M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_32234

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_32234 17 0.36 Mlig455_005702

Neo: -

Age: -

 Mlig455_005702 {REF} {Length: 810} {NoTransDecoderORF} {RNA1509_34199} {RNA1310_27268} {RNA815_5538}

Cumulative graph for MligTC455_32234

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.289 0.751 0.99986 1.00000
RegionR2 0.304 0.751 0.99988 1.00000
RegionR3 0.078 0.751 0.99997 1.00000
RegionR4 -0.064 0.751 0.99989 1.00000
RegionR5 0.049 0.751 1.00000 1.00000
RegionR6 0.171 0.751 1.00000 1.00000
RegionR7 -0.045 0.751 0.99994 1.00000
RegionR8 -0.204 0.751 0.99991 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.386 0.751 0.99988 1.00000
RegenerationR2 5.172 0.751 0.04953 0.36714
RegenerationR3 2.419 0.751 0.29215 0.72417
RegenerationR4 3.262 0.751 0.23621 0.68542
RegenerationR5 2.954 0.751 0.16975 0.59725
RegenerationR6 3.494 0.751 0.21889 0.56280
RegenerationBL 0.402 0.751 0.99988 1.00000
RegenerationTP 0.386 0.751 0.99986 1.00000


Genes with expression patterns similar to MligTC455_32234

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_32234 17 0.36 Mlig455_005702

Neo: -

Age: -

 2 - - - 1.000 - 1.000 Mlig455_005702 {REF} {Length: 810} {NoTransDecoderORF} {RNA1509_34199} {RNA1310_27268} {RNA815_5538}
2. MligTC455_40063 1170 24.37 Mlig455_005633, Mlig455_005677, Mlig455_008693

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.272

Region-specific R2: 8.260

Region-enriched R2: 8.105/0.00000

 MAGEL2, TRO 1.693 - - - 0.743 - 0.950

Mlig455_005633 {REF} {Length: 2008} {Pfam: PMG protein [PF05287.14, score=47.1]} {Human: ENSG00000067445, TRO, trophinin, [Score=65.1, Expect=1e-10]} {RNA1509_11063} {RNA1310_60276} {RNA815_42200}

Mlig455_005677 {REF} {Length: 1823} {Human: ENSG00000254585, MAGEL2, MAGE family member L2, [RH, Score=67.8, Expect=1e-12]} {RNA1509_11063} {RNA1310_60276} {RNA815_42200}

Mlig455_008693 {REF} {Length: 1327} {Pfam: PMG protein [PF05287.14, score=30.5]} {RNA1509_11063} {RNA1310_60276} {RNA815_42200}
3. MligTC455_46649 100 2.09 Mlig455_023901

Neo: -

Age: Up-Down-Up

Region-enriched R2: 5.216/0.00086

 SLC46A2 1.678 - - - 0.724 - 0.954 Mlig455_023901 {REF} {Length: 2695} {Pfam: Major Facilitator Superfamily [PF07690.18, score=79.0]} {Human: ENSG00000119457, SLC46A2, solute carrier family 46 member 2, [Score=71.6, Expect=1e-12]} {Mouse: ENSMUSG00000029650, Slc46a3, solute carrier family 46, member 3, [Score=77.4, Expect=1e-14]} {Dmel: FBgn0030576, CG15890, [RH, Score=100, Expect=5e-22]} {Celegans: WBGene00016705, C46C11.2, [RH, Score=95.9, Expect=6e-21]} {Smed: dd_Smed_v6_10822_0_1, dd_Smed_v6_10822_0_1, [Score=344, Expect=1e-113]} {RNA1509_40290} {RNA1310_13436} {RNA815_19265}
4. MligTC455_52280 259 5.39 Mlig455_040265, Mlig455_040274

Neo: -

Age: logFC(26M/2M)=-1.013

 0.978 - - - - - 0.978

Mlig455_040265 {REF} {Length: 617} {RNA1509_1537} {RNA1310_19960} {RNA815_6565}

Mlig455_040274 {REF} {Length: 706} {RNA1509_1537} {RNA1310_85398} {RNA815_32362}
5. MligTC455_46429 48 1 Mlig455_042128

Neo: -

Age: -

 0.97 - - - - - 0.970 Mlig455_042128 {REF} {Length: 1428} {Pfam: F5/8 type C domain [PF00754.27, score=33.1]} {RNA1310_65361} {RNA815_33677}
6. MligTC455_44316 38 0.8 Mlig455_014665

