TomoSeq data search

Data search

Results for MligTC455_31541

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_31541

217

4.53

Mlig455_009621

Neo: -

Age: Up-Down-Down

CPSF1

Mlig455_009621 {REF} {Length: 7493} {TRANSSPLICED} {Pfam: CPSF A subunit region [PF03178.17, score=217.3]; Mono-functional DNA-alkylating methyl methanesulfonate N-term [PF10433.11, score=80.2]} {Human: ENSG00000071894, CPSF1, cleavage and polyadenylation specific factor 1, [RH, Score=567, Expect=4e-173]; ENSG00000285049, CPSF1, cleavage and polyadenylation specific factor 1, [RH, Score=567, Expect=4e-173]} {Mouse: ENSMUSG00000034022, Cpsf1, cleavage and polyadenylation specific factor 1, [RH, Score=570, Expect=3e-174]} {Dmel: FBgn0024698, Cpsf160, Cleavage and polyadenylation specificity factor 160, [RH, Score=473, Expect=8e-140]} {Celegans: WBGene00022301, cpsf-1, Probable cleavage and polyadenylation specificity factor subunit 1, [RH, Score=364, Expect=5e-103]} {Smed: dd_Smed_v6_8644_0_1, dd_Smed_v6_8644_0_1, [RH, Score=468, Expect=1e-137]} {RNA1509_5909} {RNA1310_503.1} {RNA815_575.1}

Cumulative graph for MligTC455_31541

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-3.419	2.712	0.99973	1.00000
RegionR2	0.114	2.712	0.78512	1.00000
RegionR3	-0.375	2.712	0.87900	1.00000
RegionR4	2.115	2.712	0.14496	0.39091
RegionR5	0.722	2.712	0.52563	0.88800
RegionR6	0.757	2.712	0.51694	1.00000
RegionR7	1.975	2.712	0.18270	0.78180
RegionR8	-1.889	2.712	1.00000	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-1.378	2.712	1.00000	1.00000
RegenerationR2	0.292	2.712	0.74918	0.97300
RegenerationR3	1.53	2.712	0.20767	0.64270
RegenerationR4	0.997	2.712	0.35680	0.78610
RegenerationR5	2.114	2.712	0.05285	0.36974
RegenerationR6	1.496	2.712	0.21475	0.55874
RegenerationBL	2.805	2.712	0.07569	0.32145
RegenerationTP	1.725	2.712	0.44506	0.86436

