Data search
Results for MligTC455_47422
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_47422 | 922 | 19.21 | Mlig455_051461 | Neo: Int S/G2/M Age: Down-Up-Up Region-enriched R5: 1.112/0.03317 |
CPSF4 | Mlig455_051461 {REF} {Length: 1537} {TRANSSPLICED} {Pfam: Zinc finger domain [PF18345.3, score=62.5]; Zinc finger C-x8-C-x5-C-x3-H type (and similar) [PF00642.26, score=57.3]; Torus domain [PF16131.7, score=34.2]; RNA-binding, Nab2-type zinc finger [PF14608.8, score=29.9]; CCCH-type zinc finger [PF18044.3, score=29.7]; Zinc-finger containing family [PF15663.7, score=29.2]; Zinc knuckle [PF00098.25, score=20.7]} {Human: ENSG00000160917, CPSF4, cleavage and polyadenylation specific factor 4, [RH, Score=271, Expect=1e-88]} {Mouse: ENSMUSG00000029625, Cpsf4, cleavage and polyadenylation specific factor 4, [RH, Score=271, Expect=1e-88]} {Dmel: FBgn0015621, Clp, Clipper, [RH, Score=249, Expect=7e-80]} {Celegans: WBGene00044329, cpsf-4, Cleavage and Polyadenylation Specificity Factor, [RH, Score=235, Expect=2e-74]} {Smed: dd_Smed_v6_4069_0_1, dd_Smed_v6_4069_0_1, [RH, Score=259, Expect=4e-84]} {RNA1509_31717} {RNA1310_19692.1} {RNA815_8519} |
Cumulative graph for MligTC455_47422
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | 0.231 | 4.522 | 0.80724 | 1.00000 | |
| RegionR2 | 0.011 | 4.522 | 0.98314 | 1.00000 | |
| RegionR3 | -0.56 | 4.522 | 0.23827 | 0.78007 | |
| RegionR4 | 0.306 | 4.522 | 0.52248 | 0.84709 | |
| RegionR5 | 1.112 | 4.522 | 0.00473 | 0.03317 | |
| RegionR6 | 0.269 | 4.522 | 0.54118 | 1.00000 | |
| RegionR7 | -0.089 | 4.522 | 0.87417 | 1.00000 | |
| RegionR8 | -1.281 | 4.522 | 0.12122 | 0.64073 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -8.135 | 4.522 | 0.01987 | 0.56258 | |
| RegenerationR2 | -0.011 | 4.522 | 0.98189 | 1.00000 | |
| RegenerationR3 | 0.669 | 4.522 | 0.19835 | 0.63298 | |
| RegenerationR4 | 0.403 | 4.522 | 0.43149 | 0.83126 | |
| RegenerationR5 | -0.23 | 4.522 | 0.62251 | 0.91970 | |
| RegenerationR6 | 0.569 | 4.522 | 0.25637 | 0.60654 | |
| RegenerationBL | 1.255 | 4.522 | 0.01931 | 0.15001 | |
| RegenerationTP | 1.12 | 4.522 | 0.07874 | 0.44780 |
Genes with expression patterns similar to MligTC455_47422
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_47422 | 922 | 19.21 | Mlig455_051461 | Neo: Int S/G2/M Age: Down-Up-Up Region-enriched R5: 1.112/0.03317 |
CPSF4 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_051461 {REF} {Length: 1537} {TRANSSPLICED} {Pfam: Zinc finger domain [PF18345.3, score=62.5]; Zinc finger C-x8-C-x5-C-x3-H type (and similar) [PF00642.26, score=57.3]; Torus domain [PF16131.7, score=34.2]; RNA-binding, Nab2-type zinc finger [PF14608.8, score=29.9]; CCCH-type zinc finger [PF18044.3, score=29.7]; Zinc-finger containing family [PF15663.7, score=29.2]; Zinc knuckle [PF00098.25, score=20.7]} {Human: ENSG00000160917, CPSF4, cleavage and polyadenylation specific factor 4, [RH, Score=271, Expect=1e-88]} {Mouse: ENSMUSG00000029625, Cpsf4, cleavage and polyadenylation specific factor 4, [RH, Score=271, Expect=1e-88]} {Dmel: FBgn0015621, Clp, Clipper, [RH, Score=249, Expect=7e-80]} {Celegans: WBGene00044329, cpsf-4, Cleavage and Polyadenylation Specificity Factor, [RH, Score=235, Expect=2e-74]} {Smed: dd_Smed_v6_4069_0_1, dd_Smed_v6_4069_0_1, [RH, Score=259, Expect=4e-84]} {RNA1509_31717} {RNA1310_19692.1} {RNA815_8519} |