Neo: -

Age: -

 CALM2 0.967 - - - - - 0.967 Mlig455_014665 {REF} {Length: 2169} {Pfam: EF hand [PF00036.34, score=106.1]; EF-hand domain pair [PF13499.8, score=99.6]; EF hand [PF13202.8, score=88.6]; EF-hand domain [PF13405.8, score=80.4]; EF-hand domain pair [PF13833.8, score=74.3]; EF-hand domain [PF14658.8, score=34.2]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=27.3]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=24.7]; Dockerin type I domain [PF00404.20, score=20.7]; Glycosyl transferase family, helical bundle domain [PF02885.19, score=18.5]} {Human: ENSG00000143933, CALM2, calmodulin 2, [Score=90.1, Expect=1e-22]; ENSG00000198668, CALM1, calmodulin 1, [Score=89.4, Expect=7e-23]; ENSG00000160014, CALM3, calmodulin 3, [Score=89.4, Expect=7e-23]; ENSG00000178363, CALML3, calmodulin like 3, [Score=89.0, Expect=1e-22]} {Mouse: ENSMUSG00000063130, Calml3, calmodulin-like 3, [Score=94.7, Expect=5e-25]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=90.5, Expect=1e-23]} {Celegans: WBGene00000552, cmd-1, Calmodulin, [Score=89.7, Expect=2e-23]} {Smed: dd_Smed_v6_255_0_1, dd_Smed_v6_255_0_1, [Score=89.7, Expect=2e-23]} {RNA1310_43007} {RNA815_46660}
7. MligTC455_28218 313 6.52 Mlig455_028294, Mlig455_042261, Mlig455_047780, Mlig455_061505

Neo: -

Age: -

 0.965 - - - - - 0.965

Mlig455_028294 {REF} {Length: 1468} {NoTransDecoderORF} {RNA1509_26270} {RNA1310_4439.1} {RNA815_1450.1}

Mlig455_042261 {REF} {Length: 582} {NoTransDecoderORF} {RNA1509_44500} {RNA1310_4439.1} {RNA815_1450.1}

Mlig455_047780 {REF} {Length: 499} {NoTransDecoderORF} {RNA1509_44500} {RNA1310_4439.1} {RNA815_1450.1}

Mlig455_061505 {REF} {Length: 6981} {NoTransDecoderORF} {RNA1509_30620} {RNA1310_13656} {RNA815_1450.1}
8. MligTC455_28210 76 1.58 Mlig455_055621

Neo: -

Age: Up-Down-Down

 GABBR2 0.964 - - - - - 0.964 Mlig455_055621 {REF} {Length: 3422} {Pfam: 7 transmembrane sweet-taste receptor of 3 GCPR [PF00003.24, score=181.3]} {Human: ENSG00000136928, GABBR2, gamma-aminobutyric acid type B receptor subunit 2, [Score=278, Expect=7e-83]} {Mouse: ENSMUSG00000039809, Gabbr2, gamma-aminobutyric acid (GABA) B receptor, 2, [Score=278, Expect=8e-83]} {Dmel: FBgn0027575, GABA-B-R2, metabotropic GABA-B receptor subtype 2, [Score=320, Expect=5e-97]} {Celegans: WBGene00022675, gbb-2, GABA B receptor subunit; GABAB2 receptor subunit, [Score=241, Expect=5e-70]} {Smed: dd_Smed_v6_59890_0_1, dd_Smed_v6_59890_0_1, [Score=177, Expect=7e-53]} {RNA1509_30620} {RNA1310_13656} {RNA815_1450.1}
9. MligTC455_29679 78 1.63 Mlig455_069640

Neo: -

Age: logFC(26M/2M)=-0.480

 0.963 - - - - - 0.963 Mlig455_069640 {REF} {Length: 2739} {Pfam: Mab-21 protein [PF03281.16, score=23.9]} {RNA1509_26281} {RNA1310_4721} {RNA815_5358.1}
10. MligTC455_18011 38 0.8 Mlig455_066318

Neo: -

Age: -

 SLC35F4 0.961 - - - - - 0.961 Mlig455_066318 {REF} {Length: 2334} {Human: ENSG00000151812, SLC35F4, solute carrier family 35 member F4, [RH, Score=80.1, Expect=2e-15]} {Mouse: ENSMUSG00000021852, Slc35f4, solute carrier family 35, member F4, [RH, Score=80.9, Expect=8e-16]} {Dmel: FBgn0259222, CG42322, [Score=117, Expect=2e-27]} {Smed: dd_Smed_v6_18554_0_1, dd_Smed_v6_18554_0_1, [RH, Score=94.4, Expect=8e-22]} {RNA1310_93042} {RNA815_44166}
11. MligTC455_39903 11 0.24 Mlig455_000444, Mlig455_000505

