0.958 | - | - | Mlig455_063032 {REF} {Length: 7806} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=45.6]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=24.6]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=65.9, Expect=1e-10]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=108, Expect=1e-24]} {RNA1509_11174} {RNA1310_21447} {RNA815_26029.1} |
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