| 2. | MligTC455_40870 | 1135 | 23.64 | Mlig455_033953 | Neo: Irradiation Age: - |
ZC3H14 | 2.639 | - | - | - | 0.974 | 0.787 | 0.878 | Mlig455_033953 {REF} {Length: 3368} {Pfam: RNA-binding, Nab2-type zinc finger [PF14608.8, score=50.9]; PWI domain [PF01480.19, score=20.4]} {Human: ENSG00000100722, ZC3H14, zinc finger CCCH-type containing 14, [RH, Score=152, Expect=1e-37]} {Mouse: ENSMUSG00000021012, Zc3h14, zinc finger CCCH type containing 14, [RH, Score=154, Expect=2e-38]} {Dmel: FBgn0028471, Nab2, Nuclear polyadenosine RNA-binding 2, [RH, Score=144, Expect=3e-35]} {Celegans: WBGene00022019, sut-2, Zinc finger CCCH domain-containing protein 14, [RH, Score=100, Expect=2e-21]} {Smed: dd_Smed_v6_3615_0_1, dd_Smed_v6_3615_0_1, [RH, Score=186, Expect=5e-51]} {RNA1509_27588, RNA1509_37892, RNA1509_44812, RNA1509_5215} {RNA1310_6449, RNA1509_27588, RNA1509_37892, RNA1509_44812, RNA1509_5215} {RNA1509_27588, RNA1509_37892, RNA1509_44812, RNA1509_5215, RNA815_8219} |
| 3. | MligTC455_18896 | 1136 | 23.67 | Mlig455_057881 | Neo: Irradiation Age: Down-Up-Up |
DDX52 | 2.477 | 0.820 | - | - | - | 0.954 | 0.703 | Mlig455_057881 {REF} {Length: 1741} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=115.0]; Helicase conserved C-terminal domain [PF00271.33, score=87.4]} {Human: ENSG00000278053, DDX52, DExD-box helicase 52, [RH, Score=289, Expect=6e-90]; ENSG00000277594, DDX52, DExD-box helicase 52, [RH, Score=288, Expect=2e-89]} {Mouse: ENSMUSG00000020677, Ddx52, DEAD (Asp-Glu-Ala-Asp) box polypeptide 52, [RH, Score=289, Expect=3e-90]} {Dmel: FBgn0036754, CG5589, [RH, Score=278, Expect=5e-86]} {Celegans: WBGene00011032, R05D11.4, [RH, Score=253, Expect=6e-77]} {Smed: dd_Smed_v6_7870_0_1, dd_Smed_v6_7870_0_1, [RH, Score=246, Expect=2e-75]} {RNA1509_7314} {RNA1310_15587} {RNA815_6774} |
| 4. | MligTC455_09399 | 1048 | 21.83 | Mlig455_028623, Mlig455_028647 | Neo: - |
GNPTAB | 1.903 | - | - | - | 0.974 | - | 0.929 | Mlig455_028623 {REF} {Length: 4789} {Pfam: Stealth protein CR2, conserved region 2 [PF11380.10, score=160.8]; Stealth protein CR4, conserved region 4 [PF17103.7, score=56.6]; Stealth protein CR3, conserved region 3 [PF17102.7, score=51.1]; LNR domain [PF00066.19, score=44.0]; Stealth protein CR1, conserved region 1 [PF17101.7, score=39.7]} {Human: ENSG00000111670, GNPTAB, N-acetylglucosamine-1-phosphate transferase subunits alpha and beta, [RH, Score=291, Expect=2e-81]} {Mouse: ENSMUSG00000035311, Gnptab, N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits, [RH, Score=274, Expect=6e-76]} {Dmel: FBgn0033392, CG8027, [RH, Score=201, Expect=6e-54]} {Smed: dd_Smed_v6_6309_0_1, dd_Smed_v6_6309_0_1, [RH, Score=245, Expect=3e-67]} {RNA1509_31005} {RNA1310_13459} {RNA815_4778} Mlig455_028647 {REF} {Length: 4932} {TRANSSPLICED} {Pfam: Stealth protein CR2, conserved region 2 [PF11380.10, score=160.6]; Stealth protein CR4, conserved region 