Neo: -

Age: -

 0.961 - - - 0.961 - -

Mlig455_000444 {REF} {Length: 578} {NoTransDecoderORF}

Mlig455_000505 {REF} {Length: 587} {NoTransDecoderORF}
12. MligTC455_34277 14 0.29 Mlig455_031537

Neo: -

Age: Down-Up-Down

 ZBTB16 0.955 - - - - - 0.955 Mlig455_031537 {REF} {Length: 3719} {Pfam: C2H2-type zinc-finger domain [PF13909.8, score=59.8]; Unstructured region C-term to UIM in Ataxin3 [PF16619.7, score=20.3]; C2H2-type zinc finger [PF13894.8, score=19.4]} {Human: ENSG00000109906, ZBTB16, zinc finger and BTB domain containing 16, [Score=52.8, Expect=2e-06]; ENSG00000084093, REST, RE1 silencing transcription factor, [Score=52.0, Expect=5e-06]} {Mouse: ENSMUSG00000026135, Zfp142, zinc finger protein 142, [Score=62.4, Expect=3e-09]} {Dmel: FBgn0262160, CG9932, [RH, Score=66.6, Expect=9e-11]} {Celegans: WBGene00001824, hbl-1, Hunchback-like protein, [Score=50.1, Expect=6e-06]} {Smed: dd_Smed_v6_36433_0_1, dd_Smed_v6_36433_0_1, [RH, Score=177, Expect=2e-48]} {RNA1509_19024} {RNA1310_45424} {RNA815_39699}
13. MligTC455_13068 13 0.27 Mlig455_021784

Neo: -

Age: -

 0.954 - - - - - 0.954 Mlig455_021784 {REF} {Length: 905} {NoTransDecoderORF} {RNA1310_100071}
14. MligTC455_16607 52 1.08 Mlig455_010045

Neo: -

Age: Down-Up-Up

 0.954 - - - - - 0.954 Mlig455_010045 {REF} {Length: 2283} {Smed: dd_Smed_v6_14508_0_1, dd_Smed_v6_14508_0_1, [Score=71.6, Expect=9e-15]} {RNA1310_14473.1} {RNA815_57194}
15. MligTC455_34546 34 0.72 Mlig455_033259

Neo: -

Age: logFC(26M/2M)=-0.642

 TNKS 0.954 - - - 0.954 - - Mlig455_033259 {REF} {Length: 4261} {Pfam: Poly(ADP-ribose) polymerase catalytic domain [PF00644.22, score=75.2]; Spectrin repeat [PF00435.23, score=33.4]} {Human: ENSG00000173273, TNKS, tankyrase, [Score=62.4, Expect=2e-09]; ENSG00000285372, AC270292.3, tankyrase, [Score=62.4, Expect=2e-09]; ENSG00000107854, TNKS2, tankyrase 2, [Score=62.0, Expect=3e-09]; ENSG00000102699, PARP4, poly(ADP-ribose) polymerase family member 4, [Score=59.7, Expect=2e-08]} {Mouse: ENSMUSG00000031529, Tnks, tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase, [Score=62.4, Expect=2e-09]; ENSMUSG00000024811, Tnks2, tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2, [Score=62.0, Expect=2e-09]} {Dmel: FBgn0027508, Tnks, tankyrase, [Score=65.9, Expect=1e-10]} {Smed: dd_Smed_v6_8547_0_1, dd_Smed_v6_8547_0_1, [Score=59.7, Expect=5e-09]} {RNA1509_42623} {RNA1310_17668.1} {RNA815_15244}
16. MligTC455_15781 95 1.98 Mlig455_010961

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.411

Region-enriched R3: 4.373/0.00422

 0.953 - - - - - 0.953 Mlig455_010961 {REF} {Length: 2852} {TRANSSPLICED} {Pfam: X-Pro dipeptidyl-peptidase (S15 family) [PF02129.20, score=160.9]; Serine aminopeptidase, S33 [PF12146.10, score=27.9]; X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain [PF08530.12, score=23.6]; alpha/beta hydrolase fold [PF00561.22, score=22.2]} {RNA1509_39835} {RNA1310_1122.1, RNA1509_39835} {RNA1509_39835, RNA815_24300}
17. MligTC455_24523 144 2.99 Mlig455_010636, Mlig455_010724