Genes with expression patterns similar to MligTC455_31541

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_31541	217	4.53	Mlig455_009621	Neo: - Age: Up-Down-Down	CPSF1	4	-	-	1.000	1.000	1.000	1.000	Mlig455_009621 {REF} {Length: 7493} {TRANSSPLICED} {Pfam: CPSF A subunit region [PF03178.17, score=217.3]; Mono-functional DNA-alkylating methyl methanesulfonate N-term [PF10433.11, score=80.2]} {Human: ENSG00000071894, CPSF1, cleavage and polyadenylation specific factor 1, [RH, Score=567, Expect=4e-173]; ENSG00000285049, CPSF1, cleavage and polyadenylation specific factor 1, [RH, Score=567, Expect=4e-173]} {Mouse: ENSMUSG00000034022, Cpsf1, cleavage and polyadenylation specific factor 1, [RH, Score=570, Expect=3e-174]} {Dmel: FBgn0024698, Cpsf160, Cleavage and polyadenylation specificity factor 160, [RH, Score=473, Expect=8e-140]} {Celegans: WBGene00022301, cpsf-1, Probable cleavage and polyadenylation specificity factor subunit 1, [RH, Score=364, Expect=5e-103]} {Smed: dd_Smed_v6_8644_0_1, dd_Smed_v6_8644_0_1, [RH, Score=468, Expect=1e-137]} {RNA1509_5909} {RNA1310_503.1} {RNA815_575.1}
2.	MligTC455_16547	428	8.92	Mlig455_002781	Neo: - Age: Up-Down-Down	ZSWIM8	0.964	-	-	-	-	-	0.964	Mlig455_002781 {REF} {Length: 8373} {Pfam: SWIM zinc finger [PF04434.19, score=24.6]} {Human: ENSG00000214655, ZSWIM8, zinc finger SWIM-type containing 8, [Score=376, Expect=1e-105]} {Mouse: ENSMUSG00000021819, Zswim8, zinc finger SWIM-type containing 8, [Score=375, Expect=1e-105]} {Dmel: FBgn0085430, CG34401, [Score=377, Expect=4e-106]} {Celegans: WBGene00004140, ebax-1, Elongin-B/C E3 ligase in AXon guidance, [Score=235, Expect=6e-62]} {Smed: dd_Smed_v6_5222_0_1, dd_Smed_v6_5222_0_1, [Score=321, Expect=2e-88]} {RNA1509_4235} {RNA1310_396.1} {RNA815_11285}
3.	MligTC455_33868	554	11.55	Mlig455_005238	Neo: - Age: -	MED13	0.964	-	-	-	-	-	0.964	Mlig455_005238 {REF} {Length: 7105} {Pfam: Mediator complex subunit 13 C-terminal domain [PF06333.14, score=204.1]; Mediator complex subunit 13 N-terminal [PF11597.10, score=49.4]} {Human: ENSG00000108510, MED13, mediator complex subunit 13, [RH, Score=213, Expect=1e-54]; ENSG00000123066, MED13L, mediator complex subunit 13 like, [RH, Score=203, Expect=9e-52]} {Mouse: ENSMUSG00000034297, Med13, mediator complex subunit 13, [RH, Score=213, Expect=6e-55]} {Dmel: FBgn0003415, skd, skuld, [RH, Score=199, Expect=1e-50]} {Celegans: WBGene00002295, let-19, Mediator of RNA polymerase II transcription subunit 13, [RH, Score=145, Expect=2e-34]} {Smed: dd_Smed_v6_5628_0_1, dd_Smed_v6_5628_0_1, [RH, Score=176, Expect=4e-44]} {RNA1509_5621} {RNA1310_887, RNA1509_5621} {RNA1509_5621, RNA815_2444}
4.	MligTC455_16548	434	9.05	Mlig455_066936	Neo: - Age: Up-Down-Down	ZSWIM8	0.959	-	-	-	-	-	0.959	Mlig455_066936 {REF} {Length: 10171} {Pfam: SWIM zinc finger [PF04434.19, score=24.1]} {Human: ENSG00000214655, ZSWIM8, zinc finger SWIM-type containing 8, [RH, Score=410, Expect=2e-122]} {Mouse: ENSMUSG00000021819, Zswim8, zinc finger SWIM-type containing 8, [RH, Score=411, Expect=6e-123]} {Dmel: FBgn0085430, CG34401, [RH, Score=396, Expect=3e-117]} {Celegans: WBGene00004140, ebax-1, Elongin-B/C E3 ligase in AXon guidance, [RH, Score=249, Expect=3e-68]} {Smed: dd_Smed_v6_5222_0_1, dd_Smed_v6_5222_0_1, [RH, Score=343, Expect=1e-99]} {RNA1509_4235} {RNA1310_396.1} {RNA815_11285}
5.	MligTC455_48633	399	8.32	Mlig455_054497	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.353		0.959	-	-	0.959	-	-	-	Mlig455_054497 {REF} {Length: 2714} {Pfam: TIR domain [PF13676.8, score=87.9]; SAM domain (Sterile alpha motif) [PF07647.19, score=27.1]; SAM domain (Sterile alpha motif) [PF00536.32, score=19.5]} {Smed: dd_Smed_v6_12177_0_1, dd_Smed_v6_12177_0_1, [Score=65.9, Expect=7e-11]} {RNA1509_36274} {RNA1310_5526} {RNA815_2549.1}