4 [PF17103.7, score=56.5]; Stealth protein CR3, conserved region 3 [PF17102.7, score=51.0]; LNR domain [PF00066.19, score=43.9]; Stealth protein CR1, conserved region 1 [PF17101.7, score=39.6]} {Human: ENSG00000111670, GNPTAB, N-acetylglucosamine-1-phosphate transferase subunits alpha and beta, [RH, Score=295, Expect=1e-82]} {Mouse: ENSMUSG00000035311, Gnptab, N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits, [RH, Score=274, Expect=9e-76]} {Dmel: FBgn0033392, CG8027, [RH, Score=201, Expect=7e-54]} {Smed: dd_Smed_v6_6309_0_1, dd_Smed_v6_6309_0_1, [RH, Score=246, Expect=3e-67]} {RNA1509_31005} {RNA1310_13459} {RNA815_4778} |
| 5. | MligTC455_48751 | 2329 | 48.52 | Mlig455_013744 | Neo: Int S/G2/M Age: - |
NAT10 | 1.847 | - | - | - | 0.959 | - | 0.888 | Mlig455_013744 {REF} {Length: 3315} {TRANSSPLICED} {Pfam: GNAT acetyltransferase 2 [PF13718.8, score=306.7]; Helicase [PF05127.16, score=192.4]; Possible tRNA binding domain [PF13725.8, score=150.4]; Domain of unknown function (DUF1726) [PF08351.13, score=111.6]} {Human: ENSG00000135372, NAT10, N-acetyltransferase 10, [RH, Score=966, Expect=0.0]} {Mouse: ENSMUSG00000027185, Nat10, N-acetyltransferase 10, [RH, Score=957, Expect=0.0]} {Dmel: FBgn0027330, l(1)G0020, lethal (1) G0020, [RH, Score=876, Expect=0.0]} {Celegans: WBGene00018866, nath-10, RNA cytidine acetyltransferase, [RH, Score=854, Expect=0.0]} {Smed: dd_Smed_v6_10566_0_1, dd_Smed_v6_10566_0_1, [RH, Score=619, Expect=0.0]} {RNA1509_31593, RNA1509_44132, RNA1509_6732} {RNA1310_3627.1, RNA1509_31593, RNA1509_44132, RNA1509_6732} {RNA1509_31593, RNA1509_44132, RNA1509_6732, RNA815_1182} |
| 6. | MligTC455_49990 | 5612 | 116.92 | Mlig455_020609 | Neo: - Age: - |
RPS16 | 1.844 | - | - | - | 0.950 | - | 0.894 | Mlig455_020609 {REF} {Length: 603} {TRANSSPLICED} {Pfam: Ribosomal protein S9/S16 [PF00380.21, score=111.4]} {Human: ENSG00000105193, RPS16, ribosomal protein S16, [RH, Score=245, Expect=2e-84]} {Mouse: ENSMUSG00000037563, Rps16, ribosomal protein S16, [RH, Score=245, Expect=1e-84]} {Dmel: FBgn0034743, RpS16, Ribosomal protein S16, [RH, Score=243, Expect=8e-84]} {Celegans: WBGene00004485, rps-16, 40S ribosomal protein S16, [RH, Score=218, Expect=3e-74]} {Smed: dd_Smed_v6_170_0_1, dd_Smed_v6_170_0_1, [RH, Score=207, Expect=7e-70]} {RNA1509_2533, RNA1509_4015} {RNA1310_59020.1, RNA1509_2533, RNA1509_4015} {RNA1509_2533, RNA1509_4015, RNA815_30730} |
| 7. | MligTC455_11992 | 547 | 11.4 | Mlig455_070918 | Neo: Irradiation Age: - |
1.784 | - | - | - | 0.951 | - | 0.833 | Mlig455_070918 {REF} {Length: 2532} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=30.1]} {RNA1509_24959, RNA1509_52445} {RNA1310_2279.2, RNA1509_24959} {RNA1509_24959, RNA815_17518} | |
| 8. | MligTC455_18894 | 1132 | 23.59 | Mlig455_021180 | Neo: Irradiation Age: - |