Neo: -

Age: -

Region-enriched R2: 9.355/0.00000

 RGS6 0.953 - - - - - 0.953

Mlig455_010636 {REF} {Length: 2512} {Pfam: Regulator of G-protein signalling DHEX domain [PF18148.3, score=118.4]; Regulator of G protein signaling domain [PF00615.21, score=116.4]; Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) [PF00610.23, score=31.3]} {Human: ENSG00000182732, RGS6, regulator of G protein signaling 6, [Score=301, Expect=3e-95]} {Mouse: ENSMUSG00000021219, Rgs6, regulator of G-protein signaling 6, [Score=299, Expect=2e-94]; ENSMUSG00000026527, Rgs7, regulator of G protein signaling 7, [Score=290, Expect=6e-91]} {Dmel: FBgn0259927, CG42450, [RH, Score=327, Expect=2e-98]} {Celegans: WBGene00001145, eat-16, [Score=217, Expect=1e-63]} {Smed: dd_Smed_v6_5311_0_1, dd_Smed_v6_5311_0_1, [RH, Score=384, Expect=1e-127]} {RNA1509_59108} {RNA1310_13711, RNA1509_59108} {RNA1509_59108, RNA815_9935}

Mlig455_010724 {REF} {Length: 2512} {Pfam: Regulator of G-protein signalling DHEX domain [PF18148.3, score=118.4]; Regulator of G protein signaling domain [PF00615.21, score=113.1]; Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) [PF00610.23, score=31.3]} {Human: ENSG00000182732, RGS6, regulator of G protein signaling 6, [Score=299, Expect=2e-94]} {Mouse: ENSMUSG00000021219, Rgs6, regulator of G-protein signaling 6, [Score=297, Expect=2e-93]; ENSMUSG00000026527, Rgs7, regulator of G protein signaling 7, [Score=287, Expect=4e-90]} {Dmel: FBgn0259927, CG42450, [RH, Score=324, Expect=1e-97]} {Celegans: WBGene00001145, eat-16, [Score=214, Expect=8e-63]} {Smed: dd_Smed_v6_5311_0_1, dd_Smed_v6_5311_0_1, [RH, Score=382, Expect=8e-127]} {RNA1509_59108} {RNA1310_13711} {RNA815_9935}
18. MligTC455_49211 30 0.63 Mlig455_044533

Neo: -

Age: -

 0.953 - - - - - 0.953 Mlig455_044533 {REF} {Length: 2489} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=139.7]} {Celegans: WBGene00012116, del-4, DEgenerin Like, [Score=62.0, Expect=5e-10]} {Smed: dd_Smed_v6_26469_0_1, dd_Smed_v6_26469_0_1, [Score=51.6, Expect=1e-07]} {RNA1509_50956} {RNA1310_27155} {RNA815_39321}
19. MligTC455_07439 17 0.36 Mlig455_056539

Neo: -

Age: -

 THAP12 0.951 - - - - - 0.951 Mlig455_056539 {REF} {Length: 2824} {Pfam: Domain of unknown function (DUF4371) [PF14291.8, score=97.0]; Protein of unknown function (DUF 659) [PF04937.17, score=19.0]} {Human: ENSG00000137492, THAP12, THAP domain containing 12, [Score=135, Expect=3e-33]} {Mouse: ENSMUSG00000030753, Thap12, THAP domain containing 12, [Score=126, Expect=3e-30]} {Smed: dd_Smed_v6_27814_0_2, dd_Smed_v6_27814_0_2, [Score=113, Expect=2e-28]} {RNA1310_98157} {RNA815_50753}
20. MligTC455_19679 66 1.38 Mlig455_028164

Neo: -

Age: -

Region-enriched R2: 5.194/0.00256

 SLC7A11 0.951 - - - - - 0.951 Mlig455_028164 {REF} {Length: 3562} {TRANSSPLICED} {Pfam: Amino acid permease [PF13520.8, score=187.6]; Amino acid permease [PF00324.23, score=95.8]} {Human: ENSG00000151012, SLC7A11, solute carrier family 7 member 11, [RH, Score=350, Expect=1e-115]} {Mouse: ENSMUSG00000027737, Slc7a11, solute carrier family 7 (cationic amino acid transporter, y+ system), member 11, [Score=370, Expect=2e-123]} {Dmel: FBgn0002778, mnd, minidiscs, [RH, Score=379, Expect=5e-127]} {Celegans: WBGene00000004, aat-3, Amino Acid Transporter, [Score=331, Expect=2e-108]} {Smed: dd_Smed_v6_4211_0_1, dd_Smed_v6_4211_0_1, [Score=465, Expect=3e-160]} {RNA1310_31710.1} {RNA815_14153}
21. MligTC455_29933 52 1.07 Mlig455_013906, Mlig455_014143, Mlig455_018478, Mlig455_045918, Mlig455_063589, Mlig455_065792, Mlig455_065808