6.	MligTC455_42497	427	8.9	Mlig455_025883, Mlig455_062264	Neo: - Age: - Region-enriched R5: 1.978/0.02600	SOCS6	0.957	-	-	-	-	-	0.957	Mlig455_025883 {REF} {Length: 2688} {TRANSSPLICED} {Pfam: SOCS box [PF07525.18, score=33.0]; SH2 domain [PF00017.26, score=26.0]} {Human: ENSG00000170677, SOCS6, suppressor of cytokine signaling 6, [Score=77.4, Expect=4e-15]} {Mouse: ENSMUSG00000056153, Socs6, suppressor of cytokine signaling 6, [Score=76.6, Expect=4e-15]} {Dmel: FBgn0030869, Socs16D, Suppressor of Cytokine Signaling at 16D, [Score=77.0, Expect=3e-15]} {Celegans: WBGene00009556, F39B2.5, [Score=45.4, Expect=1e-05]} {Smed: dd_Smed_v6_13802_0_1, dd_Smed_v6_13802_0_1, [Score=94.4, Expect=1e-21]} {RNA1509_29098} {RNA1310_16429.1} {RNA815_12857} Mlig455_062264 {REF} {Length: 1811} {TRANSSPLICED} {Pfam: SOCS box [PF07525.18, score=33.1]; SH2 domain [PF00017.26, score=28.0]} {Human: ENSG00000170677, SOCS6, suppressor of cytokine signaling 6, [Score=80.9, Expect=3e-16]} {Mouse: ENSMUSG00000056153, Socs6, suppressor of cytokine signaling 6, [Score=80.5, Expect=2e-16]} {Dmel: FBgn0030869, Socs16D, Suppressor of Cytokine Signaling at 16D, [Score=79.0, Expect=7e-16]} {Celegans: WBGene00009556, F39B2.5, [Score=47.0, Expect=4e-06]} {Smed: dd_Smed_v6_13802_0_1, dd_Smed_v6_13802_0_1, [Score=95.1, Expect=5e-22]} {RNA1509_29098} {RNA1310_16429.1, RNA1509_29098} {RNA1509_29098, RNA815_12857}
7.	MligTC455_17276	191	3.98	Mlig455_014333	Neo: - Age: - Region-enriched R5: 2.646/0.02196	PTPRS	0.954	-	-	-	-	-	0.954	Mlig455_014333 {REF} {Length: 2903} {Pfam: Protein-tyrosine phosphatase [PF00102.29, score=351.6]} {Human: ENSG00000105426, PTPRS, protein tyrosine phosphatase, receptor type S, [Score=291, Expect=2e-83]; ENSG00000173482, PTPRM, protein tyrosine phosphatase, receptor type M, [Score=280, Expect=9e-80]; ENSG00000142949, PTPRF, protein tyrosine phosphatase, receptor type F, [Score=278, Expect=1e-78]; ENSG00000273993, PTPRK, protein tyrosine phosphatase, receptor type K, [Score=277, Expect=9e-79]; ENSG00000152894, PTPRK, protein tyrosine phosphatase, receptor type K, [Score=277, Expect=9e-79]} {Mouse: ENSMUSG00000013236, Ptprs, protein tyrosine phosphatase, receptor type, S, [Score=285, Expect=2e-81]; ENSMUSG00000028399, Ptprd, protein tyrosine phosphatase, receptor type, D, [Score=281, Expect=5e-80]; ENSMUSG00000033278, Ptprm, protein tyrosine phosphatase, receptor type, M, [Score=281, Expect=4e-80]; ENSMUSG00000033295, Ptprf, protein tyrosine phosphatase, receptor type, F, [Score=277, Expect=7e-79]; ENSMUSG00000053141, Ptprt, protein tyrosine phosphatase, receptor type, T, [Score=272, Expect=3e-77]; ENSMUSG00000019889, Ptprk, protein tyrosine phosphatase, receptor type, K, [Score=271, Expect=7e-77]} {Dmel: FBgn0267486, Ptp36E, Protein tyrosine phosphatase 36E, [Score=329, Expect=4e-102]} {Celegans: WBGene00011755, T13H5.1, Protein-tyrosine-phosphatase, [RH, Score=299, Expect=9e-91]} {Smed: dd_Smed_v6_13723_0_1, dd_Smed_v6_13723_0_1, [RH, Score=276, Expect=6e-82]} {RNA1509_14248} {RNA1310_6957.1} {RNA815_16025}
8.	MligTC455_22622	253	5.27	Mlig455_069069	Neo: - Age: - Regeneration-upregulated R6: 2.381 Regeneration-enriched R6: 2.381	ATRX	0.952	-	-	-	-	-	0.952	Mlig455_069069 {REF} {Length: 7313} {TRANSSPLICED} {Pfam: SNF2-related domain [PF00176.25, score=198.0]; Helicase conserved C-terminal domain [PF00271.33, score=51.8]} {Human: ENSG00000085224, ATRX, ATRX, chromatin remodeler, [Score=757, Expect=0.0]} {Mouse: ENSMUSG00000031229, Atrx, ATRX, chromatin remodeler, [RH, Score=759, Expect=0.0]} {Dmel: FBgn0039338, XNP, [RH, Score=709, Expect=0.0]} {Celegans: WBGene00006961, xnp-1, Transcriptional regulator ATRX homolog, [Score=626, Expect=0.0]} {Smed: dd_Smed_v6_5478_0_1, dd_Smed_v6_5478_0_1, [RH, Score=456, Expect=2e-139]} {RNA1509_2800} {RNA1310_990, RNA1509_2800} {RNA1509_2800, RNA815_839}

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