DDX52 | 1.773 | 0.818 | - | - | - | 0.955 | - | Mlig455_021180 {REF} {Length: 1746} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=113.8]; Helicase conserved C-terminal domain [PF00271.33, score=87.4]} {Human: ENSG00000278053, DDX52, DExD-box helicase 52, [RH, Score=288, Expect=8e-90]; ENSG00000277594, DDX52, DExD-box helicase 52, [RH, Score=287, Expect=3e-89]} {Mouse: ENSMUSG00000020677, Ddx52, DEAD (Asp-Glu-Ala-Asp) box polypeptide 52, [RH, Score=289, Expect=5e-90]} {Dmel: FBgn0036754, CG5589, [RH, Score=278, Expect=4e-86]} {Celegans: WBGene00011032, R05D11.4, [RH, Score=251, Expect=3e-76]} {Smed: dd_Smed_v6_7870_0_1, dd_Smed_v6_7870_0_1, [RH, Score=245, Expect=3e-75]} {RNA1509_7314} {RNA1310_15587, RNA1509_7314} {RNA1509_7314, RNA815_6774} |
| 9. | MligTC455_46032 | 854 | 17.79 | Mlig455_031675 | Neo: - Age: Down-Up-Down |
TIPRL | 1.679 | - | - | - | 0.958 | 0.721 | - | Mlig455_031675 {REF} {Length: 1460} {TRANSSPLICED} {Pfam: TIP41-like family [PF04176.15, score=173.2]} {Human: ENSG00000143155, TIPRL, TOR signaling pathway regulator, [RH, Score=177, Expect=6e-54]} {Mouse: ENSMUSG00000040843, Tiprl, TIP41, TOR signalling pathway regulator-like (S. cerevisiae), [RH, Score=179, Expect=7e-55]} {Dmel: FBgn0031094, CG9578, [RH, Score=146, Expect=2e-42]} {Celegans: WBGene00022803, ZK688.9, TIP41-like protein, [RH, Score=134, Expect=7e-38]} {Smed: dd_Smed_v6_8251_0_1, dd_Smed_v6_8251_0_1, [RH, Score=143, Expect=2e-41]} {RNA1509_30710, RNA1509_52249, RNA1509_54198, RNA1509_54645} {RNA1310_33083, RNA1509_30710, RNA1509_52249, RNA1509_54198, RNA1509_54645} {RNA1509_30710, RNA1509_52249, RNA1509_54198, RNA1509_54645, RNA815_14908} |
| 10. | MligTC455_44650 | 7690 | 160.21 | Mlig455_020162 | Neo: Neoblast Age: logFC(26M/2M)=0.227 Regeneration-upregulated BL: 1.439 Regeneration-enriched BL: 1.439 |
CCT8 | 0.971 | - | - | - | 0.971 | - | - | Mlig455_020162 {REF} {Length: 2162} {TRANSSPLICED} {Pfam: TCP-1/cpn60 chaperonin family [PF00118.26, score=444.6]} {Human: ENSG00000156261, CCT8, chaperonin containing TCP1 subunit 8, [RH, Score=574, Expect=0.0]} {Mouse: ENSMUSG00000025613, Cct8, chaperonin containing Tcp1, subunit 8 (theta), [RH, Score=575, Expect=0.0]} {Dmel: FBgn0284436, CCT8, Chaperonin containing TCP1 subunit 8, [RH, Score=537, Expect=0.0]} {Celegans: WBGene00021934, cct-8, T-complex protein 1 subunit theta, [RH, Score=500, Expect=4e-173]} {Smed: dd_Smed_v6_903_0_1, dd_Smed_v6_903_0_1, [RH, Score=543, Expect=0.0]} {RNA1509_12121, RNA1509_15900, RNA1509_20587, RNA1509_44803, RNA1509_60040, RNA1509_8968, RNA1509_966} {RNA1310_11125.1, RNA1509_12121, RNA1509_15900, RNA1509_20587, RNA1509_44803, RNA1509_60040, RNA1509_8968, RNA1509_966} {RNA1509_12121, RNA1509_15900, RNA1509_20587, RNA1509_44803, RNA1509_60040, RNA1509_8968, RNA1509_966, RNA815_11581} |
| 11. | MligTC455_32763 | 1061 | 22.11 | Mlig455_045076 | Neo: - Age: Up-Down-Down |
PRPF8 | 0.955 | - | - | - | 0.955 | - | - | Mlig455_045076 {REF} {Length: 8657} {TRANSSPLICED} {Pfam: PROCN (NUC071) domain [PF08083.13, score=774.2]; PRP8 domain IV core [PF12134.10, score=422.5]; U6-snRNA interacting domain of PrP8 [PF10596.11, score=295.5]; PRO8NT (NUC069), PrP8 N-terminal domain [PF08082.13, score=280.6]; U5-snRNA binding site 2 of PrP8 [PF10597.11, score=241.2]; PROCT (NUC072) domain [PF08084.13, score=166.4]; RNA recognition motif of the spliceosomal PrP8 [PF10598.11, score=148.4]; JAB1/Mov34/MPN/PAD-1 ubiquitin protease [PF01398.23, score=18.8]} {Human: ENSG00000274442, PRPF8, pre-mRNA processing factor 8, [RH, Score=4199, Expect=0.0]; ENSG00000174231, PRPF8, pre-mRNA processing factor 8, [RH, Score=4199, Expect=0.0]} {Mouse: ENSMUSG00000020850, Prpf8, pre-mRNA processing factor 8, [RH, Score=4199, Expect=0.0]} {Dmel: FBgn0033688, Prp8, pre-mRNA processing factor 8, [RH, Score=4139, Expect=0.0]} {Celegans: WBGene00004187, prp-8, Pre-mRNA-splicing factor 8 homolog, [RH, Score=4034, Expect=0.0]} {Smed: dd_Smed_v6_2504_0_1, dd_Smed_v6_2504_0_1, [RH, Score=3820, Expect=0.0]} {RNA1509_1095, RNA1509_14304, RNA1509_39662} {RNA1310_216, RNA1509_1095, RNA1509_14304, RNA1509_39662} {RNA1509_1095, RNA1509_14304, RNA1509_39662, RNA815_117.1} |
| 12. | MligTC455_32930 | 826 | 17.21 | Mlig455_018043 | Neo: Int S/G2/M Age: - |
SMPD4 | 0.955 | - | - | - | 0.955 | - | - | Mlig455_018043 {REF} {Length: 2920} {TRANSSPLICED} {Pfam: Mitochondrial-associated sphingomyelin phosphodiesterase [PF14724.8, score=169.3]} {Human: ENSG00000136699, SMPD4, sphingomyelin phosphodiesterase 4, [RH, Score=137, Expect=9e-33]} {Mouse: ENSMUSG00000005899, Smpd4, sphingomyelin phosphodiesterase 4, [RH, Score=140, Expect=1e-33]} {Dmel: FBgn0037958, CG6962, [RH, Score=75.5, Expect=1e-13]} {Smed: dd_Smed_v6_5903_0_1, dd_Smed_v6_5903_0_1, [RH, Score=180, Expect=6e-47]} {RNA1509_13922, RNA1509_41974} {RNA1310_6397.1, RNA1509_13922, RNA1509_41974} {RNA1509_13922, RNA1509_41974, RNA815_9860} |
| 13. | MligTC455_11084 | 212 | 4.41 | Mlig455_020417 | Neo: - |
SUPT3H | 0.952 | - | - | - | 0.952 | - | - | Mlig455_020417 {REF} {Length: 1509} {TRANSSPLICED} {Pfam: Transcription initiation factor IID, 18kD subunit [PF02269.18, score=28.0]} {Human: ENSG00000196284, SUPT3H, SPT3 homolog, SAGA and STAGA complex component, [Score=58.9, Expect=1e-09]} {Mouse: ENSMUSG00000038954, Supt3, suppressor of Ty 3, [Score=61.2, Expect=2e-10]} {RNA1310_31583.1} {RNA815_40072} |
| 14. | MligTC455_35492 | 4107 | 85.56 | Mlig455_008715, Mlig455_046928 | Neo: - Age: - |
SERBP1 | 0.952 | - | - | - | 0.952 | - | - | Mlig455_008715 {REF} {Length: 2911} {Pfam: Hyaluronan / mRNA binding family [PF04774.17, score=75.1]} {Human: ENSG00000142864, SERBP1, SERPINE1 mRNA binding protein 1, [Score=51.6, Expect=3e-06]} {Mouse: ENSMUSG00000036371, Serbp1, serpine1 mRNA binding protein 1, [Score=50.4, Expect=3e-06]} {Dmel: FBgn0265047, FDY, flagrante delicto Y, [Score=65.1, Expect=5e-11]} {Smed: dd_Smed_v6_697_0_1, dd_Smed_v6_697_0_1, [Score=61.6, Expect=4e-10]} {RNA1509_9043, RNA1509_938} {RNA1310_4240.1, RNA1509_9043} {RNA1509_9043, RNA815_4868} Mlig455_046928 {REF} {Length: 3554} {Pfam: Hyaluronan / mRNA binding family [PF04774.17, score=73.5]} {Human: ENSG00000142864, SERBP1, SERPINE1 mRNA binding protein 1, [Score=51.2, Expect=3e-06]} {Mouse: ENSMUSG00000036371, Serbp1, serpine1 mRNA binding protein 1, [Score=50.4, Expect=5e-06]} {Dmel: FBgn0265047, FDY, flagrante delicto Y, [Score=63.5, Expect=1e-10]} {Smed: dd_Smed_v6_697_0_1, dd_Smed_v6_697_0_1, [Score=61.6, Expect=3e-10]} {RNA1509_938} {RNA1310_4240.1} {RNA815_4868} |
Berezikov Lab - 2020-2021 © ERIBA