Neo: -

Age: -

 0.951 - - - - - 0.951

Mlig455_013906 {REF} {Length: 212} {Pfam: Pao retrotransposon peptidase [PF05380.15, score=167.8]; Protein of unknown function (DUF1759) [PF03564.17, score=125.1]; Putative peptidase (DUF1758) [PF05585.14, score=64.6]; Family of unknown function (DUF5641) [PF18701.3, score=56.1]; Integrase zinc binding domain [PF17921.3, score=32.2]; Integrase core domain [PF00665.28, score=30.1]; Aspartyl protease [PF13650.8, score=24.4]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=22.9]} {Celegans: WBGene00044435, Y20F4.8, [Score=49.7, Expect=1e-05]} {Smed: dd_Smed_v6_42915_0_1, dd_Smed_v6_42915_0_1, [Score=71.6, Expect=2e-14]} {RNA1509_44157} {RNA1310_373} {RNA815_29976}

Mlig455_014143 {REF} {Length: 4270} {TRANSSPLICED} {Pfam: Pao retrotransposon peptidase [PF05380.15, score=167.9]; Protein of unknown function (DUF1759) [PF03564.17, score=124.9]; Family of unknown function (DUF5641) [PF18701.3, score=35.5]} {RNA1509_44157} {RNA1310_373} {RNA815_20029}

Mlig455_018478 {REF} {Length: 6761} {Pfam: Pao retrotransposon peptidase [PF05380.15, score=167.6]; Protein of unknown function (DUF1759) [PF03564.17, score=124.9]; Putative peptidase (DUF1758) [PF05585.14, score=64.4]; Family of unknown function (DUF5641) [PF18701.3, score=55.8]; Integrase core domain [PF00665.28, score=30.1]; Aspartyl protease [PF13650.8, score=24.2]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=22.7]} {Celegans: WBGene00044435, Y20F4.8, [Score=50.1, Expect=1e-05]} {Smed: dd_Smed_v6_42915_0_1, dd_Smed_v6_42915_0_1, [Score=72.0, Expect=2e-14]} {RNA1509_44157} {RNA1310_373} {RNA815_20029}

Mlig455_045918 {REF} {Length: 6608} {Pfam: Pao retrotransposon peptidase [PF05380.15, score=157.8]; Putative peptidase (DUF1758) [PF05585.14, score=65.5]; Integrase zinc binding domain [PF17921.3, score=30.6]; Aspartyl protease [PF13650.8, score=24.9]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=24.8]; Integrase core domain [PF00665.28, score=24.3]} {Smed: dd_Smed_v6_34182_0_1, dd_Smed_v6_34182_0_1, [Score=52.4, Expect=5e-08]} {RNA1509_44157} {RNA1310_166} {RNA815_20029}

Mlig455_063589 {REF} {Length: 5337} {TRANSSPLICED} {Pfam: Pao retrotransposon peptidase [PF05380.15, score=168.4]; Protein of unknown function (DUF1759) [PF03564.17, score=125.5]; Putative peptidase (DUF1758) [PF05585.14, score=65.1]; Aspartyl protease [PF13650.8, score=24.9]} {RNA1509_44157} {RNA1310_373} {RNA815_20029}

Mlig455_065792 {REF} {Length: 4347} {Pfam: Pao retrotransposon peptidase [PF05380.15, score=60.7]} {RNA1509_44157} {RNA1310_373} {RNA815_29976}

Mlig455_065808 {REF} {Length: 5075} {Pfam: Pao retrotransposon peptidase [PF05380.15, score=157.9]; Protein of unknown function (DUF1759) [PF03564.17, score=124.8]; Putative peptidase (DUF1758) [PF05585.14, score=60.7]; Integrase core domain [PF00665.28, score=30.7]; Aspartyl protease [PF13650.8, score=24.6]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=23.1]; Family of unknown function (DUF5641) [PF18701.3, score=21.9]} {Smed: dd_Smed_v6_42915_0_1, dd_Smed_v6_42915_0_1, [Score=68.2, Expect=3e-13]} {RNA1509_44157} {RNA1310_373} {RNA815_25647}
22. MligTC455_37848 42 0.87 Mlig455_049400

Neo: -

Age: -

 0.95 - - - - - 0.950 Mlig455_049400 {REF} {Length: 2374} {RNA1509_58287} {RNA1310_1148.1} {RNA815_900}
23. MligTC455_51856 15 0.3 Mlig455_041045

Neo: -

Age: -

 0.95 - - - - - 0.950 Mlig455_041045 {REF} {Length: 1607} {NoTransDecoderORF} {RNA1310_68361} {RNA815_51930}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA